Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0018353

Physical Location & Seq

Genomic Coordinates Forward (+)

73003170 .. 73006559

Gene Structure 3390 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00135430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGTCCCAAGGTATGGCATCAAACTTGGAATAAGAGTTAAGAATGTGGCGATAAAGGCTCGGCAACGCTGGACATGCATCAGGAGCCTAATCAATCGTAACATCCTTGCAATGAGAAGAATTTGGCCAATCTGTTTGAGAGCGAATAGGGGAGAGTGCCAACAGCCGCAAAAATGGACGGCGGAGGAGGAAGAAGCCTTATTAGCTAGAGTAGCAAAGCACAGAGTGGGCAAGTGGAAGATCATTCTTGAAGATTCCGAGTTTGGCCCTATACTCACTCATTGCTCCAACCACAAACTTAAGTATAAGTGGAGGCGGCTGAGTGTTAGACCTTACGGAAACTCACCGTTTATGGCTGATGAAGCAGCCAAGGAGGCCCGAGATAGTTTCGGACACCGAGGAGGAACAGAGAGTTTCGGAGATGAAGGAGATACGGGGAGTTTCGGAGACAAAGGAGATGCGAGAGAATTTCAAAGTCTGCGAAGACACCGAGTCAATGCTACGGCTAGCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0034641 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098687 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

171

Amino Acids

19.66

Weight (kDa)

10.17

Isoelectric Point (pI)

