FvH4_6g37970
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0022254
Physical Location & Seq
Reverse (-)
30038642 .. 30040124
1483 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g37970.t1

Sequence Viewer

Length: 309 bp
ATGCCTATGCTGAGCTCTGCCGCAACCGCCACGCTAAGTTGTATAGTCATGGCCCTCCATTCACTTTCATGCCTTACTGTCTGCAGCAACAATAGGTATGAGAATGATTTAATAGCAAGAGAATTAGAAAAGATGTTTCCCATTGTCGACCCCAAGGCAAAACCTACTGCCAGGCCCAAGATTTTTAATCGAAGACCCAAGCAAGGATTTCTGGAGAAACCATCTGAGAGGCTCTGCCTATTGGTTGTGATCAAGGTTGCTAACATATTGTTGATCAGATCAGGTCAGGTTATTCCGTTTTTGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

103

Amino Acids

11.38

Weight (kDa)

9.69

Isoelectric Point (pI)

50.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g37970
rosa_samantha Rh1AG224700 Rh1CG209400 Rh1DG220500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 147
AciI CCGC 2 cut(s) 21, 27
AfiI CCNNNNNNNGG 1 cut(s) 203
AjnI CCWGG 1 cut(s) 170
AluBI AGCT 1 cut(s) 15
AluI AGCT 1 cut(s) 15
Alw21I GWGCWC 1 cut(s) 17
AoxI GGCC 2 cut(s) 51, 173
ApeKI GCWGC 1 cut(s) 84
AspS9I GGNCC 2 cut(s) 52, 174
BanII GRGCYC 1 cut(s) 17
BbsI GAAGAC 1 cut(s) 199
Bbv12I GWGCWC 1 cut(s) 17
BbvI GCAGC 1 cut(s) 96
BccI CCATC 1 cut(s) 229
BciT130I CCWGG 1 cut(s) 172
BclI TGATCA 2 cut(s) 249, 273
BfmI CTRYAG 1 cut(s) 82
BisI GCNGC 2 cut(s) 21, 85
BlpI GCTNAGC 1 cut(s) 11
BlsI GCNGC 2 cut(s) 22, 86
Bme1390I CCNGG 1 cut(s) 172
BmgT120I GGNCC 2 cut(s) 52, 174
BmrFI CCNGG 1 cut(s) 172
BpiI GAAGAC 1 cut(s) 199
BpmI CTGGAG 1 cut(s) 233
Bpu1102I GCTNAGC 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 153
Bsc4I CCNNNNNNNGG 1 cut(s) 203
BseBI CCWGG 1 cut(s) 172
BseDI CCNNGG 1 cut(s) 153
BseLI CCNNNNNNNGG 1 cut(s) 203
BseMII CTCAG 1 cut(s) 216
BseXI GCAGC 1 cut(s) 96
BshFI GGCC 2 cut(s) 53, 175
BsiHKAI GWGCWC 1 cut(s) 17
BslI CCNNNNNNNGG 1 cut(s) 203
BsnI GGCC 2 cut(s) 53, 175
Bsp1286I GDGCHC 1 cut(s) 17
Bsp143I GATC 3 cut(s) 249, 273, 278
Bsp1720I GCTNAGC 1 cut(s) 11
BspACI CCGC 2 cut(s) 21, 27
BspANI GGCC 2 cut(s) 53, 175
BspCNI CTCAG 1 cut(s) 217
BspMAI CTGCAG 1 cut(s) 86
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 3 cut(s) 249, 273, 278
BssT1I CCWWGG 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 172
Bst4CI ACNGT 1 cut(s) 79
BstDEI CTNAG 3 cut(s) 11, 35, 225
BstKTI GATC 3 cut(s) 252, 276, 281
BstMBI GATC 3 cut(s) 249, 273, 278
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstNI CCWGG 1 cut(s) 172
BstSCI CCNGG 1 cut(s) 170
BstSFI CTRYAG 1 cut(s) 82
BstV1I GCAGC 1 cut(s) 96
BstV2I GAAGAC 1 cut(s) 199
BsuRI GGCC 2 cut(s) 53, 175
Cfr13I GGNCC 2 cut(s) 52, 174
CviAII CATG 2 cut(s) 49, 69
