transcription factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_samantha | Rh4AG064600 Rh4CG069700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 53 |
| AcuI | CTGAAG | 1 cut(s) | 204 |
| AfaI | GTAC | 2 cut(s) | 97, 289 |
| AhlI | ACTAGT | 1 cut(s) | 92 |
| AjiI | CACGTC | 1 cut(s) | 85 |
| AluBI | AGCT | 2 cut(s) | 188, 284 |
| AluI | AGCT | 2 cut(s) | 188, 284 |
| AoxI | GGCC | 2 cut(s) | 15, 53 |
| ApeKI | GCWGC | 1 cut(s) | 65 |
| BalI | TGGCCA | 1 cut(s) | 55 |
| BbvI | GCAGC | 1 cut(s) | 77 |
| BccI | CCATC | 1 cut(s) | 212 |
| BcuI | ACTAGT | 1 cut(s) | 92 |
| BfaI | CTAG | 2 cut(s) | 93, 285 |
| BfmI | CTRYAG | 1 cut(s) | 99 |
| BisI | GCNGC | 1 cut(s) | 66 |
| BlsI | GCNGC | 1 cut(s) | 67 |
| BmcAI | AGTACT | 2 cut(s) | 97, 289 |
| BmgBI | CACGTC | 1 cut(s) | 85 |
| BmiI | GGNNCC | 1 cut(s) | 309 |
| BpuEI | CTTGAG | 1 cut(s) | 45 |
| BsaJI | CCNNGG | 1 cut(s) | 70 |
| BseDI | CCNNGG | 1 cut(s) | 70 |
| BseGI | GGATG | 3 cut(s) | 31, 223, 241 |
| BseMII | CTCAG | 1 cut(s) | 117 |
| BseRI | GAGGAG | 1 cut(s) | 143 |
| BseXI | GCAGC | 1 cut(s) | 77 |
| BshFI | GGCC | 2 cut(s) | 17, 55 |
| BslFI | GGGAC | 1 cut(s) | 152 |
| BsmFI | GGGAC | 1 cut(s) | 152 |
| BsnI | GGCC | 2 cut(s) | 17, 55 |
| BspANI | GGCC | 2 cut(s) | 17, 55 |
| BspCNI | CTCAG | 1 cut(s) | 118 |
| BspLI | GGNNCC | 1 cut(s) | 309 |
| BssECI | CCNNGG | 1 cut(s) | 70 |
| BssT1I | CCWWGG | 1 cut(s) | 70 |
| Bst4CI | ACNGT | 1 cut(s) | 206 |
| BstDEI | CTNAG | 1 cut(s) | 126 |
| BstF5I | GGATG | 3 cut(s) | 31, 223, 241 |
| BstSFI | CTRYAG | 1 cut(s) | 99 |
| BstV1I | GCAGC | 1 cut(s) | 77 |
| BsuRI | GGCC | 2 cut(s) | 17, 55 |
| BtrI | CACGTC | 1 cut(s) | 85 |
| BtsCI | GGATG | 3 cut(s) | 31, 223, 241 |
| Csp6I | GTAC | 2 cut(s) | 96, 288 |
| CviAII | CATG | 2 cut(s) | 13, 245 |
| CviJI | RGCY | 7 cut(s) | 17, 55, 68, 138, 188, 222, 284 |
| CviKI_1 | RGCY | 7 cut(s) | 17, 55, 68, 138, 188, 222, 284 |
| CviQI | GTAC | 2 cut(s) | 96, 288 |
| DdeI | CTNAG | 1 cut(s) | 126 |
| EaeI | YGGCCR | 1 cut(s) | 53 |
| Eco130I | CCWWGG | 1 cut(s) | 70 |
| Eco57I | CTGAAG | 1 cut(s) | 204 |
| EcoT14I | CCWWGG | 1 cut(s) | 70 |
| ErhI | CCWWGG | 1 cut(s) | 70 |
| FaeI | CATG | 2 cut(s) | 16, 248 |
