Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0024639

Physical Location & Seq

Genomic Coordinates Reverse (-)

23555478 .. 23556884

Gene Structure 1407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g20810.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGGGCTTGGGAAGACAATCATGACAATTTCTTTGCTTCCACAATATGGGATCCGGAAAGGCTCTGCTAAGAGTAACAGAGCTGTGGAAGGTGACATCCCACAAAGACCGCCGAAAAAATCACCCATCATCCCAAAATGGTTTAATATTTTGGGGGAAACATTTTCCATTCTTCCAACAAATTTCTCAAACTCCCATGAACATACAGAAAGAAGGAAATTGACCAATTTCGGACATGGTACCAAGTTGGTAGCGGCTGCACTGAATGATTCCTGCAGCAGACGGGGTACCAAGTTGATAGCAGCTGCACTTAATGATGCCAACAGCAGGCGGGACAATGACAAAGTCTTTCTTCCAAACCCGGGGAAAGATTCATCAATTGATGCAGAACGGTTGGATATATCTCTGGAATTTCAGAAAGCAAAAGATGACGCAATGGATGAATTGCCGTCTGTTTTAAATCTATCGATATCTGATTCGGACCCTTGTCCGTCTCTAAATAAAGCTACAGAAGATCATCATCTTAGGAAGTCCTGCGATGTAAATTTGGCTGAGAACCGGTTCAGGGACGCAACAAGAACAAGAACTTGCAATGAAGATGCCGTGGGTTGGGCCTCATCGGTATTCCCAACAAATCATATCAGGTCCCGGTCAATGTCAAAGTTACCGACAACTGGAAAGCACAAACTTGTCTTGTCTGATTCAGTTAGACCTTCCAAATCGAAGATCAGAAGAAGTTCAGTAGAGCATTGTGAGATGTGTAACTTCATTTCTGAGCAGGTATTCCTACCTTTTCCAATGGCTGCACCCATGAATCCAAATCCGAGGTTTGATCTGAACACCCCTGTCAATGAGGATGTTGGAATTTATGATCTGGAAAGGAATTCCTATTCTTACATTGACGGGTCTTTGCTGGAAATGGATAACTTTGGAGTTCTACCACATGAATATGTTCCTGGCTTGATTGGAGGCCTTGATGATGAACAATTGCCAGAATATATGGACATTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0010035 GO:0010038 GO:0016514 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0070013 GO:0070603 GO:0071944 GO:0098542 GO:1902494 GO:1904949

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSA Helicase_C Myb_DNA-bind_6 SNF2_N

Protein Analysis

338

Amino Acids

37.51

Weight (kDa)

6.32

Isoelectric Point (pI)

