FvH4_1g10090
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0023978
Physical Location & Seq
Reverse (-)
5483917 .. 5485229
1313 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g10090.t1

Sequence Viewer

Length: 1005 bp
ATGGCCCCTGAAATCATCGACCTCACCGTAGACTCTCCCCCGTCCAGCCCTACTCATCCCCACCATCCAAACAACCCATCTTCGTCATCAACAGCTTCTTCTGCTGCTGCTGCTATGCCAAATTACCCACCTCGTTGTCGCGCCGGACGCCCTAGATCTAACTATTGCTACAAAGGGTTCATAAGGACCAATCAGGTGAAGCAACAAAGCTTGGCCGTACGACCAACACCGGCAACAGCCTGCCCAAGCCGACTCCGTTACCATAACAACGTCCATAGGTACTCTGCAGGAACCCAAACCATGCGGCAGGGTGGTCAGTCTCTCCCCGTTTCGGATGCTTTGTGGACACAGAAAGAACACGATCAATTCGTAGAAGGGGTTTCGAAGTGTGGCATGGGGAACTGGACTGGAATAGCAATCTGGTTTGTGAAGACCAAGTCTCGTGAGCAAGTACGTAAATATGCTGAAGATTATTTCATGCGAGTTCGTTCCACAGCCACACGGGCCACTCGCTACATCCAGAAAGACCCATCATCAGTTGGTCCCTCAGATAATAACGATATCATGGTCAATGTTGCTCCTCGCGCAAAAAACCCAGCATCAAGGCACCTGAGGAGGCTGATCAGTAAGGGGTTGGGAGGACTTCGTAACCCTAGGTCAAACAATATGGTGCATCAATCCTCAGGAGGTCCAGTGCTCTTGAGGGGACCAGAGTCGGCACCGGGGCAGCAGCTGGTGACGGTTTCGGCACCGAGTTTTGTGTCCATACCTGTCTTTCCGGCCCCATCTGCTGTACCCGTGTCCGTCTCTGTACCGGATACTGTCTTGTTGCTGAGTTCATGGAGGAAACCACCATATATGTTTAGTCGGTTTCCGGCGGAAGGACCGGTTCTATTACCTCCTGCTGAAGGAGAAAGTAGTTGTTCATCATCCGGTAGGGGTGATCATGGGGATGGTGAGGCTGATGCTGAGAATGAAATTAACCTGGAACTCACTCTTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

335

Amino Acids

36.19

Weight (kDa)

9.7

Isoelectric Point (pI)

