Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8286905.1

Orthogroup ID

OG0024639

Physical Location & Seq

Genomic Coordinates Reverse (-)

197 .. 655

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8286905.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atgttctgtccttgcaggaatgcaacaagagcttgcgatgaagatactatggggtgggcttcatcgacattcccgacatatgatgtcaggtctcgatcagtgtcaaagttaccttcctcaggaaagcacaagcttgtcttctccgatccagttagaccttcaaaatccaagttcagaaaaaatgcagtagagcatggtgagatgcgtcactttctggctgagcatgtattcccacccttgccaatagctgcaccgctgaatcccagtccaaggttcgacctgaacctacctgtcaacgaggatattgagactggtgatctggaaagcacttcccattctcaggtggttgagtcttcatttgaagaaagctttggagttctcccacatgaatatgttcctgaattgctttcaggccttgatgactgttcattattgccagaatatgatgacattgcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0010035 GO:0010038 GO:0016514 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0070013 GO:0070603 GO:0071944 GO:0098542 GO:1902494 GO:1904949

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSA Helicase_C Myb_DNA-bind_6 SNF2_N

Protein Analysis

152

Amino Acids

16.95

Weight (kDa)

4.94

Isoelectric Point (pI)

64.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024639)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g20810
rosa_multiflora	Rmu_co8286905.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	254
AclWI	GGATC	1 cut(s)	140
AfiI	CCNNNNNNNGG	3 cut(s)	119, 270, 340
AgsI	TTSAA	2 cut(s)	162, 362
AjuI	GAANNNNNNNTTGG	2 cut(s)	354, 386
AluBI	AGCT	4 cut(s)	32, 133, 248, 369
AluI	AGCT	4 cut(s)	32, 133, 248, 369
Alw26I	GTCTC	2 cut(s)	96, 302
AlwI	GGATC	1 cut(s)	140
AoxI	GGCC	1 cut(s)	412
ApeKI	GCWGC	1 cut(s)	248
Asp700I	GAANNNNTTC	1 cut(s)	393
AsuHPI	GGTGA	2 cut(s)	209, 326
AxyI	CCTNAGG	1 cut(s)	118
BbsI	GAAGAC	2 cut(s)	130, 345
BbvI	GCAGC	1 cut(s)	235
BcoDI	GTCTC	2 cut(s)	96, 302
BisI	GCNGC	1 cut(s)	249
BlpI	GCTNAGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	250
BmrI	ACTGGG	1 cut(s)	258
BmsI	GCATC	1 cut(s)	192
BmuI	ACTGGG	1 cut(s)	258
BpiI	GAAGAC	2 cut(s)	130, 345
Bpu1102I	GCTNAGC	1 cut(s)	219
BsaI	GGTCTC	1 cut(s)	96
BsaJI	CCNNGG	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	3 cut(s)	119, 270, 340
Bse1I	ACTGG	3 cut(s)	149, 264, 316
Bse21I	CCTNAGG	1 cut(s)	118
Bse3DI	GCAATG	1 cut(s)	450
BseDI	CCNNGG	1 cut(s)	269
BseLI	CCNNNNNNNGG	3 cut(s)	119, 270, 340
BseMI	GCAATG	1 cut(s)	450
BseMII	CTCAG	3 cut(s)	132, 210, 353
BseNI	ACTGG	3 cut(s)	149, 264, 316
BseXI	GCAGC	1 cut(s)	235
BsgI	GTGCAG	1 cut(s)	234
BshFI	GGCC	1 cut(s)	414
BslI	CCNNNNNNNGG	3 cut(s)	119, 270, 340
BsmAI	GTCTC	2 cut(s)	96, 302
BsmI	GAATGC	1 cut(s)	25
BsnI	GGCC	1 cut(s)	414
Bso31I	GGTCTC	1 cut(s)	96
Bsp143I	GATC	3 cut(s)	95, 145, 316
Bsp1720I	GCTNAGC	1 cut(s)	219
BspACI	CCGC	1 cut(s)	254
BspANI	GGCC	1 cut(s)	414
BspCNI	CTCAG	3 cut(s)	131, 211, 352
BspPI	GGATC	1 cut(s)	140
BspTNI	GGTCTC	1 cut(s)	96
BsrDI	GCAATG	1 cut(s)	450
BsrI	ACTGG	3 cut(s)	149, 264, 316
BssECI	CCNNGG	1 cut(s)	269
BssMI	GATC	3 cut(s)	95, 145, 316
BssT1I	CCWWGG	1 cut(s)	269
Bst4CI	ACNGT	1 cut(s)	425
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	3 cut(s)	118, 219, 339
BstENI	CCTNNNNNAGG	1 cut(s)	117
BstKTI	GATC	3 cut(s)	98, 148, 319