47.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024639)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g20810
rosa_multiflora	Rmu_co8286905.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	769
Acc65I	GGTACC	2 cut(s)	239, 287
AccB1I	GGYRCC	2 cut(s)	239, 287
AccB7I	CCANNNNNTGG	1 cut(s)	47
AccIII	TCCGGA	1 cut(s)	54
AciI	CCGC	3 cut(s)	110, 254, 331
AclWI	GGATC	2 cut(s)	46, 59
AcsI	RAATTY	5 cut(s)	181, 410, 544, 864, 883
AfaI	GTAC	2 cut(s)	241, 289
AfiI	CCNNNNNNNGG	6 cut(s)	47, 327, 362, 565, 609, 674
AgeI	ACCGGT	1 cut(s)	558
AjnI	CCWGG	1 cut(s)	955
AluBI	AGCT	3 cut(s)	83, 305, 506
AluI	AGCT	3 cut(s)	83, 305, 506
Alw26I	GTCTC	1 cut(s)	498
AlwI	GGATC	2 cut(s)	46, 59
Ama87I	CYCGRG	1 cut(s)	361
Aor13HI	TCCGGA	1 cut(s)	54
AoxI	GGCC	2 cut(s)	612, 970
ApeKI	GCWGC	5 cut(s)	257, 276, 302, 305, 803
ApoI	RAATTY	5 cut(s)	181, 410, 544, 864, 883
ArsI	GACNNNNNNTTYG	2 cut(s)	16, 48
AsiGI	ACCGGT	1 cut(s)	558
Asp700I	GAANNNNTTC	3 cut(s)	560, 736, 951
Asp718I	GGTACC	2 cut(s)	239, 287
AspS9I	GGNCC	3 cut(s)	481, 612, 645
AsuC2I	CCSGG	3 cut(s)	362, 363, 649
AsuHPI	GGTGA	2 cut(s)	104, 114
AvaI	CYCGRG	1 cut(s)	361
AvaII	GGWCC	2 cut(s)	481, 645
BamHI	GGATCC	1 cut(s)	51
BanI	GGYRCC	2 cut(s)	239, 287
BbsI	GAAGAC	1 cut(s)	20
BbvI	GCAGC	5 cut(s)	244, 288, 292, 314, 790
BccI	CCATC	1 cut(s)	134
BceAI	ACGGC	2 cut(s)	433, 587
BciT130I	CCWGG	1 cut(s)	957
BcnI	CCSGG	3 cut(s)	362, 363, 649
BcoDI	GTCTC	1 cut(s)	498
BfmI	CTRYAG	2 cut(s)	274, 507
BfuAI	ACCTGC	1 cut(s)	769
BisI	GCNGC	6 cut(s)	255, 258, 277, 303, 306, 804
BlsI	GCNGC	6 cut(s)	256, 259, 278, 304, 307, 805
Bme1390I	CCNGG	4 cut(s)	362, 363, 649, 957
Bme18I	GGWCC	2 cut(s)	481, 645
BmeT110I	CYCGRG	1 cut(s)	361
BmgT120I	GGNCC	3 cut(s)	481, 612, 645
BmiI	GGNNCC	5 cut(s)	53, 241, 289, 483, 647
BmrFI	CCNGG	4 cut(s)	362, 363, 649, 957
BmsI	GCATC	3 cut(s)	307, 373, 589
BoxI	GACNNNNGTC	1 cut(s)	486
BpiI	GAAGAC	1 cut(s)	20
BpuMI	CCSGG	3 cut(s)	362, 363, 649
Bsa29I	ATCGAT	1 cut(s)	467
BsaBI	GATNNNNATC	1 cut(s)	519
BsaJI	CCNNGG	4 cut(s)	361, 362, 603, 824
BsaWI	WCCGGW	2 cut(s)	54, 558
Bsc4I	CCNNNNNNNGG	6 cut(s)	47, 327, 362, 565, 609, 674
Bse118I	RCCGGY	1 cut(s)	558
Bse1I	ACTGG	1 cut(s)	679
Bse3DI	GCAATG	2 cut(s)	441, 598
Bse8I	GATNNNNATC	1 cut(s)	519
BseAI	TCCGGA	1 cut(s)	54