60.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 115 - 158 1.5e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023978)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10090
rosa_roxburghii Rroxscaffold_2G00145240
rosa_samantha Rh2DG112400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 606, 718, 748
AccI GTMKAC 1 cut(s) 30
AccII CGCG 2 cut(s) 141, 585
AciI CCGC 2 cut(s) 304, 878
AcoI YGGCCR 1 cut(s) 213
AcuI CTGAAG 2 cut(s) 486, 927
AcyI GRCGYC 1 cut(s) 148
AfaI GTAC 5 cut(s) 219, 281, 453, 795, 813
AfiI CCNNNNNNNGG 3 cut(s) 331, 881, 908
AgeI ACCGGT 1 cut(s) 886
AjnI CCWGG 1 cut(s) 984
AjuI GAANNNNNNNTTGG 1 cut(s) 981
AluBI AGCT 3 cut(s) 95, 210, 733
AluI AGCT 3 cut(s) 95, 210, 733
Alw21I GWGCWC 1 cut(s) 699
Alw26I GTCTC 3 cut(s) 324, 444, 811
AlwNI CAGNNNCTG 1 cut(s) 733
AoxI GGCC 4 cut(s) 3, 213, 504, 780
ApeKI GCWGC 5 cut(s) 104, 107, 110, 727, 730
AsiGI ACCGGT 1 cut(s) 886
AspA2I CCTAGG 1 cut(s) 653
AspLEI GCGC 2 cut(s) 143, 587
AspS9I GGNCC 8 cut(s) 4, 186, 504, 542, 689, 707, 781, 884
AsuC2I CCSGG 1 cut(s) 723
AsuHPI GGTGA 5 cut(s) 16, 208, 748, 953, 968
AsuII TTCGAA 1 cut(s) 383
AvaII GGWCC 5 cut(s) 186, 542, 689, 707, 884
AvrII CCTAGG 1 cut(s) 653
AxyI CCTNAGG 2 cut(s) 611, 682
BanI GGYRCC 3 cut(s) 606, 718, 748
BauI CACGAG 1 cut(s) 441
BbsI GAAGAC 1 cut(s) 437
Bbv12I GWGCWC 1 cut(s) 699
BbvI GCAGC 5 cut(s) 91, 94, 97, 739, 742
BccI CCATC 5 cut(s) 72, 85, 538, 793, 947
BceAI ACGGC 1 cut(s) 200
BciT130I CCWGG 1 cut(s) 986
BciVI GTATCC 1 cut(s) 811
BclI TGATCA 2 cut(s) 621, 943
BcnI CCSGG 1 cut(s) 723
BcoDI GTCTC 3 cut(s) 324, 444, 811
BfaI CTAG 2 cut(s) 153, 654
BfmI CTRYAG 1 cut(s) 285
BfuI GTATCC 1 cut(s) 811
BglI GCCNNNNNGGC 1 cut(s) 503
BglII AGATCT 1 cut(s) 155
BisI GCNGC 6 cut(s) 105, 108, 111, 305, 728, 731
BlnI CCTAGG 1 cut(s) 653
BlsI GCNGC 6 cut(s) 106, 109, 112, 306, 729, 732
Bme1390I CCNGG 2 cut(s) 723, 986
Bme18I GGWCC 5 cut(s) 186, 542, 689, 707, 884
BmgT120I GGNCC 8 cut(s) 4, 186, 504, 542, 689, 707, 781, 884
BmiI GGNNCC 8 cut(s) 6, 292, 544, 608, 708, 720, 750, 783
BmrFI CCNGG 2 cut(s) 723, 986
BmsI GCATC 4 cut(s) 325, 608, 682, 955
BoxI GACNNNNGTC 1 cut(s) 712
BpiI GAAGAC 1 cut(s) 437
Bpu14I TTCGAA 1 cut(s) 383
BpuEI CTTGAG 1 cut(s) 721
BpuMI CCSGG 1 cut(s) 723
BsaAI YACGTR 1 cut(s) 455
BsaHI GRCGYC 1 cut(s) 148
BsaJI CCNNGG 2 cut(s) 653, 722
BsaWI WCCGGW 3 cut(s) 814, 886, 932
BsaXI ACNNNNNCTCC 2 cut(s) 678, 708
Bsc4I CCNNNNNNNGG 3 cut(s) 331, 881, 908
Bse118I RCCGGY 2 cut(s) 229, 886
Bse1I ACTGG 3 cut(s) 407, 412, 692
Bse21I CCTNAGG 2 cut(s) 611, 682
BseBI CCWGG 1 cut(s) 986
BseDI CCNNGG 2 cut(s) 653, 722
