Rh1DG220500

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0022254
Physical Location & Seq
Reverse (-)
42931982 .. 42943077
11096 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG220500.1

Sequence Viewer

Length: 618 bp
ATGTCCCATTTTCTTTGGAGGTGTGCTACAGGTTATCTACCATGTAAGGTTTCTCTGTCTTTGAGGAGCTTGGTTATGGATTCTACGTGCTCTCGGTGTCAACAAGCTCGGGAATCACCTTTACACGCAATATATCAATGCTCATATAGTATTGCGGTGTTGGAAAAGGCGAACTTCTATTCCAAGTTGGGCCAAGACACGTGGAATTCTTTTATTAATTTTTTGGAGGATGCTAGGAAGGTGTTGACGGTGGATGAACTGAGGTTTCTGGTGGTGTTGCTATGGAGTAATTGGAAGGAAAGAAATGCGGTGCAATTTGGTGAGCATCCACGGCCTCCAGAGGTTATTTATGCAATGAGCGAGGCAGTTTGGAATGGCATATTACAAAACCAGGTTTTGAATCAACCTGGAGCTAAAGCTATAGATGATTATGCCAGTCTGAAGTCTAAGGCAGCAGAATCAAATGCTGCAGCAAATGTGGATCCTAGGATGGAGGCTATCATGGAGAAAATGTTGGGCAAGGCCAGAGGCGAGGCCGAAGTTGGGGCTGGGCTAGAGGCCGATGGAGAGGATGGCGGGGTGGCATTGGAGCGCGGGCCTGGGAGGCAGAGAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

205

Amino Acids

22.74

Weight (kDa)

5.97

Isoelectric Point (pI)