BseBI	CCWGG	1 cut(s)	957
BseCI	ATCGAT	1 cut(s)	467
BseDI	CCNNGG	4 cut(s)	361, 362, 603, 824
BseGI	GGATG	4 cut(s)	96, 129, 445, 862
BseJI	GATNNNNATC	1 cut(s)	519
BseLI	CCNNNNNNNGG	6 cut(s)	47, 327, 362, 565, 609, 674
BseMI	GCAATG	2 cut(s)	441, 598
BseMII	CTCAG	2 cut(s)	543, 765
BseNI	ACTGG	1 cut(s)	679
BseXI	GCAGC	5 cut(s)	244, 288, 292, 314, 790
BsgI	GTGCAG	3 cut(s)	243, 291, 789
BshFI	GGCC	2 cut(s)	614, 972
BshNI	GGYRCC	2 cut(s)	239, 287
BshTI	ACCGGT	1 cut(s)	558
BshVI	ATCGAT	1 cut(s)	467
BsiHKCI	CYCGRG	1 cut(s)	361
BsiSI	CCGG	4 cut(s)	55, 362, 559, 649
BslFI	GGGAC	3 cut(s)	347, 581, 631
BslI	CCNNNNNNNGG	6 cut(s)	47, 327, 362, 565, 609, 674
BsmAI	GTCTC	1 cut(s)	498
BsmBI	CGTCTC	1 cut(s)	498
BsmFI	GGGAC	3 cut(s)	347, 581, 631
BsnI	GGCC	2 cut(s)	614, 972
BsoBI	CYCGRG	1 cut(s)	361
Bsp13I	TCCGGA	1 cut(s)	54
Bsp143I	GATC	5 cut(s)	51, 514, 726, 832, 871
BspACI	CCGC	3 cut(s)	110, 254, 331
BspANI	GGCC	2 cut(s)	614, 972
BspCNI	CTCAG	2 cut(s)	544, 766
BspDI	ATCGAT	1 cut(s)	467
BspEI	TCCGGA	1 cut(s)	54
BspHI	TCATGA	1 cut(s)	21
BspLI	GGNNCC	5 cut(s)	53, 241, 289, 483, 647
BspMAI	CTGCAG	1 cut(s)	278
BspMI	ACCTGC	1 cut(s)	769
BspPI	GGATC	2 cut(s)	46, 59
BspT107I	GGYRCC	2 cut(s)	239, 287
BsrDI	GCAATG	2 cut(s)	441, 598
BsrFI	RCCGGY	1 cut(s)	558
BsrI	ACTGG	1 cut(s)	679
BssAI	RCCGGY	1 cut(s)	558
BssECI	CCNNGG	4 cut(s)	361, 362, 603, 824
BssMI	GATC	5 cut(s)	51, 514, 726, 832, 871
Bst2UI	CCWGG	1 cut(s)	957
Bst4CI	ACNGT	1 cut(s)	393
BstC8I	GCNNGC	1 cut(s)	329
BstDEI	CTNAG	4 cut(s)	69, 524, 552, 774
BstDSI	CCRYGG	1 cut(s)	603
BstF5I	GGATG	4 cut(s)	96, 129, 445, 862
BstKTI	GATC	5 cut(s)	54, 517, 729, 835, 874
BstMAI	GTCTC	1 cut(s)	498
BstMBI	GATC	5 cut(s)	51, 514, 726, 832, 871
BstNI	CCWGG	1 cut(s)	957
BstPAI	GACNNNNGTC	1 cut(s)	486
BstSCI	CCNGG	4 cut(s)	360, 361, 647, 955
BstSFI	CTRYAG	2 cut(s)	274, 507
BstV1I	GCAGC	5 cut(s)	244, 288, 292, 314, 790
BstV2I	GAAGAC	1 cut(s)	20
BstX2I	RGATCY	1 cut(s)	51
BstYI	RGATCY	1 cut(s)	51
Bsu15I	ATCGAT	1 cut(s)	467
BsuRI	GGCC	2 cut(s)	614, 972
BsuTUI	ATCGAT	1 cut(s)	467
BtgI	CCRYGG	1 cut(s)	603
BtgZI	GCGATG	1 cut(s)	552
BtsCI	GGATG	4 cut(s)	96, 129, 445, 862
BtsIMutI	CAGTG	1 cut(s)	260
BveI	ACCTGC	1 cut(s)	769
Cac8I	GCNNGC	1 cut(s)	329
CciI	TCATGA	1 cut(s)	21
Cfr10I	RCCGGY	1 cut(s)	558
