Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0018353

Physical Location & Seq

Genomic Coordinates Reverse (-)

10352648 .. 10354438

Gene Structure 1791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g17811.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCAACCAAGGCTCATCTCCATCGCCGCCGAGCTCTGCAAATATATTGGATCGGCGATTCCATCTTGTCGAATAATCTAATCGGACAAAAGCGACGTCATCTTGACGAGCATAGGACACAATTCTTAACATTAACCATGGTTTCAATTGTTAACAACGTTAATATTGAAGTTAGTGCCGTGGAGAGCCAAAAACCGCAAAAATGGACAGCGGAGGAAGAAGCCCTATTAGCCGGAGTAGCAACGCACGGAGTTGACAATTGGAAGACCATTCTCGAAGATTCCGAGTTTGGCTCTATCCTCACTCGCCGCTCCAACATGAAACTCAAGTATAAGTGGAGGCACTGGAGTCGTAGACCTTCTGTAAACTCACCTTCTATGGCTGATGAAGCACTAGAGGAGGCAGAGAGTGTTTCAGACACGAAAGAGGAAGATAGAGATTCGGAGACGAAGAAGAGGAAGAGAATGCCGGCAGAAGACACCGAACCGAGTACATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0034641 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098687 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

167

Amino Acids

19.16

Weight (kDa)

7.03

Isoelectric Point (pI)