CviJI RGCY 4 cut(s) 15, 53, 175, 232
CviKI_1 RGCY 4 cut(s) 15, 53, 175, 232
DdeI CTNAG 3 cut(s) 11, 35, 225
DpnI GATC 3 cut(s) 251, 275, 280
DpnII GATC 3 cut(s) 249, 273, 278
Ecl136II GAGCTC 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 153
Eco24I GRGCYC 1 cut(s) 17
Eco53kI GAGCTC 1 cut(s) 15
EcoICRI GAGCTC 1 cut(s) 15
EcoRII CCWGG 1 cut(s) 170
EcoT14I CCWWGG 1 cut(s) 153
EcoT38I GRGCYC 1 cut(s) 17
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 2 cut(s) 52, 72
FaiI YATR 6 cut(s) 8, 44, 50, 70, 99, 266
FatI CATG 2 cut(s) 48, 68
FbaI TGATCA 2 cut(s) 249, 273
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 2 cut(s) 21, 85
FriOI GRGCYC 1 cut(s) 17
Fsp4HI GCNGC 2 cut(s) 21, 85
GluI GCNGC 2 cut(s) 21, 85
GsuI CTGGAG 1 cut(s) 233
HaeIII GGCC 2 cut(s) 53, 175
Hin1II CATG 2 cut(s) 52, 72
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 2 cut(s) 226, 278
Hpy188III TCNNGA 1 cut(s) 212
Hpy8I GTNNAC 1 cut(s) 148
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4V TGCA 1 cut(s) 84
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
HpyF3I CTNAG 3 cut(s) 11, 35, 225
Hsp92II CATG 2 cut(s) 52, 72
Ksp22I TGATCA 2 cut(s) 249, 273
Kzo9I GATC 3 cut(s) 249, 273, 278
LpnPI CCDG 5 cut(s) 157, 184, 197, 267, 272
Lsp1109I GCAGC 1 cut(s) 96
MalI GATC 3 cut(s) 251, 275, 280
MboI GATC 3 cut(s) 249, 273, 278
MboII GAAGA 1 cut(s) 204
MhlI GDGCHC 1 cut(s) 17
MluCI AATT 1 cut(s) 122
MnlI CCTC 2 cut(s) 65, 222
MseI TTAA 2 cut(s) 110, 186
MslI CAYNNNNRTG 1 cut(s) 67
MspR9I CCNGG 1 cut(s) 172
MvaI CCWGG 1 cut(s) 172
MwoI GCNNNNNNNGC 1 cut(s) 26
NdeII GATC 3 cut(s) 249, 273, 278
NlaIII CATG 2 cut(s) 52, 72
PkrI GCNGC 2 cut(s) 22, 86
Psp124BI GAGCTC 1 cut(s) 17
Psp6I CCWGG 1 cut(s) 170
PspGI CCWGG 1 cut(s) 170
PspPI GGNCC 2 cut(s) 52, 174
PstI CTGCAG 1 cut(s) 86
RseI CAYNNNNRTG 1 cut(s) 67
SacI GAGCTC 1 cut(s) 17
SalI GTCGAC 1 cut(s) 146
SaqAI TTAA 2 cut(s) 110, 186
SatI GCNGC 2 cut(s) 21, 85
Sau3AI GATC 3 cut(s) 249, 273, 278
Sau96I GGNCC 2 cut(s) 52, 174
ScrFI CCNGG 1 cut(s) 172
SduI GDGCHC 1 cut(s) 17
SetI ASST 6 cut(s) 17, 98, 166, 258, 286, 291
SfcI CTRYAG 1 cut(s) 82
SmiMI CAYNNNNRTG 1 cut(s) 67
Sse9I AATT 1 cut(s) 122
SsiI CCGC 2 cut(s) 21, 27
SstI GAGCTC 1 cut(s) 17
StyD4I CCNGG 1 cut(s) 170
StyI CCWWGG 1 cut(s) 153
TaaI ACNGT 1 cut(s) 79
TaqI TCGA 2 cut(s) 147, 190
TasI AATT 1 cut(s) 122
TauI GCSGC 1 cut(s) 23
Tru1I TTAA 2 cut(s) 110, 186
Tru9I TTAA 2 cut(s) 110, 186
TseI GCWGC 1 cut(s) 84
TspDTI ATGAA 1 cut(s) 57
TspGWI ACGGA 1 cut(s) 285
XmiI GTMKAC 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.