Rh7DG391400
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0031989
Physical Location & Seq
Forward (+)
53586325 .. 53586810
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG391400.1

Sequence Viewer

Length: 486 bp
ATGGGAAAGGTAGTTGAGGGGCCGAAATATGACAAAAGTGGTGGAACTCGAGCCAATAAAAAAAAGAAAAGGAAGAGGGAAAAGGAGGGGGATGTCATGTTAAAAGAGAGTATGATTAATAAAAATGAGCTCAAAAATGATGGGGAGAAATCTGATAGGAAAACCTTGGAGGAAGTTGACTCTACAGCTAATGTAAAGAAGAGAAAGAAAATCCTCAAGGATGGCAAAATGGGTGTGGCAACTGAATATGGAGACGTTGCACAAATGAACAGGGGAGGAGATAAAAACCAAAAAGAGAAGAGGGACAAAGCAGGTGGTGAATTGGTGCAGAATATCACAAGTGATGGAACGGAGACCGGAGTAGCAAGTCACCGTTTAGATGGGCATATCGTGGAGAAGGGTGGTTTTGCACTTAGAGGGGAGGAAGAAAGAGAAAAGAAATGGTGGAAAGAATGCAGGAATGTAATTGCCAGAATTCGTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

161

Amino Acids

18.12

Weight (kDa)

9.71

Isoelectric Point (pI)

36.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031989)