76.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018353)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g17811
rosa_laevigata	RLG00000017652
rosa_multiflora	Rmu_sc0007406.1_g000005 Rmu_sc0013358.1_g000004
rosa_roxburghii	Rroxscaffold_2G00135430
rosa_rugosa	Rorug02G0151800
rosa_samantha	Rh2AG200200 Rh2BG212900 Rh2CG204900 Rh2DG207800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	100
AccBSI	CCGCTC	1 cut(s)	312
AccI	GTMKAC	1 cut(s)	355
AciI	CCGC	4 cut(s)	28, 197, 212, 310
AclI	AACGTT	1 cut(s)	159
AclWI	GGATC	1 cut(s)	59
AcyI	GRCGYC	1 cut(s)	97
AfaI	GTAC	1 cut(s)	493
AgsI	TTSAA	2 cut(s)	147, 170
AluBI	AGCT	1 cut(s)	35
AluI	AGCT	1 cut(s)	35
Alw21I	GWGCWC	1 cut(s)	37
Alw26I	GTCTC	1 cut(s)	440
AlwI	GGATC	1 cut(s)	59
ArsI	GACNNNNNNTTYG	2 cut(s)	82, 114
AsuHPI	GGTGA	1 cut(s)	363
BanII	GRGCYC	1 cut(s)	37
BbsI	GAAGAC	2 cut(s)	272, 483
Bbv12I	GWGCWC	1 cut(s)	37
BccI	CCATC	2 cut(s)	30, 71
BceAI	ACGGC	1 cut(s)	164
BcgI	CGANNNNNNTGC	2 cut(s)	332, 366
BcoDI	GTCTC	1 cut(s)	440
BfaI	CTAG	2 cut(s)	395, 499
BisI	GCNGC	2 cut(s)	28, 310
BlsI	GCNGC	2 cut(s)	29, 311
BpiI	GAAGAC	2 cut(s)	272, 483
BplI	GAGNNNNNCTC	2 cut(s)	278, 310
BpmI	CTGGAG	1 cut(s)	367
BpuEI	CTTGAG	1 cut(s)	311
BsaHI	GRCGYC	1 cut(s)	97
BsaJI	CCNNGG	3 cut(s)	9, 138, 180
Bse118I	RCCGGY	1 cut(s)	469
Bse1I	ACTGG	1 cut(s)	350
BseDI	CCNNGG	3 cut(s)	9, 138, 180
BseNI	ACTGG	1 cut(s)	350
BseRI	GAGGAG	1 cut(s)	413
BsiHKAI	GWGCWC	1 cut(s)	37
BsiSI	CCGG	2 cut(s)	234, 470
BsmAI	GTCTC	1 cut(s)	440
BsmBI	CGTCTC	1 cut(s)	440
BsmI	GAATGC	1 cut(s)	471
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp143I	GATC	1 cut(s)	51
Bsp19I	CCATGG	1 cut(s)	138
BspACI	CCGC	4 cut(s)	28, 197, 212, 310
BspPI	GGATC	1 cut(s)	59
BsrBI	CCGCTC	1 cut(s)	312
BsrFI	RCCGGY	1 cut(s)	469
BsrI	ACTGG	1 cut(s)	350
BssAI	RCCGGY	1 cut(s)	469
BssECI	CCNNGG	3 cut(s)	9, 138, 180
BssMI	GATC	1 cut(s)	51
BssNI	GRCGYC	1 cut(s)	97
BssT1I	CCWWGG	2 cut(s)	9, 138
Bst6I	CTCTTC	2 cut(s)	449, 455
BstACI	GRCGYC	1 cut(s)	97
BstC8I	GCNNGC	1 cut(s)	471
BstDSI	CCRYGG	2 cut(s)	138, 180
BstKTI	GATC	1 cut(s)	54
BstMAI	GTCTC	1 cut(s)	440
BstMBI	GATC	1 cut(s)	51
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 230, 239, 389
BstNSI	RCATGY	1 cut(s)	498
BstV2I	GAAGAC	2 cut(s)	272, 483
BtgI	CCRYGG	2 cut(s)	138, 180
BtgZI	GCGATG	1 cut(s)	8
BtsIMutI	CAGTG	1 cut(s)	343
Cac8I	GCNNGC	1 cut(s)	471
Cfr10I	RCCGGY	1 cut(s)	469
Csp6I	GTAC	1 cut(s)	492
CviAII	CATG	3 cut(s)	139, 319, 495
CviJI	RGCY	7 cut(s)	14, 35, 189, 224, 233, 294, 383
CviKI_1	RGCY	7 cut(s)	14, 35, 189, 224, 233, 294, 383
CviQI	GTAC	1 cut(s)	492
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
Eam1104I	CTCTTC	2 cut(s)	449, 455
EarI	CTCTTC	2 cut(s)	449, 455
Ecl136II	GAGCTC	1 cut(s)	35
Eco130I	CCWWGG	2 cut(s)	9, 138
Eco24I	GRGCYC	1 cut(s)	37
Eco53kI	GAGCTC	1 cut(s)	35
EcoICRI	GAGCTC	1 cut(s)	35
EcoT14I	CCWWGG	2 cut(s)	9, 138
EcoT38I	GRGCYC	1 cut(s)	37
ErhI	CCWWGG	2 cut(s)	9, 138
Esp3I	CGTCTC	1 cut(s)	440
FaeI	CATG	3 cut(s)	142, 322, 498
FaiI	YATR	7 cut(s)	46, 114, 140, 320, 333, 380, 496
FatI	CATG	3 cut(s)	138, 318, 494
FblI	GTMKAC	1 cut(s)	355
