Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0026628

Physical Location & Seq

Genomic Coordinates Forward (+)

10645982 .. 10672115

Gene Structure 26134 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG053600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGACTCATGACAGAGTTATCTCAGCTATGTCGTATGGCCTAAGAGAATTCACATGTTGCTTACAGAAAGACATCCACAAAATTTCTACTTTCATTAGATCGAAAACATTGGTCAAAGGTAGAAAAGAAAGATTTTCAAAAGGGAATAAGACAGCAATTTCAGGAAATAGTGGTTCAATCTACCTAGATGAATCAAGTTATTCCAAAACACCTCATGGAGATTCAAATGACATTGATAACATTTTGGCTTCAATTAAGGATCTTGAAATTACCTCATATAGCATTAGACGGTTCATGCCTAAGGTTAACCGAGAGAAGTTGGCTTCCATGTGTTTATGGACCCTCTGGTGGAGAATGCGAAGCAAGGCTTGGCTGCTCAATAACCGCTCTCACGTACTCGAGCTCTCGACTCATGGAGTTCCTTTCACCATTCAAGCAGTGGCAGAACAGGATCTGAAAATGGGGTGGGCTAATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022402 GO:0022607 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0048285 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051225 GO:0051252 GO:0060255 GO:0065007 GO:0070925 GO:0071840 GO:0080090 GO:0090307 GO:0097159 GO:0140014 GO:0140110 GO:1901363 GO:1902850 GO:1903047 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

159

Amino Acids

18.24

Weight (kDa)

9.68

Isoelectric Point (pI)

47.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0026628)