54.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018353)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g17811
rosa_laevigata	RLG00000017652
rosa_multiflora	Rmu_sc0007406.1_g000005 Rmu_sc0013358.1_g000004
rosa_roxburghii	Rroxscaffold_2G00135430
rosa_rugosa	Rorug02G0151800
rosa_samantha	Rh2AG200200 Rh2BG212900 Rh2CG204900 Rh2DG207800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	14
AciI	CCGC	3 cut(s)	167, 182, 316
AcoI	YGGCCR	1 cut(s)	125
AcsI	RAATTY	2 cut(s)	120, 467
AdeI	CACNNNGTG	1 cut(s)	226
AfiI	CCNNNNNNNGG	1 cut(s)	14
AflII	CTTAAG	1 cut(s)	299
AgsI	TTSAA	2 cut(s)	251, 473
AhdI	GACNNNNNGTC	1 cut(s)	491
AluBI	AGCT	1 cut(s)	206
AluI	AGCT	1 cut(s)	206
Alw26I	GTCTC	1 cut(s)	441
Ama87I	CYCGRG	1 cut(s)	378
AoxI	GGCC	3 cut(s)	125, 265, 375
ApeKI	GCWGC	1 cut(s)	365
ApoI	RAATTY	2 cut(s)	120, 467
AspS9I	GGNCC	3 cut(s)	4, 266, 376
AsuHPI	GGTGA	1 cut(s)	336
AsuNHI	GCTAGC	1 cut(s)	506
AvaI	CYCGRG	1 cut(s)	378
AvaII	GGWCC	1 cut(s)	4
BalI	TGGCCA	1 cut(s)	127
BbsI	GAAGAC	1 cut(s)	490
BbvI	GCAGC	1 cut(s)	377
BceAI	ACGGC	1 cut(s)	195
BcoDI	GTCTC	1 cut(s)	441
BfaI	CTAG	2 cut(s)	207, 507
BfrI	CTTAAG	1 cut(s)	299
BglI	GCCNNNNNGGC	1 cut(s)	374
BisI	GCNGC	3 cut(s)	167, 317, 366
BlsI	GCNGC	3 cut(s)	168, 318, 367
Bme18I	GGWCC	1 cut(s)	4
BmeRI	GACNNNNNGTC	1 cut(s)	491
BmeT110I	CYCGRG	1 cut(s)	378
BmgT120I	GGNCC	3 cut(s)	4, 266, 376
BmiI	GGNNCC	2 cut(s)	6, 86
BmsI	GCATC	3 cut(s)	27, 87, 448
BmtI	GCTAGC	1 cut(s)	510
BpiI	GAAGAC	1 cut(s)	490
BsaJI	CCNNGG	3 cut(s)	8, 369, 397
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse3DI	GCAATG	2 cut(s)	117, 280
BseDI	CCNNGG	3 cut(s)	8, 369, 397
BseGI	GGATG	1 cut(s)	102
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseMI	GCAATG	2 cut(s)	117, 280
BseMII	CTCAG	1 cut(s)	311
BseRI	GAGGAG	2 cut(s)	200, 414
BseXI	GCAGC	1 cut(s)	377
BshFI	GGCC	3 cut(s)	127, 267, 377
BsiHKCI	CYCGRG	1 cut(s)	378
BslI	CCNNNNNNNGG	1 cut(s)	14
BsmAI	GTCTC	1 cut(s)	441
BsnI	GGCC	3 cut(s)	127, 267, 377
BsoBI	CYCGRG	1 cut(s)	378
Bsp143I	GATC	1 cut(s)	240
BspACI	CCGC	3 cut(s)	167, 182, 316
BspANI	GGCC	3 cut(s)	127, 267, 377
BspCNI	CTCAG	1 cut(s)	312
BspLI	GGNNCC	2 cut(s)	6, 86
BspOI	GCTAGC	1 cut(s)	510
BspTI	CTTAAG	1 cut(s)	299
BsrDI	GCAATG	2 cut(s)	117, 280
BssECI	CCNNGG	3 cut(s)	8, 369, 397
BssMI	GATC	1 cut(s)	240
BssT1I	CCWWGG	2 cut(s)	8, 369
Bst4CI	ACNGT	1 cut(s)	348
BstAFI	CTTAAG	1 cut(s)	299
BstC8I	GCNNGC	1 cut(s)	508
BstDEI	CTNAG	1 cut(s)	320
BstF5I	GGATG	1 cut(s)	102
BstKTI	GATC	1 cut(s)	243
BstMAI	GTCTC	1 cut(s)	441
BstMBI	GATC	1 cut(s)	240
BstMWI	GCNNNNNNNGC	7 cut(s)	56, 75, 84, 203, 212, 362, 374
BstNSI	RCATGY	1 cut(s)	78
BstV1I	GCAGC	1 cut(s)	377
BstV2I	GAAGAC	1 cut(s)	490
BsuRI	GGCC	3 cut(s)	127, 267, 377
BtsCI	GGATG	1 cut(s)	102
Cac8I	GCNNGC	1 cut(s)	508
Cfr13I	GGNCC	3 cut(s)	4, 266, 376
CviAII	CATG	1 cut(s)	75
DdeI	CTNAG	1 cut(s)	320
DpnI	GATC	1 cut(s)	242
DpnII	GATC	1 cut(s)	240
DraIII	CACNNNGTG	1 cut(s)	226
