Rh4AG064600
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0032596
Physical Location & Seq
Forward (+)
13757899 .. 13759914
2016 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG064600.1

Sequence Viewer

Length: 402 bp
ATGGCCTTGCTGGATGAAAATGACACCAAAATATCGTCGTGGCCACCTCAAGCAGCCCAAGGTAAGCAGGACGTGGACACTAGTACTATAGCATACCCTAATAACACAATTACTGAGGAGCAAGGCTTCTTCTATTCTATGCTCAATGGTAATGTCCCTCAACAAGTTGCTGAAGCTTCTTCCAGCGAGGACAGTTTTCTGTGGGATGGCTTGTGGAACTTGGATGATGTCCATTGTCACAATCACCAAACGTTAGTGCATTGTAAAAGGTCTCCTTTTGCATCGGTGCCTGGGGTGAGTCTTGCTTTCCAAACTTACGCCCCTTCCCAGATAAGGGAGAACTTTCGTGTTAGCAAAGGCCAGAGGGCAACAGTCACCAACTACATTAAATATTTATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

133

Amino Acids

14.98

Weight (kDa)

5.17

Isoelectric Point (pI)

53.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0032596)

Species Orthologous Gene IDs
rosa_samantha Rh4AG064600 Rh4CG069700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 286
AclI AACGTT 1 cut(s) 251
AcoI YGGCCR 1 cut(s) 41
AcuI CTGAAG 1 cut(s) 192
AfaI GTAC 1 cut(s) 85
AfiI CCNNNNNNNGG 2 cut(s) 333, 334
AhlI ACTAGT 1 cut(s) 80
AjiI CACGTC 1 cut(s) 73
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 1 cut(s) 176
AluI AGCT 1 cut(s) 176
Alw26I GTCTC 1 cut(s) 276
AoxI GGCC 3 cut(s) 3, 41, 358
ApeKI GCWGC 1 cut(s) 53
AsuHPI GGTGA 3 cut(s) 236, 307, 367
BalI TGGCCA 1 cut(s) 43
BanI GGYRCC 1 cut(s) 286
BbvI GCAGC 1 cut(s) 65
BccI CCATC 1 cut(s) 200
BciT130I CCWGG 1 cut(s) 291
BcoDI GTCTC 1 cut(s) 276
BcuI ACTAGT 1 cut(s) 80
BfaI CTAG 1 cut(s) 81
BfmI CTRYAG 1 cut(s) 87
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
BmcAI AGTACT 1 cut(s) 85
Bme1390I CCNGG 1 cut(s) 291
BmgBI CACGTC 1 cut(s) 73
BmiI GGNNCC 1 cut(s) 288
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 1 cut(s) 290
BpuEI CTTGAG 1 cut(s) 33
BsaI GGTCTC 1 cut(s) 276
BsaJI CCNNGG 2 cut(s) 58, 290
Bsc4I CCNNNNNNNGG 2 cut(s) 333, 334
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 2 cut(s) 58, 290
BseGI GGATG 3 cut(s) 19, 211, 229
BseLI CCNNNNNNNGG 2 cut(s) 333, 334
BseMII CTCAG 1 cut(s) 105
BseRI GAGGAG 1 cut(s) 131
BseXI GCAGC 1 cut(s) 65
BshFI GGCC 3 cut(s) 5, 43, 360
BshNI GGYRCC 1 cut(s) 286
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 2 cut(s) 333, 334
BsmAI GTCTC 1 cut(s) 276
BsmFI GGGAC 1 cut(s) 140
BsnI GGCC 3 cut(s) 5, 43, 360
Bso31I GGTCTC 1 cut(s) 276
BspANI GGCC 3 cut(s) 5, 43, 360
BspCNI CTCAG 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 288
BspT107I GGYRCC 1 cut(s) 286
BspTNI GGTCTC 1 cut(s) 276
BssECI CCNNGG 2 cut(s) 58, 290
BssT1I CCWWGG 1 cut(s) 58
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 2 cut(s) 194, 373
BstDEI CTNAG 1 cut(s) 114
BstF5I GGATG 3 cut(s) 19, 211, 229
BstMAI GTCTC 1 cut(s) 276
