Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0026628

Physical Location & Seq

Genomic Coordinates Reverse (-)

41270423 .. 41283507

Gene Structure 13085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG214500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGTTTCATGGAACCACAGTTGGAGGGTGGAAAGCAATGGATCCGTGTTTCTTCGCAATGAACCCGTTTCCATCATATGAAATCACATTCTTAAATAAGTTGGCTCCGGAAAAAACATGCAATGCTACTTCTGGAAAGACTAGATTTGAGACGCATGACAGAGTTATCTCAGCTATGTCCTATGACCCAAGAGTATTCACATGTTGCTTACAGAAAGACATCCACAAAATTTCCACTTTTATTAGATTGAAAAAATTGGTCAAAGGTAGAAAAGAAAGATTTTCAAAAGGGAATGAGACAGCAATTTCAGGAAATGGTGGTTCAATCTACCTACATGAATCAAGTTGTTTTCTGTATTGGCCATTTGACATGAGAAAATGGGATAAGGATAGCTTCAAATCTTGGGTGGTGGCATCGTCTGAGGTGGCCGGAGAAGAGAGCTCTGACTGGGTCATGTTGCGTGGCTGGCTGGCTGCTGGAGGTTTTCTCGCTTCAATTCTCTCTCTTAAGGGAAAATCAGAGGAAGTGGTGGCCAGAGACTTAGACACCATGGAGAGGCACGCCAAACACGATTGGTACGACTGTCTAGGGTGGCAGGACGGAGACGAACCCGTCAGGTCGGGCTGGAAATCCGAGTCGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009791 GO:0009908 GO:0009987 GO:0010143 GO:0016020 GO:0016311 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016791 GO:0022414 GO:0032501 GO:0032502 GO:0042578 GO:0043170 GO:0044237 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090447 GO:0090567 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransferase HAD

Protein Analysis

214

Amino Acids

24.35

Weight (kDa)

7.62

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0026628)