DriI	GACNNNNNGTC	1 cut(s)	491
EaeI	YGGCCR	1 cut(s)	125
Eam1105I	GACNNNNNGTC	1 cut(s)	491
EciI	GGCGGA	1 cut(s)	197
Eco130I	CCWWGG	2 cut(s)	8, 369
Eco47I	GGWCC	1 cut(s)	4
Eco88I	CYCGRG	1 cut(s)	378
EcoT14I	CCWWGG	2 cut(s)	8, 369
EcoT22I	ATGCAT	1 cut(s)	80
ErhI	CCWWGG	2 cut(s)	8, 369
FaeI	CATG	1 cut(s)	78
FaiI	YATR	5 cut(s)	15, 76, 272, 306, 353
FatI	CATG	1 cut(s)	74
Fnu4HI	GCNGC	3 cut(s)	167, 317, 366
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	3 cut(s)	167, 317, 366
FspBI	CTAG	2 cut(s)	207, 507
GluI	GCNGC	3 cut(s)	167, 317, 366
HaeIII	GGCC	3 cut(s)	127, 267, 377
Hin1II	CATG	1 cut(s)	78
HinfI	GANTC	2 cut(s)	254, 492
HphI	GGTGA	1 cut(s)	336
Hpy188I	TCNGA	4 cut(s)	259, 392, 419, 446
Hpy188III	TCNNGA	2 cut(s)	82, 248
HpyAV	CCTTC	1 cut(s)	419
HpyCH4III	ACNGT	1 cut(s)	348
HpyCH4V	TGCA	2 cut(s)	78, 110
HpyF10VI	GCNNNNNNNGC	7 cut(s)	56, 75, 84, 203, 212, 362, 374
HpyF3I	CTNAG	1 cut(s)	320
Hsp92II	CATG	1 cut(s)	78
Kzo9I	GATC	1 cut(s)	240
LmnI	GCTCC	2 cut(s)	84, 290
LpnPI	CCDG	2 cut(s)	55, 67
Lsp1109I	GCAGC	1 cut(s)	377
LweI	GCATC	3 cut(s)	27, 87, 448
MaeI	CTAG	2 cut(s)	207, 507
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	1 cut(s)	242
MboI	GATC	1 cut(s)	240
MboII	GAAGA	5 cut(s)	129, 203, 250, 263, 495
MlsI	TGGCCA	1 cut(s)	127
MluCI	AATT	2 cut(s)	120, 467
MluNI	TGGCCA	1 cut(s)	127
MlyI	GAGTC	1 cut(s)	501
MmeI	TCCRAC	1 cut(s)	312
MnlI	CCTC	6 cut(s)	178, 181, 306, 367, 392, 395
Mox20I	TGGCCA	1 cut(s)	127
Mph1103I	ATGCAT	1 cut(s)	80
MscI	TGGCCA	1 cut(s)	127
MseI	TTAA	2 cut(s)	39, 300
Msp20I	TGGCCA	1 cut(s)	127
MspCI	CTTAAG	1 cut(s)	299
MwoI	GCNNNNNNNGC	7 cut(s)	56, 75, 84, 203, 212, 362, 374
NdeII	GATC	1 cut(s)	240
NheI	GCTAGC	1 cut(s)	506
NlaIII	CATG	1 cut(s)	78
NlaIV	GGNNCC	2 cut(s)	6, 86
NmeAIII	GCCGAG	1 cut(s)	40
NsiI	ATGCAT	1 cut(s)	80
NspI	RCATGY	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	254
PflMI	CCANNNNNTGG	1 cut(s)	14
PkrI	GCNGC	3 cut(s)	168, 318, 367
PleI	GAGTC	1 cut(s)	500
PpsI	GAGTC	1 cut(s)	500
PspN4I	GGNNCC	2 cut(s)	6, 86
PspPI	GGNCC	3 cut(s)	4, 266, 376
SaqAI	TTAA	2 cut(s)	39, 300
SatI	GCNGC	3 cut(s)	167, 317, 366
Sau3AI	GATC	1 cut(s)	240
Sau96I	GGNCC	3 cut(s)	4, 266, 376
SchI	GAGTC	1 cut(s)	501
SetI	ASST	3 cut(s)	14, 208, 334
SfaNI	GCATC	3 cut(s)	27, 87, 448
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
Sse9I	AATT	2 cut(s)	120, 467
SsiI	CCGC	3 cut(s)	167, 182, 316
SspMI	CTAG	2 cut(s)	207, 507
StyI	CCWWGG	2 cut(s)	8, 369
TaaI	ACNGT	1 cut(s)	348
TasI	AATT	2 cut(s)	120, 467
TauI	GCSGC	2 cut(s)	169, 319
TfiI	GAWTC	1 cut(s)	254
Tru1I	TTAA	2 cut(s)	39, 300
Tru9I	TTAA	2 cut(s)	39, 300
TseI	GCWGC	1 cut(s)	365
TspDTI	ATGAA	2 cut(s)	375, 438
TspGWI	ACGGA	1 cut(s)	351
Van91I	CCANNNNNTGG	1 cut(s)	14
Vha464I	CTTAAG	1 cut(s)	299
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	2 cut(s)	120, 467
XceI	RCATGY	1 cut(s)	78
XspI	CTAG	2 cut(s)	207, 507
Zsp2I	ATGCAT	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.