BstMAI	GTCTC	2 cut(s)	96, 302
BstMBI	GATC	3 cut(s)	95, 145, 316
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstNSI	RCATGY	1 cut(s)	227
BstV1I	GCAGC	1 cut(s)	235
BstV2I	GAAGAC	2 cut(s)	130, 345
Bsu36I	CCTNAGG	1 cut(s)	118
BsuRI	GGCC	1 cut(s)	414
BtgZI	GCGATG	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	105
Cac8I	GCNNGC	1 cut(s)	34
CseI	GACGC	1 cut(s)	194
CviAII	CATG	3 cut(s)	194, 224, 386
CviJI	RGCY	7 cut(s)	32, 59, 133, 218, 248, 369, 414
CviKI_1	RGCY	7 cut(s)	32, 59, 133, 218, 248, 369, 414
DdeI	CTNAG	3 cut(s)	118, 219, 339
DpnI	GATC	3 cut(s)	97, 147, 318
DpnII	GATC	3 cut(s)	95, 145, 316
Eco130I	CCWWGG	1 cut(s)	269
Eco147I	AGGCCT	1 cut(s)	414
Eco31I	GGTCTC	1 cut(s)	96
Eco81I	CCTNAGG	1 cut(s)	118
EcoNI	CCTNNNNNAGG	1 cut(s)	117
EcoT14I	CCWWGG	1 cut(s)	269
ErhI	CCWWGG	1 cut(s)	269
FaeI	CATG	3 cut(s)	197, 227, 389
FaiI	YATR	8 cut(s)	50, 79, 81, 195, 225, 387, 393, 444
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FatI	CATG	3 cut(s)	193, 223, 385
FauNDI	CATATG	1 cut(s)	79
Fnu4HI	GCNGC	1 cut(s)	249
Fsp4HI	GCNGC	1 cut(s)	249
GluI	GCNGC	1 cut(s)	249
HaeIII	GGCC	1 cut(s)	414
HgaI	GACGC	1 cut(s)	194
Hin1II	CATG	3 cut(s)	197, 227, 389
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HindIII	AAGCTT	2 cut(s)	131, 367
HinfI	GANTC	2 cut(s)	259, 350
HphI	GGTGA	2 cut(s)	209, 326
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	2 cut(s)	145, 176
Hpy188III	TCNNGA	5 cut(s)	73, 93, 120, 320, 398
Hpy8I	GTNNAC	1 cut(s)	295
HpyAV	CCTTC	2 cut(s)	123, 168
HpyCH4III	ACNGT	1 cut(s)	425
HpyCH4V	TGCA	4 cut(s)	15, 23, 185, 251
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HpyF3I	CTNAG	3 cut(s)	118, 219, 339
Hsp92II	CATG	3 cut(s)	197, 227, 389
Kzo9I	GATC	3 cut(s)	95, 145, 316
Lsp1109I	GCAGC	1 cut(s)	235
LweI	GCATC	1 cut(s)	192
MaeIII	GTNAC	2 cut(s)	108, 206
MalI	GATC	3 cut(s)	97, 147, 318
MboI	GATC	3 cut(s)	95, 145, 316
MboII	GAAGA	4 cut(s)	53, 130, 345, 374
MluCI	AATT	1 cut(s)	401
MlyI	GAGTC	1 cut(s)	359
MnlI	CCTC	2 cut(s)	127, 292
MroXI	GAANNNNTTC	1 cut(s)	393
MslI	CAYNNNNRTG	1 cut(s)	390
MspA1I	CMGCKG	1 cut(s)	256
Mva1269I	GAATGC	1 cut(s)	25
MwoI	GCNNNNNNNGC	1 cut(s)	29
NdeI	CATATG	1 cut(s)	79
NdeII	GATC	3 cut(s)	95, 145, 316
NlaIII	CATG	3 cut(s)	197, 227, 389
NmuCI	GTSAC	1 cut(s)	206
NspI	RCATGY	1 cut(s)	227
PceI	AGGCCT	1 cut(s)	414
PcsI	WCGNNNNNNNCGW	1 cut(s)	71
PctI	GAATGC	1 cut(s)	25
PdmI	GAANNNNTTC	1 cut(s)	393
PfeI	GAWTC	1 cut(s)	259
PkrI	GCNGC	1 cut(s)	250
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
RseI	CAYNNNNRTG	1 cut(s)	390
SatI	GCNGC	1 cut(s)	249
Sau3AI	GATC	3 cut(s)	95, 145, 316
SchI	GAGTC	1 cut(s)	359
SfaNI	GCATC	1 cut(s)	192
SmiMI	CAYNNNNRTG	1 cut(s)	390
Sse9I	AATT	1 cut(s)	401
SseBI	AGGCCT	1 cut(s)	414
SsiI	CCGC	1 cut(s)	254
StuI	AGGCCT	1 cut(s)	414
StyI	CCWWGG	1 cut(s)	269
TaaI	ACNGT	1 cut(s)	425
TaqI	TCGA	3 cut(s)	65, 94, 276
TasI	AATT	1 cut(s)	401
TfiI	GAWTC	1 cut(s)	259
TscAI	CASTG	1 cut(s)	105
TseFI	GTSAC	1 cut(s)	206
TseI	GCWGC	1 cut(s)	248
Tsp45I	GTSAC	1 cut(s)	206
TspDTI	ATGAA	5 cut(s)	51, 54, 345, 402, 417
TspRI	CASTG	1 cut(s)	105
XagI	CCTNNNNNAGG	1 cut(s)	117
XceI	RCATGY	1 cut(s)	227
XmnI	GAANNNNTTC	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.