Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0024639

Physical Location & Seq

Genomic Coordinates Reverse (-)

74483754 .. 74484215

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00053560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTTCTGTCCTTCTTACAGGAATGCAACAAGAGCTTGCGATGAAGATACTATGGGGTGGGCGTCATCGACATTCCCGACATATGATGTCAGGTCTCGATCAGTGTCAAAATTACCTTCCTCGGGAAAGCACAAGCTTGTCTTCTCTGATCCAGTTAGACCTTCAAAATCCAAGTTCAGAAAAAATGCAGTAGAGCATGGTGAGATGCGTCACTTTCTGGCTGAGCATGTATTCCCACCCTTGCCAATAGCTGCACCGCTGAATCCCAGTCCAAGGTTCGACCTGAACCTACCTGTCAACGAGGATATTGAGACTGGTGATCTGGAAAGCACTTCCCATTCTCAGGTGGTTGAGTCTTCATTTGAAGAAAGCTTTGGAGTTCTCCCACATGAATATGTTCCTGAATTGCTTTCAGGCCTTGATGACTGTTCATTATTGCCAGAATATGATGACATTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0010035 GO:0010038 GO:0016514 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0070013 GO:0070603 GO:0071944 GO:0098542 GO:1902494 GO:1904949

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSA Helicase_C Myb_DNA-bind_6 SNF2_N

Protein Analysis

153

Amino Acids

17.1

Weight (kDa)

4.94

Isoelectric Point (pI)