BseGI GGATG 6 cut(s) 55, 64, 340, 516, 929, 958
BseLI CCNNNNNNNGG 3 cut(s) 331, 881, 908
BseMII CTCAG 5 cut(s) 561, 602, 696, 824, 960
BseNI ACTGG 3 cut(s) 407, 412, 692
BseRI GAGGAG 2 cut(s) 570, 628
BseXI GCAGC 5 cut(s) 91, 94, 97, 739, 742
BseYI CCCAGC 1 cut(s) 595
Bsh1236I CGCG 2 cut(s) 141, 585
BshFI GGCC 4 cut(s) 5, 215, 506, 782
BshNI GGYRCC 3 cut(s) 606, 718, 748
BshTI ACCGGT 1 cut(s) 886
BsiHKAI GWGCWC 1 cut(s) 699
BsiSI CCGG 8 cut(s) 144, 230, 722, 779, 815, 875, 887, 933
BsiWI CGTACG 1 cut(s) 217
BslFI GGGAC 2 cut(s) 528, 720
BslI CCNNNNNNNGG 3 cut(s) 331, 881, 908
BsmAI GTCTC 3 cut(s) 324, 444, 811
BsmBI CGTCTC 1 cut(s) 811
BsmFI GGGAC 2 cut(s) 528, 720
BsnI GGCC 4 cut(s) 5, 215, 506, 782
Bsp119I TTCGAA 1 cut(s) 383
Bsp1286I GDGCHC 1 cut(s) 699
Bsp143I GATC 4 cut(s) 155, 361, 621, 943
BspACI CCGC 2 cut(s) 304, 878
BspANI GGCC 4 cut(s) 5, 215, 506, 782
BspCNI CTCAG 5 cut(s) 560, 603, 695, 825, 961
BspFNI CGCG 2 cut(s) 141, 585
BspLI GGNNCC 8 cut(s) 6, 292, 544, 608, 708, 720, 750, 783
BspMAI CTGCAG 1 cut(s) 289
BspT104I TTCGAA 1 cut(s) 383
BspT107I GGYRCC 3 cut(s) 606, 718, 748
BsrFI RCCGGY 2 cut(s) 229, 886
BsrI ACTGG 3 cut(s) 407, 412, 692
BssAI RCCGGY 2 cut(s) 229, 886
BssECI CCNNGG 2 cut(s) 653, 722
BssMI GATC 4 cut(s) 155, 361, 621, 943
BssNI GRCGYC 1 cut(s) 148
BssSI CACGAG 1 cut(s) 441
BssT1I CCWWGG 1 cut(s) 653
Bst2BI CACGAG 1 cut(s) 441
Bst2UI CCWGG 1 cut(s) 986
Bst4CI ACNGT 3 cut(s) 28, 742, 823
BstACI GRCGYC 1 cut(s) 148
BstBAI YACGTR 1 cut(s) 455
BstBI TTCGAA 1 cut(s) 383
BstC8I GCNNGC 1 cut(s) 241
BstDEI CTNAG 5 cut(s) 547, 611, 682, 833, 969
BstENI CCTNNNNNAGG 1 cut(s) 906
BstF5I GGATG 6 cut(s) 55, 64, 340, 516, 929, 958
BstFNI CGCG 2 cut(s) 141, 585
BstHHI GCGC 2 cut(s) 143, 587
BstKTI GATC 4 cut(s) 158, 364, 624, 946
BstMAI GTCTC 3 cut(s) 324, 444, 811
BstMBI GATC 4 cut(s) 155, 361, 621, 943
BstMWI GCNNNNNNNGC 6 cut(s) 101, 110, 147, 503, 584, 788
BstNI CCWGG 1 cut(s) 986
BstPAI GACNNNNGTC 1 cut(s) 712
BstSCI CCNGG 2 cut(s) 721, 984
BstSFI CTRYAG 1 cut(s) 285
BstSNI TACGTA 1 cut(s) 455
BstUI CGCG 2 cut(s) 141, 585
BstV1I GCAGC 5 cut(s) 91, 94, 97, 739, 742
BstV2I GAAGAC 1 cut(s) 437
BstX2I RGATCY 1 cut(s) 155
BstYI RGATCY 1 cut(s) 155
Bsu36I CCTNAGG 2 cut(s) 611, 682
BsuI GTATCC 1 cut(s) 811
BsuRI GGCC 4 cut(s) 5, 215, 506, 782
BtsCI GGATG 6 cut(s) 55, 64, 340, 516, 929, 958
BtsIMutI CAGTG 1 cut(s) 699
Cac8I GCNNGC 1 cut(s) 241
CaiI CAGNNNCTG 1 cut(s) 733
CfoI GCGC 2 cut(s) 143, 587
Cfr10I RCCGGY 2 cut(s) 229, 886
Cfr13I GGNCC 8 cut(s) 4, 186, 504, 542, 689, 707, 781, 884
CseI GACGC 1 cut(s) 156