Species	Orthologous Gene IDs
rosa_samantha	Rh4CG053600 Rh4CG053900 Rh4DG214500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	611
AccIII	TCCGGA	1 cut(s)	106
AclWI	GGATC	2 cut(s)	35, 48
AcoI	YGGCCR	3 cut(s)	359, 426, 531
AcsI	RAATTY	1 cut(s)	228
AfaI	GTAC	1 cut(s)	578
AfiI	CCNNNNNNNGG	1 cut(s)	555
AflII	CTTAAG	1 cut(s)	506
AflIII	ACRYGT	1 cut(s)	200
AgsI	TTSAA	5 cut(s)	250, 285, 324, 397, 495
AluBI	AGCT	3 cut(s)	173, 393, 441
AluI	AGCT	3 cut(s)	173, 393, 441
Alw21I	GWGCWC	1 cut(s)	443
Alw26I	GTCTC	4 cut(s)	143, 290, 531, 597
AlwI	GGATC	2 cut(s)	35, 48
Aor13HI	TCCGGA	1 cut(s)	106
AoxI	GGCC	3 cut(s)	359, 426, 531
ApeKI	GCWGC	1 cut(s)	473
ApoI	RAATTY	1 cut(s)	228
BaeI	ACNNNNGTAYC	2 cut(s)	568, 601
BalI	TGGCCA	2 cut(s)	361, 533
BamHI	GGATCC	1 cut(s)	40
BanII	GRGCYC	1 cut(s)	443
Bbv12I	GWGCWC	1 cut(s)	443
BbvI	GCAGC	1 cut(s)	460
BccI	CCATC	1 cut(s)	79
BcoDI	GTCTC	4 cut(s)	143, 290, 531, 597
BfaI	CTAG	2 cut(s)	141, 587
BfrI	CTTAAG	1 cut(s)	506
BisI	GCNGC	1 cut(s)	474
BlsI	GCNGC	1 cut(s)	475
BmiI	GGNNCC	3 cut(s)	13, 42, 105
BmrI	ACTGGG	1 cut(s)	457
BmsI	GCATC	1 cut(s)	422
BmuI	ACTGGG	1 cut(s)	457
BplI	GAGNNNNNCTC	2 cut(s)	471, 503
BpmI	CTGGAG	1 cut(s)	498
BsaJI	CCNNGG	1 cut(s)	549
BsaWI	WCCGGW	1 cut(s)	106
Bsc4I	CCNNNNNNNGG	1 cut(s)	555
Bse1I	ACTGG	1 cut(s)	452
Bse3DI	GCAATG	3 cut(s)	42, 63, 127
BseAI	TCCGGA	1 cut(s)	106
BseDI	CCNNGG	1 cut(s)	549
BseGI	GGATG	1 cut(s)	219
BseLI	CCNNNNNNNGG	1 cut(s)	555
BseMI	GCAATG	3 cut(s)	42, 63, 127
BseMII	CTCAG	2 cut(s)	183, 411
BseNI	ACTGG	1 cut(s)	452
BseXI	GCAGC	1 cut(s)	460
BshFI	GGCC	3 cut(s)	361, 428, 533
BsiHKAI	GWGCWC	1 cut(s)	443
BsiSI	CCGG	2 cut(s)	107, 429
BslI	CCNNNNNNNGG	1 cut(s)	555
BsmAI	GTCTC	4 cut(s)	143, 290, 531, 597
BsmBI	CGTCTC	2 cut(s)	143, 597
BsnI	GGCC	3 cut(s)	361, 428, 533
Bsp1286I	GDGCHC	1 cut(s)	443
Bsp13I	TCCGGA	1 cut(s)	106
Bsp143I	GATC	1 cut(s)	40
Bsp19I	CCATGG	1 cut(s)	549
BspANI	GGCC	3 cut(s)	361, 428, 533
BspCNI	CTCAG	2 cut(s)	182, 412
BspEI	TCCGGA	1 cut(s)	106
BspLI	GGNNCC	3 cut(s)	13, 42, 105
BspPI	GGATC	2 cut(s)	35, 48
BspTI	CTTAAG	1 cut(s)	506
BsrDI	GCAATG	3 cut(s)	42, 63, 127
BsrI	ACTGG	1 cut(s)	452
BssECI	CCNNGG	1 cut(s)	549
BssMI	GATC	1 cut(s)	40
BssT1I	CCWWGG	1 cut(s)	549
Bst4CI	ACNGT	2 cut(s)	19, 584
Bst6I	CTCTTC	1 cut(s)	429
BstAFI	CTTAAG	1 cut(s)	506
BstC8I	GCNNGC	3 cut(s)	467, 471, 561
BstDEI	CTNAG	3 cut(s)	169, 420, 541
BstDSI	CCRYGG	1 cut(s)	549
BstF5I	GGATG	1 cut(s)	219
BstKTI	GATC	1 cut(s)	43
BstMAI	GTCTC	4 cut(s)	143, 290, 531, 597
BstMBI	GATC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	1 cut(s)	466
BstNSI	RCATGY	2 cut(s)	120, 204
BstV1I	GCAGC	1 cut(s)	460
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
BsuRI	GGCC	3 cut(s)	361, 428, 533
BtgI	CCRYGG	1 cut(s)	549
BtsCI	GGATG	1 cut(s)	219
Cac8I	GCNNGC	3 cut(s)	467, 471, 561
CseI	GACGC	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	577
CviAII	CATG	8 cut(s)	8, 117, 155, 201, 335, 370, 454, 550
CviQI	GTAC	1 cut(s)	577
DdeI	CTNAG	3 cut(s)	169, 420, 541
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
DrdI	GACNNNNNNGTC	1 cut(s)	611
DseDI	GACNNNNNNGTC	1 cut(s)	611
EaeI	YGGCCR	3 cut(s)	359, 426, 531
Eam1104I	CTCTTC	1 cut(s)	429
EarI	CTCTTC	1 cut(s)	429