Species	Orthologous Gene IDs
rosa_samantha	Rh4CG053600 Rh4CG053900 Rh4DG214500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	387
AciI	CCGC	1 cut(s)	385
AclWI	GGATC	2 cut(s)	267, 459
AcsI	RAATTY	2 cut(s)	47, 81
AfaI	GTAC	1 cut(s)	396
AfiI	CCNNNNNNNGG	1 cut(s)	348
AflIII	ACRYGT	1 cut(s)	53
AgsI	TTSAA	6 cut(s)	138, 177, 225, 252, 266, 434
AjuI	GAANNNNNNNTTGG	2 cut(s)	352, 384
AluBI	AGCT	2 cut(s)	26, 403
AluI	AGCT	2 cut(s)	26, 403
Alw21I	GWGCWC	1 cut(s)	405
AlwI	GGATC	2 cut(s)	267, 459
AlwNI	CAGNNNCTG	1 cut(s)	454
Ama87I	CYCGRG	1 cut(s)	398
AoxI	GGCC	1 cut(s)	37
ApeKI	GCWGC	1 cut(s)	373
ApoI	RAATTY	2 cut(s)	47, 81
AspS9I	GGNCC	1 cut(s)	339
AsuHPI	GGTGA	1 cut(s)	418
AvaI	CYCGRG	1 cut(s)	398
AvaII	GGWCC	1 cut(s)	339
AxyI	CCTNAGG	1 cut(s)	300
BanII	GRGCYC	1 cut(s)	405
Bbv12I	GWGCWC	1 cut(s)	405
BbvI	GCAGC	1 cut(s)	360
BfaI	CTAG	1 cut(s)	185
BisI	GCNGC	1 cut(s)	374
BlsI	GCNGC	1 cut(s)	375
Bme18I	GGWCC	1 cut(s)	339
BmeT110I	CYCGRG	1 cut(s)	398
BmgT120I	GGNCC	1 cut(s)	339
BmiI	GGNNCC	1 cut(s)	341
BsaAI	YACGTR	1 cut(s)	394
Bsc4I	CCNNNNNNNGG	1 cut(s)	348
Bse21I	CCTNAGG	1 cut(s)	300
BseGI	GGATG	1 cut(s)	72
BseLI	CCNNNNNNNGG	1 cut(s)	348
BseMII	CTCAG	1 cut(s)	36
BseXI	GCAGC	1 cut(s)	360
BshFI	GGCC	1 cut(s)	39
BsiHKAI	GWGCWC	1 cut(s)	405
BsiHKCI	CYCGRG	1 cut(s)	398
BslI	CCNNNNNNNGG	1 cut(s)	348
BsmI	GAATGC	1 cut(s)	360
BsnI	GGCC	1 cut(s)	39
BsoBI	CYCGRG	1 cut(s)	398
Bsp1286I	GDGCHC	1 cut(s)	405
Bsp143I	GATC	3 cut(s)	98, 259, 451
BspACI	CCGC	1 cut(s)	385
BspANI	GGCC	1 cut(s)	39
BspCNI	CTCAG	1 cut(s)	35
BspHI	TCATGA	1 cut(s)	7
BspLI	GGNNCC	1 cut(s)	341
BspPI	GGATC	2 cut(s)	267, 459
BsrBI	CCGCTC	1 cut(s)	387
BssMI	GATC	3 cut(s)	98, 259, 451
Bst4CI	ACNGT	1 cut(s)	291
BstBAI	YACGTR	1 cut(s)	394
BstDEI	CTNAG	3 cut(s)	22, 41, 300
BstF5I	GGATG	1 cut(s)	72
BstKTI	GATC	3 cut(s)	101, 262, 454
BstMBI	GATC	3 cut(s)	98, 259, 451
BstNSI	RCATGY	1 cut(s)	57
BstV1I	GCAGC	1 cut(s)	360
BstX2I	RGATCY	2 cut(s)	259, 451
BstYI	RGATCY	2 cut(s)	259, 451
Bsu36I	CCTNAGG	1 cut(s)	300
BsuRI	GGCC	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	72
BtsI	GCAGTG	1 cut(s)	444
BtsIMutI	CAGTG	1 cut(s)	444
CaiI	CAGNNNCTG	1 cut(s)	454
CciI	TCATGA	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	339
Csp6I	GTAC	1 cut(s)	395
CviAII	CATG	6 cut(s)	8, 54, 215, 295, 328, 413
CviJI	RGCY	8 cut(s)	26, 39, 248, 323, 368, 373, 403, 470
CviKI_1	RGCY	8 cut(s)	26, 39, 248, 323, 368, 373, 403, 470
CviQI	GTAC	1 cut(s)	395
DdeI	CTNAG	3 cut(s)	22, 41, 300
DpnI	GATC	3 cut(s)	100, 261, 453
DpnII	GATC	3 cut(s)	98, 259, 451
Ecl136II	GAGCTC	1 cut(s)	403
Eco24I	GRGCYC	1 cut(s)	405
Eco47I	GGWCC	1 cut(s)	339
Eco53kI	GAGCTC	1 cut(s)	403
Eco81I	CCTNAGG	1 cut(s)	300
Eco88I	CYCGRG	1 cut(s)	398
EcoICRI	GAGCTC	1 cut(s)	403
EcoRI	GAATTC	1 cut(s)	47
EcoT38I	GRGCYC	1 cut(s)	405
FaeI	CATG	6 cut(s)	11, 57, 218, 298, 331, 416