Csp6I GTAC 5 cut(s) 218, 280, 452, 794, 812
CspAI ACCGGT 1 cut(s) 886
CviAII CATG 6 cut(s) 301, 394, 478, 565, 840, 947
CviQI GTAC 5 cut(s) 218, 280, 452, 794, 812
DdeI CTNAG 5 cut(s) 547, 611, 682, 833, 969
DpnI GATC 4 cut(s) 157, 363, 623, 945
DpnII GATC 4 cut(s) 155, 361, 621, 943
EaeI YGGCCR 1 cut(s) 213
EciI GGCGGA 1 cut(s) 893
Eco105I TACGTA 1 cut(s) 455
Eco130I CCWWGG 1 cut(s) 653
Eco32I GATATC 1 cut(s) 562
Eco47I GGWCC 5 cut(s) 186, 542, 689, 707, 884
Eco57I CTGAAG 2 cut(s) 486, 927
Eco81I CCTNAGG 2 cut(s) 611, 682
EcoNI CCTNNNNNAGG 1 cut(s) 906
EcoRII CCWGG 1 cut(s) 984
EcoRV GATATC 1 cut(s) 562
EcoT14I CCWWGG 1 cut(s) 653
ErhI CCWWGG 1 cut(s) 653
Esp3I CGTCTC 1 cut(s) 811
FaeI CATG 6 cut(s) 304, 397, 481, 568, 843, 950
FaqI GGGAC 2 cut(s) 528, 720
FatI CATG 6 cut(s) 300, 393, 477, 564, 839, 946
FbaI TGATCA 2 cut(s) 621, 943
FblI GTMKAC 1 cut(s) 30
Fnu4HI GCNGC 6 cut(s) 105, 108, 111, 305, 728, 731
FokI GGATG 6 cut(s) 42, 51, 347, 503, 916, 965
Fsp4HI GCNGC 6 cut(s) 105, 108, 111, 305, 728, 731
FspBI CTAG 2 cut(s) 153, 654
GlaI GCGC 2 cut(s) 142, 586
GluI GCNGC 6 cut(s) 105, 108, 111, 305, 728, 731
GsaI CCCAGC 1 cut(s) 599
HaeIII GGCC 4 cut(s) 5, 215, 506, 782
HapII CCGG 8 cut(s) 144, 230, 722, 779, 815, 875, 887, 933
HgaI GACGC 1 cut(s) 156
HhaI GCGC 2 cut(s) 143, 587
Hin1I GRCGYC 1 cut(s) 148
Hin1II CATG 6 cut(s) 304, 397, 481, 568, 843, 950
Hin6I GCGC 2 cut(s) 141, 585
HinP1I GCGC 2 cut(s) 141, 585
HindIII AAGCTT 1 cut(s) 208
HinfI GANTC 3 cut(s) 32, 252, 713
HpaII CCGG 8 cut(s) 144, 230, 722, 779, 815, 875, 887, 933
HphI GGTGA 5 cut(s) 16, 208, 748, 953, 968
Hpy166II GTNNAC 2 cut(s) 31, 345
Hpy188I TCNGA 2 cut(s) 334, 550
Hpy188III TCNNGA 4 cut(s) 443, 520, 684, 700
Hpy8I GTNNAC 2 cut(s) 31, 345
HpyAV CCTTC 3 cut(s) 368, 875, 902
HpyCH4III ACNGT 3 cut(s) 28, 742, 823
HpyCH4IV ACGT 2 cut(s) 270, 454
HpyCH4V TGCA 2 cut(s) 287, 673
HpyF10VI GCNNNNNNNGC 6 cut(s) 101, 110, 147, 503, 584, 788
HpyF3I CTNAG 5 cut(s) 547, 611, 682, 833, 969
HpySE526I ACGT 2 cut(s) 270, 454
Hsp92I GRCGYC 1 cut(s) 148
Hsp92II CATG 6 cut(s) 304, 397, 481, 568, 843, 950
HspAI GCGC 2 cut(s) 141, 585
Ksp22I TGATCA 2 cut(s) 621, 943
Kzo9I GATC 4 cut(s) 155, 361, 621, 943
LmnI GCTCC 1 cut(s) 583
Lsp1109I GCAGC 5 cut(s) 91, 94, 97, 739, 742
LweI GCATC 4 cut(s) 325, 608, 682, 955
MaeI CTAG 2 cut(s) 153, 654
MaeII ACGT 2 cut(s) 270, 454
MaeIII GTNAC 3 cut(s) 257, 647, 736
MalI GATC 4 cut(s) 157, 363, 623, 945
MboI GATC 4 cut(s) 155, 361, 621, 943
MboII GAAGA 4 cut(s) 72, 90, 442, 479
MflI RGATCY 1 cut(s) 155
MhlI GDGCHC 1 cut(s) 699
MluCI AATT 3 cut(s) 121, 365, 978