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 1 cut(s) 87
BstV1I GCAGC 1 cut(s) 65
BsuRI GGCC 3 cut(s) 5, 43, 360
BtrI CACGTC 1 cut(s) 73
BtsCI GGATG 3 cut(s) 19, 211, 229
Csp6I GTAC 1 cut(s) 84
CviJI RGCY 7 cut(s) 5, 43, 56, 126, 176, 210, 360
CviKI_1 RGCY 7 cut(s) 5, 43, 56, 126, 176, 210, 360
CviQI GTAC 1 cut(s) 84
DdeI CTNAG 1 cut(s) 114
EaeI YGGCCR 1 cut(s) 41
Eco130I CCWWGG 1 cut(s) 58
Eco31I GGTCTC 1 cut(s) 276
Eco57I CTGAAG 1 cut(s) 192
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 58
FaiI YATR 4 cut(s) 89, 94, 140, 397
FalI AAGNNNNNCTT 2 cut(s) 259, 291
FaqI GGGAC 1 cut(s) 140
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 3 cut(s) 26, 218, 236
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 1 cut(s) 81
GluI GCNGC 1 cut(s) 54
HaeIII GGCC 3 cut(s) 5, 43, 360
HindIII AAGCTT 1 cut(s) 174
HinfI GANTC 1 cut(s) 298
HphI GGTGA 3 cut(s) 236, 307, 367
Hpy166II GTNNAC 1 cut(s) 76
Hpy8I GTNNAC 1 cut(s) 76
Hpy99I CGWCG 1 cut(s) 40
HpyAV CCTTC 1 cut(s) 333
HpyCH4III ACNGT 2 cut(s) 194, 373
HpyCH4IV ACGT 2 cut(s) 72, 251
HpyCH4V TGCA 2 cut(s) 259, 281
HpyF3I CTNAG 1 cut(s) 114
HpySE526I ACGT 2 cut(s) 72, 251
LmnI GCTCC 1 cut(s) 118
LpnPI CCDG 6 cut(s) 53, 196, 276, 303, 341, 374
Lsp1109I GCAGC 1 cut(s) 65
LweI GCATC 1 cut(s) 290
MaeI CTAG 1 cut(s) 81
MaeII ACGT 2 cut(s) 72, 251
MaeIII GTNAC 2 cut(s) 236, 373
MboII GAAGA 2 cut(s) 121, 171
MlsI TGGCCA 1 cut(s) 43
MluCI AATT 1 cut(s) 108
MluNI TGGCCA 1 cut(s) 43
MlyI GAGTC 1 cut(s) 307
MnlI CCTC 5 cut(s) 57, 109, 168, 181, 357
Mox20I TGGCCA 1 cut(s) 43
MscI TGGCCA 1 cut(s) 43
MseI TTAA 1 cut(s) 387
Msp20I TGGCCA 1 cut(s) 43
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
NlaIV GGNNCC 1 cut(s) 288
NmuCI GTSAC 2 cut(s) 236, 373
PkrI GCNGC 1 cut(s) 55
PleI GAGTC 1 cut(s) 306
PpsI GAGTC 1 cut(s) 306
Psp1406I AACGTT 1 cut(s) 251
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 288
RsaI GTAC 1 cut(s) 85
RsaNI GTAC 1 cut(s) 84
SaqAI TTAA 1 cut(s) 387
SatI GCNGC 1 cut(s) 54
ScaI AGTACT 1 cut(s) 85
SchI GAGTC 1 cut(s) 307
ScrFI CCNGG 1 cut(s) 291
SetI ASST 6 cut(s) 49, 64, 75, 178, 254, 272
SfaNI GCATC 1 cut(s) 290
SfcI CTRYAG 1 cut(s) 87
SmlI CTYRAG 1 cut(s) 48
SmoI CTYRAG 1 cut(s) 48
SpeI ACTAGT 1 cut(s) 80
Sse9I AATT 1 cut(s) 108
SspI AATATT 1 cut(s) 392
SspMI CTAG 1 cut(s) 81
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 1 cut(s) 58
TaaI ACNGT 2 cut(s) 194, 373
TaiI ACGT 2 cut(s) 75, 254
TasI AATT 1 cut(s) 108
TatI WGTACW 1 cut(s) 83
Tru1I TTAA 1 cut(s) 387
Tru9I TTAA 1 cut(s) 387
TseFI GTSAC 2 cut(s) 236, 373
TseI GCWGC 1 cut(s) 53
Tsp45I GTSAC 2 cut(s) 236, 373
TspDTI ATGAA 1 cut(s) 30
XspI CTAG 1 cut(s) 81
ZrmI AGTACT 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.