FalI	AAGNNNNNCTT	2 cut(s)	352, 384
FatI	CATG	6 cut(s)	7, 53, 214, 294, 327, 412
Fnu4HI	GCNGC	1 cut(s)	374
FokI	GGATG	1 cut(s)	59
FriOI	GRGCYC	1 cut(s)	405
Fsp4HI	GCNGC	1 cut(s)	374
FspBI	CTAG	1 cut(s)	185
GluI	GCNGC	1 cut(s)	374
HaeIII	GGCC	1 cut(s)	39
Hin1II	CATG	6 cut(s)	11, 57, 218, 298, 331, 416
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	4 cut(s)	4, 191, 221, 409
HpaI	GTTAAC	1 cut(s)	307
HphI	GGTGA	1 cut(s)	418
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	1 cut(s)	456
Hpy188III	TCNNGA	4 cut(s)	8, 162, 263, 406
Hpy8I	GTNNAC	1 cut(s)	307
HpyCH4III	ACNGT	1 cut(s)	291
HpyCH4IV	ACGT	1 cut(s)	393
HpyF3I	CTNAG	3 cut(s)	22, 41, 300
HpySE526I	ACGT	1 cut(s)	393
Hsp92II	CATG	6 cut(s)	11, 57, 218, 298, 331, 416
KspAI	GTTAAC	1 cut(s)	307
Kzo9I	GATC	3 cut(s)	98, 259, 451
LpnPI	CCDG	3 cut(s)	147, 331, 434
Lsp1109I	GCAGC	1 cut(s)	360
MaeI	CTAG	1 cut(s)	185
MaeII	ACGT	1 cut(s)	393
MalI	GATC	3 cut(s)	100, 261, 453
MbiI	CCGCTC	1 cut(s)	387
MboI	GATC	3 cut(s)	98, 259, 451
MflI	RGATCY	2 cut(s)	259, 451
MhlI	GDGCHC	1 cut(s)	405
MluCI	AATT	5 cut(s)	47, 81, 156, 252, 267
MlyI	GAGTC	1 cut(s)	403
MnlI	CCTC	3 cut(s)	222, 283, 353
MseI	TTAA	2 cut(s)	255, 306
Mva1269I	GAATGC	1 cut(s)	360
NdeII	GATC	3 cut(s)	98, 259, 451
NlaIII	CATG	6 cut(s)	11, 57, 218, 298, 331, 416
NlaIV	GGNNCC	1 cut(s)	341
NspI	RCATGY	1 cut(s)	57
PaeR7I	CTCGAG	1 cut(s)	398
PagI	TCATGA	1 cut(s)	7
PciI	ACATGT	1 cut(s)	53
PctI	GAATGC	1 cut(s)	360
PfeI	GAWTC	2 cut(s)	191, 221
PkrI	GCNGC	1 cut(s)	375
PleI	GAGTC	1 cut(s)	403
PpsI	GAGTC	1 cut(s)	403
Ppu21I	YACGTR	1 cut(s)	394
PscI	ACATGT	1 cut(s)	53
Psp124BI	GAGCTC	1 cut(s)	405
PspN4I	GGNNCC	1 cut(s)	341
PspPI	GGNCC	1 cut(s)	339
PspXI	VCTCGAGB	1 cut(s)	398
PstNI	CAGNNNCTG	1 cut(s)	454
PsuI	RGATCY	2 cut(s)	259, 451
RsaI	GTAC	1 cut(s)	396
RsaNI	GTAC	1 cut(s)	395
SacI	GAGCTC	1 cut(s)	405
SaqAI	TTAA	2 cut(s)	255, 306
SatI	GCNGC	1 cut(s)	374
Sau3AI	GATC	3 cut(s)	98, 259, 451
Sau96I	GGNCC	1 cut(s)	339
SchI	GAGTC	1 cut(s)	403
SduI	GDGCHC	1 cut(s)	405
SetI	ASST	8 cut(s)	28, 121, 186, 214, 275, 306, 396, 405
Sfr274I	CTCGAG	1 cut(s)	398
SinI	GGWCC	1 cut(s)	339
SlaI	CTCGAG	1 cut(s)	398
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	5 cut(s)	47, 81, 156, 252, 267
SsiI	CCGC	1 cut(s)	385
SspMI	CTAG	1 cut(s)	185
SstI	GAGCTC	1 cut(s)	405
TaaI	ACNGT	1 cut(s)	291
TaiI	ACGT	1 cut(s)	396
TaqI	TCGA	3 cut(s)	101, 399, 407
TasI	AATT	5 cut(s)	47, 81, 156, 252, 267
TfiI	GAWTC	2 cut(s)	191, 221
Tru1I	TTAA	2 cut(s)	255, 306
Tru9I	TTAA	2 cut(s)	255, 306
TscAI	CASTG	1 cut(s)	444
TseI	GCWGC	1 cut(s)	373
TspDTI	ATGAA	3 cut(s)	82, 204, 283
TspRI	CASTG	1 cut(s)	444
VpaK11BI	GGWCC	1 cut(s)	339
XapI	RAATTY	2 cut(s)	47, 81
XceI	RCATGY	1 cut(s)	57
XcmI	CCANNNNNNNNNTGG	1 cut(s)	436
XhoI	CTCGAG	1 cut(s)	398
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.