| FaiI | YATR | 5 cut(s) | 14, 101, 106, 152, 246 |
| FaqI | GGGAC | 1 cut(s) | 152 |
| FatI | CATG | 2 cut(s) | 12, 244 |
| Fnu4HI | GCNGC | 1 cut(s) | 66 |
| FokI | GGATG | 3 cut(s) | 38, 230, 248 |
| Fsp4HI | GCNGC | 1 cut(s) | 66 |
| FspBI | CTAG | 2 cut(s) | 93, 285 |
| GluI | GCNGC | 1 cut(s) | 66 |
| HaeIII | GGCC | 2 cut(s) | 17, 55 |
| Hin1II | CATG | 2 cut(s) | 16, 248 |
| HindIII | AAGCTT | 1 cut(s) | 186 |
| HinfI | GANTC | 1 cut(s) | 9 |
| Hpy166II | GTNNAC | 1 cut(s) | 88 |
| Hpy8I | GTNNAC | 1 cut(s) | 88 |
| Hpy99I | CGWCG | 1 cut(s) | 52 |
| HpyCH4III | ACNGT | 1 cut(s) | 206 |
| HpyCH4IV | ACGT | 1 cut(s) | 84 |
| HpyCH4V | TGCA | 1 cut(s) | 272 |
| HpyF3I | CTNAG | 1 cut(s) | 126 |
| HpySE526I | ACGT | 1 cut(s) | 84 |
| Hsp92II | CATG | 2 cut(s) | 16, 248 |
| LmnI | GCTCC | 1 cut(s) | 130 |
| LpnPI | CCDG | 4 cut(s) | 8, 65, 208, 261 |
| Lsp1109I | GCAGC | 1 cut(s) | 77 |
| MaeI | CTAG | 2 cut(s) | 93, 285 |
| MaeII | ACGT | 1 cut(s) | 84 |
| MboII | GAAGA | 2 cut(s) | 133, 183 |
| MlsI | TGGCCA | 1 cut(s) | 55 |
| MluCI | AATT | 2 cut(s) | 120, 250 |
| MluNI | TGGCCA | 1 cut(s) | 55 |
| MnlI | CCTC | 4 cut(s) | 69, 121, 180, 193 |
| Mox20I | TGGCCA | 1 cut(s) | 55 |
| MscI | TGGCCA | 1 cut(s) | 55 |
| Msp20I | TGGCCA | 1 cut(s) | 55 |
| NlaIII | CATG | 2 cut(s) | 16, 248 |
| NlaIV | GGNNCC | 1 cut(s) | 309 |
| PfeI | GAWTC | 1 cut(s) | 9 |
| PkrI | GCNGC | 1 cut(s) | 67 |
| PspN4I | GGNNCC | 1 cut(s) | 309 |
| RsaI | GTAC | 2 cut(s) | 97, 289 |
| RsaNI | GTAC | 2 cut(s) | 96, 288 |
| SatI | GCNGC | 1 cut(s) | 66 |
| ScaI | AGTACT | 2 cut(s) | 97, 289 |
| SetI | ASST | 5 cut(s) | 61, 76, 87, 190, 286 |
| SfcI | CTRYAG | 1 cut(s) | 99 |
| SmlI | CTYRAG | 1 cut(s) | 60 |
| SmoI | CTYRAG | 1 cut(s) | 60 |
| SpeI | ACTAGT | 1 cut(s) | 92 |
| Sse9I | AATT | 2 cut(s) | 120, 250 |
| SspMI | CTAG | 2 cut(s) | 93, 285 |
| StyI | CCWWGG | 1 cut(s) | 70 |
| TaaI | ACNGT | 1 cut(s) | 206 |
| TaiI | ACGT | 1 cut(s) | 87 |
| TasI | AATT | 2 cut(s) | 120, 250 |
| TatI | WGTACW | 2 cut(s) | 95, 287 |
| TfiI | GAWTC | 1 cut(s) | 9 |
| TseI | GCWGC | 1 cut(s) | 65 |
| TspDTI | ATGAA | 3 cut(s) | 17, 42, 252 |
| XspI | CTAG | 2 cut(s) | 93, 285 |
| ZrmI | AGTACT | 2 cut(s) | 97, 289 |