29.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 1 - 51 1.3e-06 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g37970
rosa_samantha Rh1AG224700 Rh1CG209400 Rh1DG220500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 594
AciI CCGC 4 cut(s) 155, 308, 576, 594
AclWI GGATC 2 cut(s) 476, 489
AcsI RAATTY 1 cut(s) 205
AcuI CTGAAG 1 cut(s) 461
AcvI CACGTG 1 cut(s) 201
AfiI CCNNNNNNNGG 1 cut(s) 543
AflIII ACRYGT 1 cut(s) 198
AgsI TTSAA 1 cut(s) 400
AjnI CCWGG 3 cut(s) 390, 406, 598
AloI GAACNNNNNNTCC 2 cut(s) 164, 196
AluBI AGCT 4 cut(s) 69, 107, 413, 419
AluI AGCT 4 cut(s) 69, 107, 413, 419
Alw21I GWGCWC 1 cut(s) 92
AlwI GGATC 2 cut(s) 476, 489
Ama87I CYCGRG 1 cut(s) 108
AoxI GGCC 6 cut(s) 190, 332, 522, 534, 558, 596
ApeKI GCWGC 3 cut(s) 452, 467, 470
ApoI RAATTY 1 cut(s) 205
AseI ATTAAT 1 cut(s) 216
AspA2I CCTAGG 1 cut(s) 485
AspLEI GCGC 1 cut(s) 594
AspS9I GGNCC 2 cut(s) 190, 596
AsuHPI GGTGA 2 cut(s) 108, 332
AvaI CYCGRG 1 cut(s) 108
AvrII CCTAGG 1 cut(s) 485
BamHI GGATCC 1 cut(s) 481
BbrPI CACGTG 1 cut(s) 201
Bbv12I GWGCWC 1 cut(s) 92
BbvI GCAGC 3 cut(s) 454, 464, 482
BccI CCATC 3 cut(s) 484, 557, 566
BceAI ACGGC 1 cut(s) 347
BciT130I CCWGG 3 cut(s) 392, 408, 600
BfaI CTAG 3 cut(s) 234, 486, 554
BfmI CTRYAG 3 cut(s) 27, 420, 468
BglI GCCNNNNNGGC 1 cut(s) 604
BisI GCNGC 3 cut(s) 453, 468, 471
BlnI CCTAGG 1 cut(s) 485
BlsI GCNGC 3 cut(s) 454, 469, 472
Bme1390I CCNGG 3 cut(s) 392, 408, 600
BmeT110I CYCGRG 1 cut(s) 108
BmgT120I GGNCC 2 cut(s) 190, 596
BmiI GGNNCC 1 cut(s) 483
BmrFI CCNGG 3 cut(s) 392, 408, 600
BmsI GCATC 2 cut(s) 220, 334
BpmI CTGGAG 2 cut(s) 321, 429
BsaAI YACGTR 2 cut(s) 87, 201
BsaJI CCNNGG 3 cut(s) 329, 485, 599
BsaXI ACNNNNNCTCC 2 cut(s) 497, 527
Bsc4I CCNNNNNNNGG 1 cut(s) 543
Bse1I ACTGG 1 cut(s) 435
Bse3DI GCAATG 1 cut(s) 360
BseBI CCWGG 3 cut(s) 392, 408, 600
BseDI CCNNGG 3 cut(s) 329, 485, 599
BseGI GGATG 5 cut(s) 235, 259, 325, 495, 577
BseLI CCNNNNNNNGG 1 cut(s) 543
BseMI GCAATG 1 cut(s) 360
BseMII CTCAG 1 cut(s) 251
BseNI ACTGG 1 cut(s) 435
BseRI GAGGAG 1 cut(s) 79
BseXI GCAGC 3 cut(s) 454, 464, 482
BseYI CCCAGC 1 cut(s) 548
Bsh1236I CGCG 1 cut(s) 594
BshFI GGCC 6 cut(s) 192, 334, 524, 536, 560, 598
BsiHKAI GWGCWC 1 cut(s) 92
BsiHKCI CYCGRG 1 cut(s) 108
BslI CCNNNNNNNGG 1 cut(s) 543
BsnI GGCC 6 cut(s) 192, 334, 524, 536, 560, 598
BsoBI CYCGRG 1 cut(s) 108
Bsp1286I GDGCHC 1 cut(s) 92
Bsp143I GATC 1 cut(s) 481
BspACI CCGC 4 cut(s) 155, 308, 576, 594
BspANI GGCC 6 cut(s) 192, 334, 524, 536, 560, 598
BspCNI CTCAG 1 cut(s) 252
BspFNI CGCG 1 cut(s) 594
BspLI GGNNCC 1 cut(s) 483
BspMAI CTGCAG 1 cut(s) 472
BspPI GGATC 2 cut(s) 476, 489
BsrDI GCAATG 1 cut(s) 360
BsrI ACTGG 1 cut(s) 435
BssECI CCNNGG 3 cut(s) 329, 485, 599
BssMI GATC 1 cut(s) 481
BssT1I CCWWGG 1 cut(s) 485
Bst2UI CCWGG 3 cut(s) 392, 408, 600
Bst4CI ACNGT 1 cut(s) 250
BstBAI YACGTR 2 cut(s) 87, 201
BstC8I GCNNGC 1 cut(s) 596
BstDEI CTNAG 2 cut(s) 260, 447
BstDSI CCRYGG 1 cut(s) 329
BstF5I GGATG 5 cut(s) 235, 259, 325, 495, 577
BstFNI CGCG 1 cut(s) 594
BstHHI GCGC 1 cut(s) 594
BstKTI GATC 1 cut(s) 484
BstMBI GATC 1 cut(s) 481
BstMWI GCNNNNNNNGC 2 cut(s) 331, 604
BstNI CCWGG 3 cut(s) 392, 408, 600
BstSCI CCNGG 3 cut(s) 390, 406, 598
BstSFI CTRYAG 3 cut(s) 27, 420, 468
BstUI CGCG 1 cut(s) 594
BstV1I GCAGC 3 cut(s) 454, 464, 482
BstX2I RGATCY 1 cut(s) 481
BstYI RGATCY 1 cut(s) 481
BsuRI GGCC 6 cut(s) 192, 334, 524, 536, 560, 598
BtgI CCRYGG 1 cut(s) 329
