Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0018353

Physical Location & Seq

Genomic Coordinates Reverse (-)

13423789 .. 13424397

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0151800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGAGAGCTCAAATCATCAACAACATGCAGCACTGCTCTGCAGCCCAGGAATGGGCCATCTCATCCCTTTGCTCGAGCTCGGAAAGCGACTTGTCGTCCACCAAAACTTCATCGTCCCTTCCAACACTTCCAAGGTCGAAACCGAGCTCCTCCAGGCAGACGCCATCCTCGAAACCATCGAACTCCCGCCACCAGACATTTCCGGGGTCGTTAACCCTGATGCTGACGTCGTCACCCGCATAGCGGCAATGATGCGAGAAGTACGACCAGCGTTTCGGTCAGTTCTGCACGACATGAAGCTCTGTCCTACCATGCTCATTGTGGACTTCTTCGGCACAGAATCTCTGCCCATTGCCGAAGAGTTTGGGATTTCCAAGTACGTCTACATTGCTTCCAATGCATGGTTCCTTTCTCTCATGGTTTATTCTCCTACACTGGATGAAGAAGTGAAAGGAGAATTCGTTGACGATAAAGAGCCGCTGAAAATCCCTGGTTGTAGGTCTGTACAACCCCAAATAGACATCGTCGACGGCATGCAGGACAGAACTAGCCAACCAACAATACAACGAGCATTTGGGGATCGCCAGACGGCTCTTGAAGGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0034641 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098687 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

202

Amino Acids

22.4

Weight (kDa)

4.83

Isoelectric Point (pI)