Cfr13I	GGNCC	3 cut(s)	481, 612, 645
Cfr9I	CCCGGG	1 cut(s)	361
ClaI	ATCGAT	1 cut(s)	467
CseI	GACGC	2 cut(s)	440, 578
Csp6I	GTAC	2 cut(s)	240, 288
CspAI	ACCGGT	1 cut(s)	558
CviAII	CATG	5 cut(s)	22, 197, 236, 811, 944
CviQI	GTAC	2 cut(s)	240, 288
DdeI	CTNAG	4 cut(s)	69, 524, 552, 774
DpnI	GATC	5 cut(s)	53, 516, 728, 834, 873
DpnII	GATC	5 cut(s)	51, 514, 726, 832, 871
DraI	TTTAAA	1 cut(s)	459
Eco147I	AGGCCT	1 cut(s)	972
Eco32I	GATATC	1 cut(s)	471
Eco47I	GGWCC	2 cut(s)	481, 645
Eco88I	CYCGRG	1 cut(s)	361
EcoO109I	RGGNCCY	1 cut(s)	645
EcoRI	GAATTC	1 cut(s)	883
EcoRII	CCWGG	1 cut(s)	955
EcoRV	GATATC	1 cut(s)	471
Esp3I	CGTCTC	1 cut(s)	498
FaeI	CATG	5 cut(s)	25, 200, 239, 814, 947
FalI	AAGNNNNNCTT	2 cut(s)	336, 368
FaqI	GGGAC	3 cut(s)	347, 581, 631
FatI	CATG	5 cut(s)	21, 196, 235, 810, 943
FauI	CCCGC	1 cut(s)	324
Fnu4HI	GCNGC	6 cut(s)	255, 258, 277, 303, 306, 804
FokI	GGATG	4 cut(s)	83, 116, 452, 869
Fsp4HI	GCNGC	6 cut(s)	255, 258, 277, 303, 306, 804
GluI	GCNGC	6 cut(s)	255, 258, 277, 303, 306, 804
HaeIII	GGCC	2 cut(s)	614, 972
HapII	CCGG	4 cut(s)	55, 362, 559, 649
HgaI	GACGC	2 cut(s)	440, 578
Hin1II	CATG	5 cut(s)	25, 200, 239, 814, 947
HinfI	GANTC	5 cut(s)	269, 371, 476, 701, 814
HpaII	CCGG	4 cut(s)	55, 362, 559, 649
HphI	GGTGA	2 cut(s)	104, 114
Hpy188I	TCNGA	9 cut(s)	233, 417, 475, 481, 700, 731, 775, 825, 837
Hpy188III	TCNNGA	4 cut(s)	22, 55, 407, 875
HpyAV	CCTTC	3 cut(s)	83, 207, 723
HpyCH4III	ACNGT	1 cut(s)	393
HpyCH4V	TGCA	6 cut(s)	260, 276, 308, 386, 591, 806
HpyF3I	CTNAG	4 cut(s)	69, 524, 552, 774
Hsp92II	CATG	5 cut(s)	25, 200, 239, 814, 947
Kpn2I	TCCGGA	1 cut(s)	54
KpnI	GGTACC	2 cut(s)	243, 291
Kzo9I	GATC	5 cut(s)	51, 514, 726, 832, 871
Lsp1109I	GCAGC	5 cut(s)	244, 288, 292, 314, 790
LweI	GCATC	3 cut(s)	307, 373, 589
MaeIII	GTNAC	4 cut(s)	74, 92, 663, 761
MalI	GATC	5 cut(s)	53, 516, 728, 834, 873
MboI	GATC	5 cut(s)	51, 514, 726, 832, 871
MboII	GAAGA	7 cut(s)	25, 164, 344, 524, 608, 736, 744
MfeI	CAATTG	2 cut(s)	378, 986
MflI	RGATCY	1 cut(s)	51
MmeI	TCCRAC	3 cut(s)	200, 375, 841
MnlI	CCTC	4 cut(s)	625, 819, 847, 962
MroI	TCCGGA	1 cut(s)	54
MroXI	GAANNNNTTC	3 cut(s)	560, 736, 951
MseI	TTAA	3 cut(s)	144, 312, 458
MslI	CAYNNNNRTG	1 cut(s)	948
MspA1I	CMGCKG	1 cut(s)	305
MspI	CCGG	4 cut(s)	55, 362, 559, 649
MspR9I	CCNGG	4 cut(s)	362, 363, 649, 957
