Rh1AG224700
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0022254
Physical Location & Seq
Reverse (-)
42672067 .. 42683866
11800 bp
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UTR
Exon/CDS
Intron
Rh1AG224700.1

Sequence Viewer

Length: 474 bp
ATGAATATCAAAGAAAGCAAGAAAGATGGGCAAGATTTGAAAGCAAGAGAATCAGAGAAGATGTTTCCCATTGTCGACCCCAAGGCAAAATCTACTGCCAGCAGGCCCAAGATTTTTGTTAGTCTTCTGTGGAAGCAGCTCAACCACCTTGGAGTGGATGATACGAATCAGGAGACAGAGGAGGTCATAGACTGTTCAGATCTACTGCTAGCGATTGCATTGTGGAAGACCGGAGTTCATTCGTTGCGTTTCAAGCCAATACTGGTGTTGAGTAATCATTTCTTTTCGGGCATATTGTATTGCATATCATTCAGTTCTCTTGATGTATTGGTAAATGAGACTAAAGCTATAGATGATTATGCCAGTCTGAAGTCTAAGGCAGCAGAATCAAATGCTGCAGCAAATGTGGATCCTAGGATGGAGGCTATCATGGAGAAAATGTTGGGCAAGATCATGATCAAAGACATAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

157

Amino Acids

17.57

Weight (kDa)

6.3

Isoelectric Point (pI)