34.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018353)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g17811
rosa_laevigata	RLG00000017652
rosa_multiflora	Rmu_sc0007406.1_g000005 Rmu_sc0013358.1_g000004
rosa_roxburghii	Rroxscaffold_2G00135430
rosa_rugosa	Rorug02G0151800
rosa_samantha	Rh2AG200200 Rh2BG212900 Rh2CG204900 Rh2DG207800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	231
AccB7I	CCANNNNNTGG	1 cut(s)	402
AccI	GTMKAC	2 cut(s)	384, 528
AciI	CCGC	4 cut(s)	188, 238, 245, 479
AclWI	GGATC	1 cut(s)	588
AcsI	RAATTY	1 cut(s)	458
AcyI	GRCGYC	2 cut(s)	162, 228
AfaI	GTAC	3 cut(s)	264, 380, 507
AfiI	CCNNNNNNNGG	4 cut(s)	52, 53, 244, 402
AgsI	TTSAA	1 cut(s)	599
AhdI	GACNNNNNGTC	1 cut(s)	95
AjnI	CCWGG	3 cut(s)	46, 153, 490
AjuI	GAANNNNNNNTTGG	2 cut(s)	389, 421
AluBI	AGCT	4 cut(s)	9, 79, 148, 301
AluI	AGCT	4 cut(s)	9, 79, 148, 301
Alw21I	GWGCWC	3 cut(s)	11, 81, 150
AlwI	GGATC	1 cut(s)	588
Ama87I	CYCGRG	1 cut(s)	74
AoxI	GGCC	1 cut(s)	55
ApeKI	GCWGC	2 cut(s)	29, 42
ApoI	RAATTY	1 cut(s)	458
ArsI	GACNNNNNNTTYG	2 cut(s)	258, 290
AspS9I	GGNCC	1 cut(s)	55
AsuC2I	CCSGG	1 cut(s)	205
AsuHPI	GGTGA	1 cut(s)	226
AvaI	CYCGRG	1 cut(s)	74
BanII	GRGCYC	3 cut(s)	11, 81, 150
Bbv12I	GWGCWC	3 cut(s)	11, 81, 150
BbvI	GCAGC	2 cut(s)	41, 54
BccI	CCATC	3 cut(s)	66, 173, 185
BceAI	ACGGC	2 cut(s)	547, 606
BciT130I	CCWGG	3 cut(s)	48, 155, 492
BcnI	CCSGG	1 cut(s)	205
BfaI	CTAG	1 cut(s)	549
BfmI	CTRYAG	1 cut(s)	40
BisI	GCNGC	4 cut(s)	30, 43, 246, 479
BlsI	GCNGC	4 cut(s)	31, 44, 247, 480
Bme1390I	CCNGG	4 cut(s)	48, 155, 205, 492
BmeRI	GACNNNNNGTC	1 cut(s)	95
BmeT110I	CYCGRG	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	407
BmrFI	CCNGG	4 cut(s)	48, 155, 205, 492
BmsI	GCATC	2 cut(s)	211, 243
BpmI	CTGGAG	1 cut(s)	137
BpuMI	CCSGG	1 cut(s)	205
BsaHI	GRCGYC	2 cut(s)	162, 228
BsaJI	CCNNGG	4 cut(s)	46, 132, 204, 490
BsaXI	ACNNNNNCTCC	2 cut(s)	447, 477
Bsc4I	CCNNNNNNNGG	4 cut(s)	52, 53, 244, 402
Bse1I	ACTGG	1 cut(s)	441
Bse3DI	GCAATG	3 cut(s)	255, 351, 387
BseBI	CCWGG	3 cut(s)	48, 155, 492
BseDI	CCNNGG	4 cut(s)	46, 132, 204, 490
BseGI	GGATG	3 cut(s)	63, 165, 445
BseLI	CCNNNNNNNGG	4 cut(s)	52, 53, 244, 402
BseMI	GCAATG	3 cut(s)	255, 351, 387
BseNI	ACTGG	1 cut(s)	441
BseRI	GAGGAG	1 cut(s)	140
BseXI	GCAGC	2 cut(s)	41, 54
BsgI	GTGCAG	1 cut(s)	272
BshFI	GGCC	1 cut(s)	57
BsiHKAI	GWGCWC	3 cut(s)	11, 81, 150
BsiHKCI	CYCGRG	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	204
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	4 cut(s)	52, 53, 244, 402
BsmFI	GGGAC	1 cut(s)	101
BsnI	GGCC	1 cut(s)	57
BsoBI	CYCGRG	1 cut(s)	74
Bsp1286I	GDGCHC	3 cut(s)	11, 81, 150
Bsp1407I	TGTACA	1 cut(s)	505
Bsp143I	GATC	1 cut(s)	580
BspACI	CCGC	4 cut(s)	188, 238, 245, 479
BspANI	GGCC	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	407
BspMAI	CTGCAG	1 cut(s)	44
BspPI	GGATC	1 cut(s)	588
BsrDI	GCAATG	3 cut(s)	255, 351, 387