Ecl136II	GAGCTC	1 cut(s)	441
Eco130I	CCWWGG	1 cut(s)	549
Eco24I	GRGCYC	1 cut(s)	443
Eco53kI	GAGCTC	1 cut(s)	441
EcoICRI	GAGCTC	1 cut(s)	441
EcoT14I	CCWWGG	1 cut(s)	549
EcoT38I	GRGCYC	1 cut(s)	443
ErhI	CCWWGG	1 cut(s)	549
Esp3I	CGTCTC	2 cut(s)	143, 597
FaeI	CATG	8 cut(s)	11, 120, 158, 204, 338, 373, 457, 553
FalI	AAGNNNNNCTT	2 cut(s)	377, 409
FatI	CATG	8 cut(s)	7, 116, 154, 200, 334, 369, 453, 549
FauNDI	CATATG	1 cut(s)	76
Fnu4HI	GCNGC	1 cut(s)	474
FokI	GGATG	1 cut(s)	206
FriOI	GRGCYC	1 cut(s)	443
Fsp4HI	GCNGC	1 cut(s)	474
FspBI	CTAG	2 cut(s)	141, 587
GluI	GCNGC	1 cut(s)	474
GsuI	CTGGAG	1 cut(s)	498
HaeIII	GGCC	3 cut(s)	361, 428, 533
HapII	CCGG	2 cut(s)	107, 429
HgaI	GACGC	1 cut(s)	160
Hin1II	CATG	8 cut(s)	11, 120, 158, 204, 338, 373, 457, 553
HinfI	GANTC	2 cut(s)	338, 635
HpaII	CCGG	2 cut(s)	107, 429
Hpy188I	TCNGA	4 cut(s)	421, 445, 520, 634
Hpy188III	TCNNGA	3 cut(s)	107, 132, 309
HpyCH4III	ACNGT	2 cut(s)	19, 584
HpyCH4V	TGCA	1 cut(s)	120
HpyF10VI	GCNNNNNNNGC	1 cut(s)	466
HpyF3I	CTNAG	3 cut(s)	169, 420, 541
Hsp92II	CATG	8 cut(s)	11, 120, 158, 204, 338, 373, 457, 553
Kpn2I	TCCGGA	1 cut(s)	106
Kzo9I	GATC	1 cut(s)	40
LmnI	GCTCC	1 cut(s)	109
Lsp1109I	GCAGC	1 cut(s)	460
LweI	GCATC	1 cut(s)	422
MaeI	CTAG	2 cut(s)	141, 587
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MboII	GAAGA	2 cut(s)	43, 446
MflI	RGATCY	1 cut(s)	40
MhlI	GDGCHC	1 cut(s)	443
MlsI	TGGCCA	2 cut(s)	361, 533
MluCI	AATT	4 cut(s)	228, 254, 303, 495
MluNI	TGGCCA	2 cut(s)	361, 533
MlyI	GAGTC	1 cut(s)	644
MnlI	CCTC	5 cut(s)	17, 415, 473, 514, 549
Mox20I	TGGCCA	2 cut(s)	361, 533
MroI	TCCGGA	1 cut(s)	106
MscI	TGGCCA	2 cut(s)	361, 533
MseI	TTAA	2 cut(s)	92, 507
Msp20I	TGGCCA	2 cut(s)	361, 533
MspCI	CTTAAG	1 cut(s)	506
MspI	CCGG	2 cut(s)	107, 429
MwoI	GCNNNNNNNGC	1 cut(s)	466
NcoI	CCATGG	1 cut(s)	549
NdeI	CATATG	1 cut(s)	76
NdeII	GATC	1 cut(s)	40
NlaIII	CATG	8 cut(s)	11, 120, 158, 204, 338, 373, 457, 553
NlaIV	GGNNCC	3 cut(s)	13, 42, 105
NspI	RCATGY	2 cut(s)	120, 204
PciI	ACATGT	1 cut(s)	200
PcsI	WCGNNNNNNNCGW	2 cut(s)	567, 576
PfeI	GAWTC	1 cut(s)	338
PflFI	GACNNNGTC	1 cut(s)	449
PkrI	GCNGC	1 cut(s)	475
PleI	GAGTC	1 cut(s)	643
PpsI	GAGTC	1 cut(s)	643
PscI	ACATGT	1 cut(s)	200
Psp124BI	GAGCTC	1 cut(s)	443
PspN4I	GGNNCC	3 cut(s)	13, 42, 105
PsuI	RGATCY	1 cut(s)	40
PsyI	GACNNNGTC	1 cut(s)	449
RsaI	GTAC	1 cut(s)	578
RsaNI	GTAC	1 cut(s)	577
SacI	GAGCTC	1 cut(s)	443
SaqAI	TTAA	2 cut(s)	92, 507
SatI	GCNGC	1 cut(s)	474
Sau3AI	GATC	1 cut(s)	40
SchI	GAGTC	1 cut(s)	644
SduI	GDGCHC	1 cut(s)	443
SetI	ASST	8 cut(s)	175, 268, 333, 395, 426, 443, 484, 620
SfaNI	GCATC	1 cut(s)	422
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
Sse9I	AATT	4 cut(s)	228, 254, 303, 495
SspMI	CTAG	2 cut(s)	141, 587
SstI	GAGCTC	1 cut(s)	443
StyI	CCWWGG	1 cut(s)	549
TaaI	ACNGT	2 cut(s)	19, 584
TasI	AATT	4 cut(s)	228, 254, 303, 495
TfiI	GAWTC	1 cut(s)	338
Tru1I	TTAA	2 cut(s)	92, 507
Tru9I	TTAA	2 cut(s)	92, 507
TseI	GCWGC	1 cut(s)	473
TspDTI	ATGAA	3 cut(s)	74, 93, 351
TspGWI	ACGGA	2 cut(s)	33, 615
Tth111I	GACNNNGTC	1 cut(s)	449
Vha464I	CTTAAG	1 cut(s)	506
XapI	RAATTY	1 cut(s)	228
XceI	RCATGY	2 cut(s)	120, 204
XspI	CTAG	2 cut(s)	141, 587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.