64.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024639)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g20810
rosa_multiflora	Rmu_co8286905.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	257
AclWI	GGATC	1 cut(s)	143
AcyI	GRCGYC	1 cut(s)	62
AfiI	CCNNNNNNNGG	3 cut(s)	122, 273, 343
AgsI	TTSAA	2 cut(s)	165, 365
AjuI	GAANNNNNNNTTGG	2 cut(s)	357, 389
AluBI	AGCT	4 cut(s)	35, 136, 251, 372
AluI	AGCT	4 cut(s)	35, 136, 251, 372
Alw26I	GTCTC	2 cut(s)	99, 305
AlwI	GGATC	1 cut(s)	143
Ama87I	CYCGRG	1 cut(s)	121
AoxI	GGCC	1 cut(s)	415
ApeKI	GCWGC	1 cut(s)	251
Asp700I	GAANNNNTTC	1 cut(s)	396
AsuHPI	GGTGA	2 cut(s)	212, 329
AvaI	CYCGRG	1 cut(s)	121
BbsI	GAAGAC	2 cut(s)	133, 348
BbvI	GCAGC	1 cut(s)	238
BcoDI	GTCTC	2 cut(s)	99, 305
BisI	GCNGC	1 cut(s)	252
BlpI	GCTNAGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	253
BmeT110I	CYCGRG	1 cut(s)	121
BmrI	ACTGGG	1 cut(s)	261
BmsI	GCATC	1 cut(s)	195
BmuI	ACTGGG	1 cut(s)	261
BpiI	GAAGAC	2 cut(s)	133, 348
Bpu1102I	GCTNAGC	1 cut(s)	222
BsaHI	GRCGYC	1 cut(s)	62
BsaI	GGTCTC	1 cut(s)	99
BsaJI	CCNNGG	2 cut(s)	120, 272
Bsc4I	CCNNNNNNNGG	3 cut(s)	122, 273, 343
Bse1I	ACTGG	3 cut(s)	152, 267, 319
Bse3DI	GCAATG	1 cut(s)	453
BseDI	CCNNGG	2 cut(s)	120, 272
BseLI	CCNNNNNNNGG	3 cut(s)	122, 273, 343
BseMI	GCAATG	1 cut(s)	453
BseMII	CTCAG	2 cut(s)	213, 356
BseNI	ACTGG	3 cut(s)	152, 267, 319
BseXI	GCAGC	1 cut(s)	238
BsgI	GTGCAG	1 cut(s)	237
BshFI	GGCC	1 cut(s)	417
BsiHKCI	CYCGRG	1 cut(s)	121
BslI	CCNNNNNNNGG	3 cut(s)	122, 273, 343
BsmAI	GTCTC	2 cut(s)	99, 305
BsmI	GAATGC	1 cut(s)	28
BsnI	GGCC	1 cut(s)	417
Bso31I	GGTCTC	1 cut(s)	99
BsoBI	CYCGRG	1 cut(s)	121
Bsp143I	GATC	3 cut(s)	98, 148, 319
Bsp1720I	GCTNAGC	1 cut(s)	222
BspACI	CCGC	1 cut(s)	257
BspANI	GGCC	1 cut(s)	417
BspCNI	CTCAG	2 cut(s)	214, 355
BspPI	GGATC	1 cut(s)	143
BspTNI	GGTCTC	1 cut(s)	99
BsrDI	GCAATG	1 cut(s)	453
BsrI	ACTGG	3 cut(s)	152, 267, 319
BssECI	CCNNGG	2 cut(s)	120, 272
BssMI	GATC	3 cut(s)	98, 148, 319
BssNI	GRCGYC	1 cut(s)	62
BssT1I	CCWWGG	1 cut(s)	272
Bst4CI	ACNGT	1 cut(s)	428
BstACI	GRCGYC	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	2 cut(s)	222, 342
BstKTI	GATC	3 cut(s)	101, 151, 322
BstMAI	GTCTC	2 cut(s)	99, 305
BstMBI	GATC	3 cut(s)	98, 148, 319
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstNSI	RCATGY	1 cut(s)	230
BstV1I	GCAGC	1 cut(s)	238
BstV2I	GAAGAC	2 cut(s)	133, 348
BsuRI	GGCC	1 cut(s)	417
BtgZI	GCGATG	1 cut(s)	54
BtsIMutI	CAGTG	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	37
CseI	GACGC	2 cut(s)	51, 197
CviAII	CATG	3 cut(s)	197, 227, 389
CviJI	RGCY	6 cut(s)	35, 136, 221, 251, 372, 417
CviKI_1	RGCY	6 cut(s)	35, 136, 221, 251, 372, 417
DdeI	CTNAG	2 cut(s)	222, 342
DpnI	GATC	3 cut(s)	100, 150, 321
DpnII	GATC	3 cut(s)	98, 148, 319
Eco130I	CCWWGG	1 cut(s)	272
Eco147I	AGGCCT	1 cut(s)	417
Eco31I	GGTCTC	1 cut(s)	99
Eco88I	CYCGRG	1 cut(s)	121
EcoT14I	CCWWGG	1 cut(s)	272
ErhI	CCWWGG	1 cut(s)	272
FaeI	CATG	3 cut(s)	200, 230, 392
FaiI	YATR	8 cut(s)	53, 82, 84, 198, 228, 390, 396, 447
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FatI	CATG	3 cut(s)	196, 226, 388
FauNDI	CATATG	1 cut(s)	82
Fnu4HI	GCNGC	1 cut(s)	252
Fsp4HI	GCNGC	1 cut(s)	252
GluI	GCNGC	1 cut(s)	252
HaeIII	GGCC	1 cut(s)	417
HgaI	GACGC	2 cut(s)	51, 197
Hin1I	GRCGYC	1 cut(s)	62
Hin1II	CATG	3 cut(s)	200, 230, 392
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HindIII	AAGCTT	2 cut(s)	134, 370
HinfI	GANTC	2 cut(s)	262, 353
HphI	GGTGA	2 cut(s)	212, 329
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	2 cut(s)	148, 179
Hpy188III	TCNNGA	5 cut(s)	76, 96, 123, 323, 401
Hpy8I	GTNNAC	1 cut(s)	298
HpyAV	CCTTC	3 cut(s)	21, 126, 171
HpyCH4III	ACNGT	1 cut(s)	428
HpyCH4V	TGCA	3 cut(s)	26, 188, 254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpyF3I	CTNAG	2 cut(s)	222, 342
Hsp92I	GRCGYC	1 cut(s)	62
Hsp92II	CATG	3 cut(s)	200, 230, 392
Kzo9I	GATC	3 cut(s)	98, 148, 319
Lsp1109I	GCAGC	1 cut(s)	238
LweI	GCATC	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	209
MalI	GATC	3 cut(s)	100, 150, 321
MboI	GATC	3 cut(s)	98, 148, 319
MboII	GAAGA	4 cut(s)	56, 133, 348, 377
MluCI	AATT	2 cut(s)	110, 404
MlyI	GAGTC	1 cut(s)	362
MnlI	CCTC	2 cut(s)	130, 295
MroXI	GAANNNNTTC	1 cut(s)	396
MslI	CAYNNNNRTG	1 cut(s)	393
MspA1I	CMGCKG	1 cut(s)	259
Mva1269I	GAATGC	1 cut(s)	28
MwoI	GCNNNNNNNGC	1 cut(s)	32
NdeI	CATATG	1 cut(s)	82
NdeII	GATC	3 cut(s)	98, 148, 319
NlaIII	CATG	3 cut(s)	200, 230, 392
NmuCI	GTSAC	1 cut(s)	209
NspI	RCATGY	1 cut(s)	230
PceI	AGGCCT	1 cut(s)	417
PcsI	WCGNNNNNNNCGW	1 cut(s)	74
PctI	GAATGC	1 cut(s)	28
PdmI	GAANNNNTTC	1 cut(s)	396
PfeI	GAWTC	1 cut(s)	262
PkrI	GCNGC	1 cut(s)	253
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
RseI	CAYNNNNRTG	1 cut(s)	393
SatI	GCNGC	1 cut(s)	252
Sau3AI	GATC	3 cut(s)	98, 148, 319
SchI	GAGTC	1 cut(s)	362
SfaNI	GCATC	1 cut(s)	195
SmiMI	CAYNNNNRTG	1 cut(s)	393
Sse9I	AATT	2 cut(s)	110, 404
SseBI	AGGCCT	1 cut(s)	417
SsiI	CCGC	1 cut(s)	257
StuI	AGGCCT	1 cut(s)	417
StyI	CCWWGG	1 cut(s)	272
TaaI	ACNGT	1 cut(s)	428
TaqI	TCGA	3 cut(s)	68, 97, 279
TasI	AATT	2 cut(s)	110, 404
TfiI	GAWTC	1 cut(s)	262
TscAI	CASTG	1 cut(s)	108
TseFI	GTSAC	1 cut(s)	209
TseI	GCWGC	1 cut(s)	251
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	4 cut(s)	57, 348, 405, 420
TspRI	CASTG	1 cut(s)	108
XceI	RCATGY	1 cut(s)	230
XmnI	GAANNNNTTC	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.