BsrGI	TGTACA	1 cut(s)	505
BsrI	ACTGG	1 cut(s)	441
BssECI	CCNNGG	4 cut(s)	46, 132, 204, 490
BssMI	GATC	1 cut(s)	580
BssNI	GRCGYC	2 cut(s)	162, 228
BssT1I	CCWWGG	1 cut(s)	132
Bst2UI	CCWGG	3 cut(s)	48, 155, 492
Bst6I	CTCTTC	1 cut(s)	354
BstACI	GRCGYC	2 cut(s)	162, 228
BstAUI	TGTACA	1 cut(s)	505
BstC8I	GCNNGC	1 cut(s)	536
BstF5I	GGATG	3 cut(s)	63, 165, 445
BstKTI	GATC	1 cut(s)	583
BstMBI	GATC	1 cut(s)	580
BstMWI	GCNNNNNNNGC	2 cut(s)	85, 398
BstNI	CCWGG	3 cut(s)	48, 155, 492
BstNSI	RCATGY	2 cut(s)	29, 538
BstSCI	CCNGG	4 cut(s)	46, 153, 203, 490
BstSFI	CTRYAG	1 cut(s)	40
BstV1I	GCAGC	2 cut(s)	41, 54
BsuRI	GGCC	1 cut(s)	57
BtsCI	GGATG	3 cut(s)	63, 165, 445
BtsI	GCAGTG	1 cut(s)	32
BtsIMutI	CAGTG	2 cut(s)	32, 434
Cac8I	GCNNGC	1 cut(s)	536
Cfr13I	GGNCC	1 cut(s)	55
CseI	GACGC	1 cut(s)	170
Csp6I	GTAC	3 cut(s)	263, 379, 506
CviAII	CATG	6 cut(s)	26, 295, 313, 402, 418, 535
CviJI	RGCY	9 cut(s)	9, 45, 57, 79, 148, 301, 478, 552, 593
CviKI_1	RGCY	9 cut(s)	9, 45, 57, 79, 148, 301, 478, 552, 593
CviQI	GTAC	3 cut(s)	263, 379, 506
DpnI	GATC	1 cut(s)	582
DpnII	GATC	1 cut(s)	580
DriI	GACNNNNNGTC	1 cut(s)	95
Eam1104I	CTCTTC	1 cut(s)	354
Eam1105I	GACNNNNNGTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	354
Ecl136II	GAGCTC	3 cut(s)	9, 79, 148
Eco130I	CCWWGG	1 cut(s)	132
Eco24I	GRGCYC	3 cut(s)	11, 81, 150
Eco53kI	GAGCTC	3 cut(s)	9, 79, 148
Eco88I	CYCGRG	1 cut(s)	74
EcoICRI	GAGCTC	3 cut(s)	9, 79, 148
EcoRI	GAATTC	1 cut(s)	458
EcoRII	CCWGG	3 cut(s)	46, 153, 490
EcoT14I	CCWWGG	1 cut(s)	132
EcoT22I	ATGCAT	1 cut(s)	403
EcoT38I	GRGCYC	3 cut(s)	11, 81, 150
ErhI	CCWWGG	1 cut(s)	132
FaeI	CATG	6 cut(s)	29, 298, 316, 405, 421, 538
FaiI	YATR	7 cut(s)	27, 242, 296, 314, 403, 419, 536
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	6 cut(s)	25, 294, 312, 401, 417, 534
FauI	CCCGC	2 cut(s)	195, 245
FblI	GTMKAC	2 cut(s)	384, 528
Fnu4HI	GCNGC	4 cut(s)	30, 43, 246, 479
FokI	GGATG	3 cut(s)	50, 152, 452
FriOI	GRGCYC	3 cut(s)	11, 81, 150
Fsp4HI	GCNGC	4 cut(s)	30, 43, 246, 479
FspBI	CTAG	1 cut(s)	549
GluI	GCNGC	4 cut(s)	30, 43, 246, 479
GsuI	CTGGAG	1 cut(s)	137
HaeIII	GGCC	1 cut(s)	57
HapII	CCGG	1 cut(s)	204
HgaI	GACGC	1 cut(s)	170
Hin1I	GRCGYC	2 cut(s)	162, 228
Hin1II	CATG	6 cut(s)	29, 298, 316, 405, 421, 538
HincII	GTYRAC	3 cut(s)	214, 466, 529
HindII	GTYRAC	3 cut(s)	214, 466, 529
HinfI	GANTC	1 cut(s)	341
HpaI	GTTAAC	1 cut(s)	214
HpaII	CCGG	1 cut(s)	204
HphI	GGTGA	1 cut(s)	226
Hpy166II	GTNNAC	6 cut(s)	100, 214, 325, 385, 466, 529
Hpy188I	TCNGA	1 cut(s)	83
Hpy188III	TCNNGA	1 cut(s)	596
Hpy8I	GTNNAC	6 cut(s)	100, 214, 325, 385, 466, 529
Hpy99I	CGWCG	3 cut(s)	233, 530, 533
HpyAV	CCTTC	2 cut(s)	129, 593
HpyCH4IV	ACGT	2 cut(s)	228, 381
HpyCH4V	TGCA	5 cut(s)	29, 42, 289, 401, 538
HpyF10VI	GCNNNNNNNGC	2 cut(s)	85, 398
HpySE526I	ACGT	2 cut(s)	228, 381
Hsp92I	GRCGYC	2 cut(s)	162, 228
Hsp92II	CATG	6 cut(s)	29, 298, 316, 405, 421, 538