Fnu4HI	GCNGC	2 cut(s)	28, 310
FriOI	GRGCYC	1 cut(s)	37
Fsp4HI	GCNGC	2 cut(s)	28, 310
FspBI	CTAG	2 cut(s)	395, 499
GluI	GCNGC	2 cut(s)	28, 310
GsuI	CTGGAG	1 cut(s)	367
HapII	CCGG	2 cut(s)	234, 470
Hin1I	GRCGYC	1 cut(s)	97
Hin1II	CATG	3 cut(s)	142, 322, 498
HincII	GTYRAC	2 cut(s)	154, 256
HindII	GTYRAC	2 cut(s)	154, 256
HinfI	GANTC	4 cut(s)	59, 281, 349, 440
HpaI	GTTAAC	1 cut(s)	154
HpaII	CCGG	2 cut(s)	234, 470
HphI	GGTGA	1 cut(s)	363
Hpy166II	GTNNAC	4 cut(s)	154, 256, 356, 367
Hpy188I	TCNGA	4 cut(s)	86, 286, 418, 445
Hpy188III	TCNNGA	2 cut(s)	104, 275
Hpy8I	GTNNAC	4 cut(s)	154, 256, 356, 367
Hpy99I	CGWCG	1 cut(s)	99
HpyAV	CCTTC	2 cut(s)	369, 384
HpyCH4IV	ACGT	2 cut(s)	97, 159
HpyCH4V	TGCA	1 cut(s)	40
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 230, 239, 389
HpySE526I	ACGT	2 cut(s)	97, 159
Hsp92I	GRCGYC	1 cut(s)	97
Hsp92II	CATG	3 cut(s)	142, 322, 498
KroI	GCCGGC	1 cut(s)	469
KroNI	GCCGGC	1 cut(s)	471
KspAI	GTTAAC	1 cut(s)	154
Kzo9I	GATC	1 cut(s)	51
LmnI	GCTCC	1 cut(s)	317
LpnPI	CCDG	3 cut(s)	247, 331, 483
MaeI	CTAG	2 cut(s)	395, 499
MaeII	ACGT	2 cut(s)	97, 159
MalI	GATC	1 cut(s)	53
MbiI	CCGCTC	1 cut(s)	312
MboI	GATC	1 cut(s)	51
MboII	GAAGA	8 cut(s)	230, 277, 290, 443, 463, 466, 472, 488
MfeI	CAATTG	2 cut(s)	147, 259
MhlI	GDGCHC	1 cut(s)	37
MluCI	AATT	3 cut(s)	122, 147, 259
MlyI	GAGTC	1 cut(s)	358
MmeI	TCCRAC	1 cut(s)	339
MnlI	CCTC	7 cut(s)	208, 311, 333, 391, 394, 421, 450
MroNI	GCCGGC	1 cut(s)	469
MseI	TTAA	4 cut(s)	128, 134, 153, 162
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	2 cut(s)	234, 470
MunI	CAATTG	2 cut(s)	147, 259
Mva1269I	GAATGC	1 cut(s)	471
MwoI	GCNNNNNNNGC	4 cut(s)	11, 230, 239, 389
NaeI	GCCGGC	1 cut(s)	471
NcoI	CCATGG	1 cut(s)	138
NdeII	GATC	1 cut(s)	51
NgoMIV	GCCGGC	1 cut(s)	469
NlaIII	CATG	3 cut(s)	142, 322, 498
NmeAIII	GCCGAG	1 cut(s)	56
NspI	RCATGY	1 cut(s)	498
PcsI	WCGNNNNNNNCGW	1 cut(s)	282
PctI	GAATGC	1 cut(s)	471
PdiI	GCCGGC	1 cut(s)	471
PfeI	GAWTC	3 cut(s)	59, 281, 440
PkrI	GCNGC	2 cut(s)	29, 311
PleI	GAGTC	1 cut(s)	357
PpsI	GAGTC	1 cut(s)	357
Psp124BI	GAGCTC	1 cut(s)	37
Psp1406I	AACGTT	1 cut(s)	159
RsaI	GTAC	1 cut(s)	493
RsaNI	GTAC	1 cut(s)	492
SacI	GAGCTC	1 cut(s)	37
SaqAI	TTAA	4 cut(s)	128, 134, 153, 162
SatI	GCNGC	2 cut(s)	28, 310
Sau3AI	GATC	1 cut(s)	51
SchI	GAGTC	1 cut(s)	358
SduI	GDGCHC	1 cut(s)	37
SetI	ASST	5 cut(s)	37, 100, 162, 361, 376
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	3 cut(s)	122, 147, 259
SsiI	CCGC	4 cut(s)	28, 197, 212, 310
SspI	AATATT	1 cut(s)	166
SspMI	CTAG	2 cut(s)	395, 499
SstI	GAGCTC	1 cut(s)	37
StyI	CCWWGG	2 cut(s)	9, 138
TaiI	ACGT	2 cut(s)	100, 162
TaqI	TCGA	2 cut(s)	71, 276
TasI	AATT	3 cut(s)	122, 147, 259
TatI	WGTACW	1 cut(s)	491
TauI	GCSGC	2 cut(s)	30, 312
TfiI	GAWTC	3 cut(s)	59, 281, 440
Tru1I	TTAA	4 cut(s)	128, 134, 153, 162
Tru9I	TTAA	4 cut(s)	128, 134, 153, 162
TscAI	CASTG	1 cut(s)	350
TspDTI	ATGAA	2 cut(s)	335, 402
TspGWI	ACGGA	1 cut(s)	264
TspRI	CASTG	1 cut(s)	350
XceI	RCATGY	1 cut(s)	498
XmiI	GTMKAC	1 cut(s)	355
XspI	CTAG	2 cut(s)	395, 499
ZraI	GACGTC	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.