Species Orthologous Gene IDs
rosa_roxburghii Rroxscaffold_3G00232010
rosa_samantha Rh7DG391400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 302
Acc36I ACCTGC 1 cut(s) 302
AcsI RAATTY 1 cut(s) 474
AluBI AGCT 2 cut(s) 130, 188
AluI AGCT 2 cut(s) 130, 188
Alw21I GWGCWC 1 cut(s) 132
Alw26I GTCTC 2 cut(s) 246, 347
Ama87I CYCGRG 1 cut(s) 48
AoxI GGCC 1 cut(s) 20
ApoI RAATTY 1 cut(s) 474
AseI ATTAAT 1 cut(s) 117
AspS9I GGNCC 1 cut(s) 20
AsuHPI GGTGA 2 cut(s) 329, 362
AvaI CYCGRG 1 cut(s) 48
BanII GRGCYC 1 cut(s) 132
Bbv12I GWGCWC 1 cut(s) 132
BccI CCATC 4 cut(s) 134, 215, 338, 374
BcoDI GTCTC 2 cut(s) 246, 347
BfmI CTRYAG 1 cut(s) 183
BfuAI ACCTGC 1 cut(s) 302
BmeT110I CYCGRG 1 cut(s) 48
BmgT120I GGNCC 1 cut(s) 20
BmiI GGNNCC 1 cut(s) 21
BpuEI CTTGAG 1 cut(s) 200
BsaI GGTCTC 1 cut(s) 347
BsaJI CCNNGG 1 cut(s) 165
BsaWI WCCGGW 1 cut(s) 356
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 2 cut(s) 97, 226
BseRI GAGGAG 1 cut(s) 291
BsgI GTGCAG 1 cut(s) 347
BshFI GGCC 1 cut(s) 22
BsiHKAI GWGCWC 1 cut(s) 132
BsiHKCI CYCGRG 1 cut(s) 48
BsiSI CCGG 1 cut(s) 357
BslFI GGGAC 1 cut(s) 317
BsmAI GTCTC 2 cut(s) 246, 347
BsmBI CGTCTC 1 cut(s) 246
BsmFI GGGAC 1 cut(s) 317
BsmI GAATGC 1 cut(s) 458
BsnI GGCC 1 cut(s) 22
Bso31I GGTCTC 1 cut(s) 347
BsoBI CYCGRG 1 cut(s) 48
Bsp1286I GDGCHC 1 cut(s) 132
BspANI GGCC 1 cut(s) 22
BspLI GGNNCC 1 cut(s) 21
BspMI ACCTGC 1 cut(s) 302
BspTNI GGTCTC 1 cut(s) 347
BssECI CCNNGG 1 cut(s) 165
BssT1I CCWWGG 1 cut(s) 165
Bst4CI ACNGT 1 cut(s) 374
Bst6I CTCTTC 3 cut(s) 68, 194, 293
BstDEI CTNAG 1 cut(s) 413
BstF5I GGATG 2 cut(s) 97, 226
BstMAI GTCTC 2 cut(s) 246, 347
BstSFI CTRYAG 1 cut(s) 183
BsuRI GGCC 1 cut(s) 22
BtsCI GGATG 2 cut(s) 97, 226
BveI ACCTGC 1 cut(s) 302
Cfr13I GGNCC 1 cut(s) 20
CspCI CAANNNNNGTGG 4 cut(s) 22, 57, 295, 330
CviAII CATG 1 cut(s) 97
CviJI RGCY 5 cut(s) 22, 53, 130, 188, 483
CviKI_1 RGCY 5 cut(s) 22, 53, 130, 188, 483
DdeI CTNAG 1 cut(s) 413
Eam1104I CTCTTC 3 cut(s) 68, 194, 293
EarI CTCTTC 3 cut(s) 68, 194, 293
Ecl136II GAGCTC 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 132
Eco31I GGTCTC 1 cut(s) 347
Eco53kI GAGCTC 1 cut(s) 130
Eco88I CYCGRG 1 cut(s) 48
EcoICRI GAGCTC 1 cut(s) 130
EcoRI GAATTC 1 cut(s) 474
EcoT14I CCWWGG 1 cut(s) 165
EcoT38I GRGCYC 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 165
Esp3I CGTCTC 1 cut(s) 246
FaeI CATG 1 cut(s) 100
FaiI YATR 5 cut(s) 30, 98, 113, 249, 387
FaqI GGGAC 1 cut(s) 317
FatI CATG 1 cut(s) 96
FokI GGATG 2 cut(s) 104, 233
FriOI GRGCYC 1 cut(s) 132
HaeIII GGCC 1 cut(s) 22
HapII CCGG 1 cut(s) 357
Hin1II CATG 1 cut(s) 100
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HinfI GANTC 1 cut(s) 179
HpaII CCGG 1 cut(s) 357
HphI GGTGA 2 cut(s) 329, 362
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 1 cut(s) 154
Hpy8I GTNNAC 1 cut(s) 178
HpyAV CCTTC 1 cut(s) 391
HpyCH4III ACNGT 1 cut(s) 374
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 4 cut(s) 260, 328, 410, 456
HpyF3I CTNAG 1 cut(s) 413
HpySE526I ACGT 1 cut(s) 255
Hsp92II CATG 1 cut(s) 100
LpnPI CCDG 4 cut(s) 256, 297, 370, 442
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 1 cut(s) 368
MboII GAAGA 4 cut(s) 85, 211, 310, 437
MhlI GDGCHC 1 cut(s) 132
MluCI AATT 3 cut(s) 320, 465, 474
MlyI GAGTC 1 cut(s) 173
MnlI CCTC 9 cut(s) 10, 69, 79, 163, 224, 269, 294, 410, 415
MseI TTAA 2 cut(s) 101, 117
MspI CCGG 1 cut(s) 357
Mva1269I GAATGC 1 cut(s) 458
NlaIII CATG 1 cut(s) 100
NlaIV GGNNCC 1 cut(s) 21
NmuCI GTSAC 1 cut(s) 368
PaeR7I CTCGAG 1 cut(s) 48
PaqCI CACCTGC 1 cut(s) 302
PctI GAATGC 1 cut(s) 458
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
PshBI ATTAAT 1 cut(s) 117
Psp124BI GAGCTC 1 cut(s) 132
PspN4I GGNNCC 1 cut(s) 21
PspPI GGNCC 1 cut(s) 20
PspXI VCTCGAGB 1 cut(s) 48
SacI GAGCTC 1 cut(s) 132
SaqAI TTAA 2 cut(s) 101, 117
Sau96I GGNCC 1 cut(s) 20
SchI GAGTC 1 cut(s) 173
SduI GDGCHC 1 cut(s) 132
SetI ASST 6 cut(s) 12, 132, 167, 190, 258, 316
SfcI CTRYAG 1 cut(s) 183
Sfr274I CTCGAG 1 cut(s) 48
SlaI CTCGAG 1 cut(s) 48
SmlI CTYRAG 2 cut(s) 48, 215
SmoI CTYRAG 2 cut(s) 48, 215
Sse9I AATT 3 cut(s) 320, 465, 474
SstI GAGCTC 1 cut(s) 132
StyI CCWWGG 1 cut(s) 165
TaaI ACNGT 1 cut(s) 374
TaiI ACGT 1 cut(s) 258
TaqI TCGA 1 cut(s) 49
TasI AATT 3 cut(s) 320, 465, 474
Tru1I TTAA 2 cut(s) 101, 117
Tru9I TTAA 2 cut(s) 101, 117
TseFI GTSAC 1 cut(s) 368
Tsp45I GTSAC 1 cut(s) 368
TspDTI ATGAA 1 cut(s) 281
TspGWI ACGGA 1 cut(s) 365
VspI ATTAAT 1 cut(s) 117
XapI RAATTY 1 cut(s) 474
XhoI CTCGAG 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.