KspAI	GTTAAC	1 cut(s)	214
Kzo9I	GATC	1 cut(s)	580
LmnI	GCTCC	1 cut(s)	153
Lsp1109I	GCAGC	2 cut(s)	41, 54
LweI	GCATC	2 cut(s)	211, 243
MaeI	CTAG	1 cut(s)	549
MaeII	ACGT	2 cut(s)	228, 381
MaeIII	GTNAC	1 cut(s)	232
MalI	GATC	1 cut(s)	582
MboI	GATC	1 cut(s)	580
MboII	GAAGA	3 cut(s)	322, 371, 455
MhlI	GDGCHC	3 cut(s)	11, 81, 150
MluCI	AATT	1 cut(s)	458
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	2 cut(s)	161, 179
Mph1103I	ATGCAT	1 cut(s)	403
MseI	TTAA	1 cut(s)	213
MspA1I	CMGCKG	1 cut(s)	481
MspI	CCGG	1 cut(s)	204
MspR9I	CCNGG	4 cut(s)	48, 155, 205, 492
MvaI	CCWGG	3 cut(s)	48, 155, 492
MwoI	GCNNNNNNNGC	2 cut(s)	85, 398
NciI	CCSGG	1 cut(s)	205
NdeII	GATC	1 cut(s)	580
NlaIII	CATG	6 cut(s)	29, 298, 316, 405, 421, 538
NlaIV	GGNNCC	1 cut(s)	407
NmuCI	GTSAC	1 cut(s)	232
NsiI	ATGCAT	1 cut(s)	403
NspI	RCATGY	2 cut(s)	29, 538
PaeI	GCATGC	1 cut(s)	538
PaeR7I	CTCGAG	1 cut(s)	74
PcsI	WCGNNNNNNNCGW	2 cut(s)	168, 177
PfeI	GAWTC	1 cut(s)	341
PflFI	GACNNNGTC	2 cut(s)	230, 524
PflMI	CCANNNNNTGG	1 cut(s)	402
PkrI	GCNGC	4 cut(s)	31, 44, 247, 480
Psp124BI	GAGCTC	3 cut(s)	11, 81, 150
Psp6I	CCWGG	3 cut(s)	46, 153, 490
PspGI	CCWGG	3 cut(s)	46, 153, 490
PspN4I	GGNNCC	1 cut(s)	407
PspPI	GGNCC	1 cut(s)	55
PspXI	VCTCGAGB	1 cut(s)	74
PstI	CTGCAG	1 cut(s)	44
PsyI	GACNNNGTC	2 cut(s)	230, 524
RsaI	GTAC	3 cut(s)	264, 380, 507
RsaNI	GTAC	3 cut(s)	263, 379, 506
SacI	GAGCTC	3 cut(s)	11, 81, 150
SalI	GTCGAC	1 cut(s)	527
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	4 cut(s)	30, 43, 246, 479
Sau3AI	GATC	1 cut(s)	580
Sau96I	GGNCC	1 cut(s)	55
ScrFI	CCNGG	4 cut(s)	48, 155, 205, 492
SduI	GDGCHC	3 cut(s)	11, 81, 150
SetI	ASST	8 cut(s)	11, 81, 138, 150, 231, 303, 384, 503
SfaNI	GCATC	2 cut(s)	211, 243
SfcI	CTRYAG	1 cut(s)	40
Sfr274I	CTCGAG	1 cut(s)	74
SgrDI	CGTCGACG	1 cut(s)	527
SlaI	CTCGAG	1 cut(s)	74
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
SphI	GCATGC	1 cut(s)	538
Sse9I	AATT	1 cut(s)	458
SsiI	CCGC	4 cut(s)	188, 238, 245, 479
SspMI	CTAG	1 cut(s)	549
SstI	GAGCTC	3 cut(s)	11, 81, 150
StyD4I	CCNGG	4 cut(s)	46, 153, 203, 490
StyI	CCWWGG	1 cut(s)	132
TaiI	ACGT	2 cut(s)	231, 384
TaqI	TCGA	5 cut(s)	75, 138, 171, 180, 528
TaqII	GACCGA	1 cut(s)	267
TasI	AATT	1 cut(s)	458
TatI	WGTACW	1 cut(s)	505
TauI	GCSGC	2 cut(s)	248, 481
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	2 cut(s)	39, 441
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	2 cut(s)	29, 42
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	3 cut(s)	100, 311, 456
TspRI	CASTG	2 cut(s)	39, 441
Tth111I	GACNNNGTC	2 cut(s)	230, 524
Van91I	CCANNNNNTGG	1 cut(s)	402
XapI	RAATTY	1 cut(s)	458
XceI	RCATGY	2 cut(s)	29, 538
XcmI	CCANNNNNNNNNTGG	1 cut(s)	319
XhoI	CTCGAG	1 cut(s)	74
XmiI	GTMKAC	2 cut(s)	384, 528
XspI	CTAG	1 cut(s)	549
ZraI	GACGTC	1 cut(s)	229
Zsp2I	ATGCAT	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.