28.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g37970
rosa_samantha Rh1AG224700 Rh1CG209400 Rh1DG220500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 75
AclWI GGATC 2 cut(s) 404, 417
AcuI CTGAAG 1 cut(s) 389
AfiI CCNNNNNNNGG 1 cut(s) 154
AgsI TTSAA 2 cut(s) 40, 253
AluBI AGCT 2 cut(s) 139, 347
AluI AGCT 2 cut(s) 139, 347
Alw26I GTCTC 2 cut(s) 167, 332
AlwI GGATC 2 cut(s) 404, 417
AoxI GGCC 1 cut(s) 104
ApeKI GCWGC 4 cut(s) 136, 380, 395, 398
AspA2I CCTAGG 1 cut(s) 413
AspS9I GGNCC 1 cut(s) 105
AsuNHI GCTAGC 1 cut(s) 208
AvrII CCTAGG 1 cut(s) 413
BamHI GGATCC 1 cut(s) 409
BbsI GAAGAC 2 cut(s) 116, 233
BbvI GCAGC 4 cut(s) 148, 382, 392, 410
BccI CCATC 2 cut(s) 20, 412
BclI TGATCA 1 cut(s) 456
BcoDI GTCTC 2 cut(s) 167, 332
BfaI CTAG 2 cut(s) 209, 414
BfmI CTRYAG 2 cut(s) 348, 396
BglII AGATCT 1 cut(s) 199
BisI GCNGC 4 cut(s) 137, 381, 396, 399
BlnI CCTAGG 1 cut(s) 413
BlsI GCNGC 4 cut(s) 138, 382, 397, 400
BmgT120I GGNCC 1 cut(s) 105
BmiI GGNNCC 1 cut(s) 411
BmtI GCTAGC 1 cut(s) 212
BpiI GAAGAC 2 cut(s) 116, 233
BsaBI GATNNNNATC 2 cut(s) 165, 455
BsaJI CCNNGG 3 cut(s) 81, 148, 413
BsaWI WCCGGW 1 cut(s) 230
BsaXI ACNNNNNCTCC 2 cut(s) 425, 455
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse1I ACTGG 2 cut(s) 267, 363
Bse8I GATNNNNATC 2 cut(s) 165, 455
BseDI CCNNGG 3 cut(s) 81, 148, 413
BseGI GGATG 2 cut(s) 163, 423
BseJI GATNNNNATC 2 cut(s) 165, 455
BseLI CCNNNNNNNGG 1 cut(s) 154
BseNI ACTGG 2 cut(s) 267, 363
BseRI GAGGAG 1 cut(s) 194
BseXI GCAGC 4 cut(s) 148, 382, 392, 410
BshFI GGCC 1 cut(s) 106
BsiSI CCGG 1 cut(s) 231
BslI CCNNNNNNNGG 1 cut(s) 154
BsmAI GTCTC 2 cut(s) 167, 332
BsnI GGCC 1 cut(s) 106
Bsp143I GATC 4 cut(s) 199, 409, 450, 456
BspANI GGCC 1 cut(s) 106
BspHI TCATGA 1 cut(s) 453
BspLI GGNNCC 1 cut(s) 411
BspMAI CTGCAG 1 cut(s) 400
BspOI GCTAGC 1 cut(s) 212
BspPI GGATC 2 cut(s) 404, 417
BsrI ACTGG 2 cut(s) 267, 363
BssECI CCNNGG 3 cut(s) 81, 148, 413
BssMI GATC 4 cut(s) 199, 409, 450, 456
BssT1I CCWWGG 3 cut(s) 81, 148, 413
Bst4CI ACNGT 1 cut(s) 194
BstC8I GCNNGC 3 cut(s) 100, 104, 210
BstDEI CTNAG 1 cut(s) 375
BstF5I GGATG 2 cut(s) 163, 423
BstKTI GATC 4 cut(s) 202, 412, 453, 459
BstMAI GTCTC 2 cut(s) 167, 332
BstMBI GATC 4 cut(s) 199, 409, 450, 456
BstMWI GCNNNNNNNGC 1 cut(s) 253
BstSFI CTRYAG 2 cut(s) 348, 396
BstV1I GCAGC 4 cut(s) 148, 382, 392, 410
BstV2I GAAGAC 2 cut(s) 116, 233
BstX2I RGATCY 2 cut(s) 199, 409
BstYI RGATCY 2 cut(s) 199, 409
BsuRI GGCC 1 cut(s) 106
BtsCI GGATG 2 cut(s) 163, 423
Cac8I GCNNGC 3 cut(s) 100, 104, 210
CciI TCATGA 1 cut(s) 453
Cfr13I GGNCC 1 cut(s) 105
CviAII CATG 2 cut(s) 430, 454
CviJI RGCY 5 cut(s) 106, 139, 256, 347, 425
CviKI_1 RGCY 5 cut(s) 106, 139, 256, 347, 425
DdeI CTNAG 1 cut(s) 375
DpnI GATC 4 cut(s) 201, 411, 452, 458
DpnII GATC 4 cut(s) 199, 409, 450, 456
Eco130I CCWWGG 3 cut(s) 81, 148, 413
Eco57I CTGAAG 1 cut(s) 389
EcoT14I CCWWGG 3 cut(s) 81, 148, 413
ErhI CCWWGG 3 cut(s) 81, 148, 413
FaeI CATG 2 cut(s) 433, 457
FaiI YATR 8 cut(s) 188, 293, 305, 350, 360, 431, 455, 467
FatI CATG 2 cut(s) 429, 453
FbaI TGATCA 1 cut(s) 456
FblI GTMKAC 1 cut(s) 75
Fnu4HI GCNGC 4 cut(s) 137, 381, 396, 399
FokI GGATG 2 cut(s) 170, 430
Fsp4HI GCNGC 4 cut(s) 137, 381, 396, 399
FspBI CTAG 2 cut(s) 209, 414
GluI GCNGC 4 cut(s) 137, 381, 396, 399
HaeIII GGCC 1 cut(s) 106
HapII CCGG 1 cut(s) 231
Hin1II CATG 2 cut(s) 433, 457
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HinfI GANTC 3 cut(s) 50, 166, 386
HpaII CCGG 1 cut(s) 231
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 3 cut(s) 55, 199, 369
Hpy188III TCNNGA 3 cut(s) 170, 320, 454
Hpy8I GTNNAC 1 cut(s) 76
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4V TGCA 3 cut(s) 218, 303, 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 253
HpyF3I CTNAG 1 cut(s) 375
Hsp92II CATG 2 cut(s) 433, 457
Ksp22I TGATCA 1 cut(s) 456
Kzo9I GATC 4 cut(s) 199, 409, 450, 456
LpnPI CCDG 6 cut(s) 88, 112, 155, 244, 248, 376
Lsp1109I GCAGC 4 cut(s) 148, 382, 392, 410
MaeI CTAG 2 cut(s) 209, 414
MalI GATC 4 cut(s) 201, 411, 452, 458
MboI GATC 4 cut(s) 199, 409, 450, 456
MboII GAAGA 3 cut(s) 70, 116, 238
MflI RGATCY 2 cut(s) 199, 409
MluCI AATT 1 cut(s) 469
MnlI CCTC 3 cut(s) 172, 175, 415
MseI TTAA 1 cut(s) 472
MspI CCGG 1 cut(s) 231
MwoI GCNNNNNNNGC 1 cut(s) 253
NdeII GATC 4 cut(s) 199, 409, 450, 456
NheI GCTAGC 1 cut(s) 208
NlaIII CATG 2 cut(s) 433, 457
NlaIV GGNNCC 1 cut(s) 411
PagI TCATGA 1 cut(s) 453
PfeI GAWTC 3 cut(s) 50, 166, 386
PkrI GCNGC 4 cut(s) 138, 382, 397, 400
PspN4I GGNNCC 1 cut(s) 411
PspPI GGNCC 1 cut(s) 105
PstI CTGCAG 1 cut(s) 400
PsuI RGATCY 2 cut(s) 199, 409
SalI GTCGAC 1 cut(s) 74
SaqAI TTAA 1 cut(s) 472
SatI GCNGC 4 cut(s) 137, 381, 396, 399
Sau3AI GATC 4 cut(s) 199, 409, 450, 456
Sau96I GGNCC 1 cut(s) 105
SetI ASST 4 cut(s) 141, 150, 186, 349
SfcI CTRYAG 2 cut(s) 348, 396
Sse9I AATT 1 cut(s) 469
SspMI CTAG 2 cut(s) 209, 414
StyI CCWWGG 3 cut(s) 81, 148, 413
TaaI ACNGT 1 cut(s) 194
TaqI TCGA 1 cut(s) 75
TasI AATT 1 cut(s) 469
TfiI GAWTC 3 cut(s) 50, 166, 386
Tru1I TTAA 1 cut(s) 472
Tru9I TTAA 1 cut(s) 472
TseI GCWGC 4 cut(s) 136, 380, 395, 398
TspDTI ATGAA 2 cut(s) 17, 227
XmaJI CCTAGG 1 cut(s) 413
XmiI GTMKAC 1 cut(s) 75
XspI CTAG 2 cut(s) 209, 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.