BtsCI GGATG 5 cut(s) 235, 259, 325, 495, 577
Cac8I GCNNGC 1 cut(s) 596
CfoI GCGC 1 cut(s) 594
Cfr13I GGNCC 2 cut(s) 190, 596
CsiI ACCWGGT 1 cut(s) 390
CspCI CAANNNNNGTGG 2 cut(s) 182, 217
CviAII CATG 2 cut(s) 42, 502
DdeI CTNAG 2 cut(s) 260, 447
DpnI GATC 1 cut(s) 483
DpnII GATC 1 cut(s) 481
Eco130I CCWWGG 1 cut(s) 485
Eco57I CTGAAG 1 cut(s) 461
Eco72I CACGTG 1 cut(s) 201
Eco88I CYCGRG 1 cut(s) 108
EcoRI GAATTC 1 cut(s) 205
EcoRII CCWGG 3 cut(s) 390, 406, 598
EcoT14I CCWWGG 1 cut(s) 485
ErhI CCWWGG 1 cut(s) 485
FaeI CATG 2 cut(s) 45, 505
FalI AAGNNNNNCTT 2 cut(s) 158, 190
FatI CATG 2 cut(s) 41, 501
FauI CCCGC 2 cut(s) 569, 587
Fnu4HI GCNGC 3 cut(s) 453, 468, 471
FokI GGATG 5 cut(s) 242, 266, 312, 502, 584
Fsp4HI GCNGC 3 cut(s) 453, 468, 471
FspBI CTAG 3 cut(s) 234, 486, 554
GlaI GCGC 1 cut(s) 593
GluI GCNGC 3 cut(s) 453, 468, 471
GsaI CCCAGC 1 cut(s) 552
GsuI CTGGAG 2 cut(s) 321, 429
HaeIII GGCC 6 cut(s) 192, 334, 524, 536, 560, 598
HhaI GCGC 1 cut(s) 594
Hin1II CATG 2 cut(s) 45, 505
Hin6I GCGC 1 cut(s) 592
HinP1I GCGC 1 cut(s) 592
HincII GTYRAC 2 cut(s) 101, 246
HindII GTYRAC 2 cut(s) 101, 246
HinfI GANTC 4 cut(s) 80, 113, 400, 458
HphI GGTGA 2 cut(s) 108, 332
Hpy166II GTNNAC 2 cut(s) 101, 246
Hpy188I TCNGA 1 cut(s) 441
Hpy188III TCNNGA 2 cut(s) 110, 338
Hpy8I GTNNAC 2 cut(s) 101, 246
HpyAV CCTTC 2 cut(s) 232, 289
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4IV ACGT 2 cut(s) 86, 200
HpyCH4V TGCA 3 cut(s) 313, 353, 470
HpyF10VI GCNNNNNNNGC 2 cut(s) 331, 604
HpyF3I CTNAG 2 cut(s) 260, 447
HpySE526I ACGT 2 cut(s) 86, 200
Hsp92II CATG 2 cut(s) 45, 505
HspAI GCGC 1 cut(s) 592
Kzo9I GATC 1 cut(s) 481
LmnI GCTCC 3 cut(s) 66, 410, 589
Lsp1109I GCAGC 3 cut(s) 454, 464, 482
LweI GCATC 2 cut(s) 220, 334
MabI ACCWGGT 1 cut(s) 390
MaeI CTAG 3 cut(s) 234, 486, 554
MaeII ACGT 2 cut(s) 86, 200
MalI GATC 1 cut(s) 483
MboI GATC 1 cut(s) 481
MflI RGATCY 1 cut(s) 481
MhlI GDGCHC 1 cut(s) 92
MluCI AATT 4 cut(s) 205, 217, 289, 314
MmeI TCCRAC 1 cut(s) 141
MseI TTAA 1 cut(s) 216
MspR9I CCNGG 3 cut(s) 392, 408, 600
MvaI CCWGG 3 cut(s) 392, 408, 600
MvnI CGCG 1 cut(s) 594
MwoI GCNNNNNNNGC 2 cut(s) 331, 604
NdeII GATC 1 cut(s) 481
NlaIII CATG 2 cut(s) 45, 505
NlaIV GGNNCC 1 cut(s) 483
PfeI GAWTC 4 cut(s) 80, 113, 400, 458
PkrI GCNGC 3 cut(s) 454, 469, 472
PmaCI CACGTG 1 cut(s) 201
PmlI CACGTG 1 cut(s) 201
Ppu21I YACGTR 2 cut(s) 87, 201
PshBI ATTAAT 1 cut(s) 216
Psp6I CCWGG 3 cut(s) 390, 406, 598
PspCI CACGTG 1 cut(s) 201
PspFI CCCAGC 1 cut(s) 548
PspGI CCWGG 3 cut(s) 390, 406, 598
PspN4I GGNNCC 1 cut(s) 483
PspPI GGNCC 2 cut(s) 190, 596
PstI CTGCAG 1 cut(s) 472
PsuI RGATCY 1 cut(s) 481
SaqAI TTAA 1 cut(s) 216
SatI GCNGC 3 cut(s) 453, 468, 471
Sau3AI GATC 1 cut(s) 481
Sau96I GGNCC 2 cut(s) 190, 596
ScrFI CCNGG 3 cut(s) 392, 408, 600
SduI GDGCHC 1 cut(s) 92
SexAI ACCWGGT 1 cut(s) 390
SfaNI GCATC 2 cut(s) 220, 334
SfcI CTRYAG 3 cut(s) 27, 420, 468
Sse9I AATT 4 cut(s) 205, 217, 289, 314
SsiI CCGC 4 cut(s) 155, 308, 576, 594
SspMI CTAG 3 cut(s) 234, 486, 554
StyD4I CCNGG 3 cut(s) 390, 406, 598
StyI CCWWGG 1 cut(s) 485
TaaI ACNGT 1 cut(s) 250
TaiI ACGT 2 cut(s) 89, 203
TasI AATT 4 cut(s) 205, 217, 289, 314
TfiI GAWTC 4 cut(s) 80, 113, 400, 458
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TseI GCWGC 3 cut(s) 452, 467, 470
TspDTI ATGAA 1 cut(s) 270
VspI ATTAAT 1 cut(s) 216
XapI RAATTY 1 cut(s) 205
XmaJI CCTAGG 1 cut(s) 485
XspI CTAG 3 cut(s) 234, 486, 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.