MunI	CAATTG	2 cut(s)	378, 986
MvaI	CCWGG	1 cut(s)	957
NciI	CCSGG	3 cut(s)	362, 363, 649
NdeII	GATC	5 cut(s)	51, 514, 726, 832, 871
NlaIII	CATG	5 cut(s)	25, 200, 239, 814, 947
NlaIV	GGNNCC	5 cut(s)	53, 241, 289, 483, 647
NmuCI	GTSAC	1 cut(s)	92
PagI	TCATGA	1 cut(s)	21
PceI	AGGCCT	1 cut(s)	972
PdmI	GAANNNNTTC	3 cut(s)	560, 736, 951
PfeI	GAWTC	5 cut(s)	269, 371, 476, 701, 814
PflFI	GACNNNGTC	1 cut(s)	344
PflMI	CCANNNNNTGG	1 cut(s)	47
PinAI	ACCGGT	1 cut(s)	558
PkrI	GCNGC	6 cut(s)	256, 259, 278, 304, 307, 805
PpuMI	RGGWCCY	1 cut(s)	645
PshAI	GACNNNNGTC	1 cut(s)	486
Psp5II	RGGWCCY	1 cut(s)	645
Psp6I	CCWGG	1 cut(s)	955
PspGI	CCWGG	1 cut(s)	955
PspN4I	GGNNCC	5 cut(s)	53, 241, 289, 483, 647
PspPI	GGNCC	3 cut(s)	481, 612, 645
PspPPI	RGGWCCY	1 cut(s)	645
PstI	CTGCAG	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	51
PsyI	GACNNNGTC	1 cut(s)	344
PvuII	CAGCTG	1 cut(s)	305
RsaI	GTAC	2 cut(s)	241, 289
RsaNI	GTAC	2 cut(s)	240, 288
RseI	CAYNNNNRTG	1 cut(s)	948
SaqAI	TTAA	3 cut(s)	144, 312, 458
SatI	GCNGC	6 cut(s)	255, 258, 277, 303, 306, 804
Sau3AI	GATC	5 cut(s)	51, 514, 726, 832, 871
Sau96I	GGNCC	3 cut(s)	481, 612, 645
ScrFI	CCNGG	4 cut(s)	362, 363, 649, 957
SetI	ASST	9 cut(s)	85, 94, 307, 508, 647, 715, 783, 793, 830
SfaNI	GCATC	3 cut(s)	307, 373, 589
SfcI	CTRYAG	2 cut(s)	274, 507
SinI	GGWCC	2 cut(s)	481, 645
SmaI	CCCGGG	1 cut(s)	363
SmiMI	CAYNNNNRTG	1 cut(s)	948
SseBI	AGGCCT	1 cut(s)	972
SsiI	CCGC	3 cut(s)	110, 254, 331
SspI	AATATT	1 cut(s)	148
StuI	AGGCCT	1 cut(s)	972
StyD4I	CCNGG	4 cut(s)	360, 361, 647, 955
TaaI	ACNGT	1 cut(s)	393
TaqI	TCGA	2 cut(s)	467, 722
TauI	GCSGC	1 cut(s)	257
TfiI	GAWTC	5 cut(s)	269, 371, 476, 701, 814
Tru1I	TTAA	3 cut(s)	144, 312, 458
Tru9I	TTAA	3 cut(s)	144, 312, 458
TscAI	CASTG	1 cut(s)	267
TseFI	GTSAC	1 cut(s)	92
TseI	GCWGC	5 cut(s)	257, 276, 302, 305, 803
Tsp45I	GTSAC	1 cut(s)	92
TspDTI	ATGAA	8 cut(s)	213, 363, 456, 609, 757, 827, 960, 996
TspGWI	ACGGA	1 cut(s)	480
TspMI	CCCGGG	1 cut(s)	361
TspRI	CASTG	1 cut(s)	267
Tth111I	GACNNNGTC	1 cut(s)	344
Van91I	CCANNNNNTGG	1 cut(s)	47
VpaK11BI	GGWCC	2 cut(s)	481, 645
XapI	RAATTY	5 cut(s)	181, 410, 544, 864, 883
XmaI	CCCGGG	1 cut(s)	361
XmnI	GAANNNNTTC	3 cut(s)	560, 736, 951

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.