MlyI GAGTC 3 cut(s) 26, 246, 722
MseI TTAA 1 cut(s) 981
MslI CAYNNNNRTG 1 cut(s) 951
MspA1I CMGCKG 1 cut(s) 733
MspI CCGG 8 cut(s) 144, 230, 722, 779, 815, 875, 887, 933
MspR9I CCNGG 2 cut(s) 723, 986
MvaI CCWGG 1 cut(s) 986
MvnI CGCG 2 cut(s) 141, 585
MwoI GCNNNNNNNGC 6 cut(s) 101, 110, 147, 503, 584, 788
NciI CCSGG 1 cut(s) 723
NdeII GATC 4 cut(s) 155, 361, 621, 943
NlaIII CATG 6 cut(s) 304, 397, 481, 568, 843, 950
NlaIV GGNNCC 8 cut(s) 6, 292, 544, 608, 708, 720, 750, 783
NmuCI GTSAC 1 cut(s) 736
NspV TTCGAA 1 cut(s) 383
PcsI WCGNNNNNNNCGW 2 cut(s) 24, 366
Pfl23II CGTACG 1 cut(s) 217
PflFI GACNNNGTC 1 cut(s) 436
PinAI ACCGGT 1 cut(s) 886
PkrI GCNGC 6 cut(s) 106, 109, 112, 306, 729, 732
PleI GAGTC 3 cut(s) 26, 246, 721
PpsI GAGTC 3 cut(s) 26, 246, 721
Ppu21I YACGTR 1 cut(s) 455
PshAI GACNNNNGTC 1 cut(s) 712
Psp6I CCWGG 1 cut(s) 984
PspFI CCCAGC 1 cut(s) 595
PspGI CCWGG 1 cut(s) 984
PspLI CGTACG 1 cut(s) 217
PspN4I GGNNCC 8 cut(s) 6, 292, 544, 608, 708, 720, 750, 783
PspPI GGNCC 8 cut(s) 4, 186, 504, 542, 689, 707, 781, 884
PstI CTGCAG 1 cut(s) 289
PstNI CAGNNNCTG 1 cut(s) 733
PsuI RGATCY 1 cut(s) 155
PsyI GACNNNGTC 1 cut(s) 436
PvuII CAGCTG 1 cut(s) 733
RsaI GTAC 5 cut(s) 219, 281, 453, 795, 813
RsaNI GTAC 5 cut(s) 218, 280, 452, 794, 812
RseI CAYNNNNRTG 1 cut(s) 951
SaqAI TTAA 1 cut(s) 981
SatI GCNGC 6 cut(s) 105, 108, 111, 305, 728, 731
Sau3AI GATC 4 cut(s) 155, 361, 621, 943
Sau96I GGNCC 8 cut(s) 4, 186, 504, 542, 689, 707, 781, 884
SchI GAGTC 3 cut(s) 26, 246, 722
ScrFI CCNGG 2 cut(s) 723, 986
SduI GDGCHC 1 cut(s) 699
SfaNI GCATC 4 cut(s) 325, 608, 682, 955
SfcI CTRYAG 1 cut(s) 285
SfuI TTCGAA 1 cut(s) 383
SinI GGWCC 5 cut(s) 186, 542, 689, 707, 884
SmiMI CAYNNNNRTG 1 cut(s) 951
SmlI CTYRAG 1 cut(s) 700
SmoI CTYRAG 1 cut(s) 700
SnaBI TACGTA 1 cut(s) 455
Sse9I AATT 3 cut(s) 121, 365, 978
SsiI CCGC 2 cut(s) 304, 878
SspMI CTAG 2 cut(s) 153, 654
StyD4I CCNGG 2 cut(s) 721, 984
StyI CCWWGG 1 cut(s) 653
TaaI ACNGT 3 cut(s) 28, 742, 823
TaiI ACGT 2 cut(s) 273, 457
TaqI TCGA 2 cut(s) 18, 383
TasI AATT 3 cut(s) 121, 365, 978
TauI GCSGC 1 cut(s) 307
Tru1I TTAA 1 cut(s) 981
Tru9I TTAA 1 cut(s) 981
TscAI CASTG 1 cut(s) 699
TseFI GTSAC 1 cut(s) 736
TseI GCWGC 5 cut(s) 104, 107, 110, 727, 730
Tsp45I GTSAC 1 cut(s) 736
TspDTI ATGAA 5 cut(s) 169, 466, 828, 915, 990
TspGWI ACGGA 2 cut(s) 245, 793
TspRI CASTG 1 cut(s) 699
Tth111I GACNNNGTC 1 cut(s) 436
VpaK11BI GGWCC 5 cut(s) 186, 542, 689, 707, 884
XagI CCTNNNNNAGG 1 cut(s) 906
XmaJI CCTAGG 1 cut(s) 653
XmiI GTMKAC 1 cut(s) 30
XspI CTAG 2 cut(s) 153, 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.