Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0028326

Physical Location & Seq

Genomic Coordinates Reverse (-)

52348045 .. 52348968

Gene Structure 924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG269200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 156 bp

ATGGGAAGAGCACCGTGCTGTGAAAAAGTTGGGCTAAAAAGAGGAAGGTGGACAGCCGAAGAAGACGAGATCTTGACAAACTACATTCAACTCCATGGAGAAGGCTCTTGGAGATCTTTGCCCAAGAATGCAGGCCTCGAGGGTATTATTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046148 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900384 GO:1900386 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

51

Amino Acids

5.71

Weight (kDa)

5.76

Isoelectric Point (pI)

50.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 45	2.8e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028326)

Species	Orthologous Gene IDs
malus_domestica	MD14G1135000.v1.1
rosa_samantha	Rh4CG269200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	137
AgsI	TTSAA	2 cut(s)	89, 152
Alw21I	GWGCWC	1 cut(s)	13
Ama87I	CYCGRG	1 cut(s)	137
AoxI	GGCC	1 cut(s)	133
AvaI	CYCGRG	1 cut(s)	137
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	1 cut(s)	13
BglII	AGATCT	2 cut(s)	69, 113
BmeT110I	CYCGRG	1 cut(s)	137
BpiI	GAAGAC	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	94
BseDI	CCNNGG	1 cut(s)	94
BshFI	GGCC	1 cut(s)	135
BsiHKAI	GWGCWC	1 cut(s)	13
BsiHKCI	CYCGRG	1 cut(s)	137
BsmI	GAATGC	1 cut(s)	133
BsnI	GGCC	1 cut(s)	135
BsoBI	CYCGRG	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	2 cut(s)	69, 113
Bsp19I	CCATGG	1 cut(s)	94
BspANI	GGCC	1 cut(s)	135
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	2 cut(s)	69, 113
BssT1I	CCWWGG	1 cut(s)	94
Bst4CI	ACNGT	1 cut(s)	15
BstC8I	GCNNGC	1 cut(s)	133
BstDSI	CCRYGG	1 cut(s)	94
BstKTI	GATC	2 cut(s)	72, 116
BstMBI	GATC	2 cut(s)	69, 113
BstV2I	GAAGAC	1 cut(s)	69
BstX2I	RGATCY	2 cut(s)	69, 113
BstYI	RGATCY	2 cut(s)	69, 113
BsuRI	GGCC	1 cut(s)	135
BtgI	CCRYGG	1 cut(s)	94
Cac8I	GCNNGC	1 cut(s)	133
CviAII	CATG	1 cut(s)	95
CviJI	RGCY	4 cut(s)	34, 56, 105, 135
CviKI_1	RGCY	4 cut(s)	34, 56, 105, 135
DpnI	GATC	2 cut(s)	71, 115
DpnII	GATC	2 cut(s)	69, 113
Eco130I	CCWWGG	1 cut(s)	94
Eco147I	AGGCCT	1 cut(s)	135
Eco88I	CYCGRG	1 cut(s)	137
EcoT14I	CCWWGG	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	1 cut(s)	98
FaiI	YATR	1 cut(s)	96
FatI	CATG	1 cut(s)	94
HaeIII	GGCC	1 cut(s)	135
Hin1II	CATG	1 cut(s)	98
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188III	TCNNGA	1 cut(s)	73
Hpy8I	GTNNAC	1 cut(s)	51
HpyAV	CCTTC	2 cut(s)	39, 95
HpyCH4III	ACNGT	1 cut(s)	15
HpyCH4V	TGCA	1 cut(s)	131
Hsp92II	CATG	1 cut(s)	98
Kzo9I	GATC	2 cut(s)	69, 113
LpnPI	CCDG	1 cut(s)	117
MalI	GATC	2 cut(s)	71, 115
MboI	GATC	2 cut(s)	69, 113
MboII	GAAGA	3 cut(s)	18, 71, 74
MflI	RGATCY	2 cut(s)	69, 113
MhlI	GDGCHC	1 cut(s)	13
MnlI	CCTC	3 cut(s)	35, 133, 146
Mva1269I	GAATGC	1 cut(s)	133
NcoI	CCATGG	1 cut(s)	94
NdeII	GATC	2 cut(s)	69, 113
NlaIII	CATG	1 cut(s)	98
PaeR7I	CTCGAG	1 cut(s)	137
PceI	AGGCCT	1 cut(s)	135
PctI	GAATGC	1 cut(s)	133
PspXI	VCTCGAGB	1 cut(s)	137
PsuI	RGATCY	2 cut(s)	69, 113
Sau3AI	GATC	2 cut(s)	69, 113
SduI	GDGCHC	1 cut(s)	13
SetI	ASST	1 cut(s)	50
Sfr274I	CTCGAG	1 cut(s)	137
SgeI	CNNG	9 cut(s)	27, 79, 85, 107, 120, 136, 144, 149, 151
SlaI	CTCGAG	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
SseBI	AGGCCT	1 cut(s)	135
StuI	AGGCCT	1 cut(s)	135
StyI	CCWWGG	1 cut(s)	94
TaaI	ACNGT	1 cut(s)	15
TaqI	TCGA	1 cut(s)	138
XhoI	CTCGAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.