Transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_laevigata | RLG00000006931 |
| rosa_samantha | Rh3BG072500 Rh3CG070700 Rh3DG073200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 592 |
| AccB1I | GGYRCC | 1 cut(s) | 96 |
| AcsI | RAATTY | 1 cut(s) | 333 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 432, 557 |
| AgsI | TTSAA | 3 cut(s) | 44, 74, 509 |
| AjnI | CCWGG | 1 cut(s) | 99 |
| AluBI | AGCT | 4 cut(s) | 113, 227, 528, 554 |
| AluI | AGCT | 4 cut(s) | 113, 227, 528, 554 |
| Alw21I | GWGCWC | 1 cut(s) | 206 |
| Ama87I | CYCGRG | 1 cut(s) | 108 |
| ApeKI | GCWGC | 1 cut(s) | 528 |
| ApoI | RAATTY | 1 cut(s) | 333 |
| AseI | ATTAAT | 1 cut(s) | 491 |
| AspS9I | GGNCC | 2 cut(s) | 7, 36 |
| AsuC2I | CCSGG | 1 cut(s) | 168 |
| AsuHPI | GGTGA | 3 cut(s) | 283, 494, 540 |
| AvaI | CYCGRG | 1 cut(s) | 108 |
| AvaII | GGWCC | 2 cut(s) | 7, 36 |
| BanI | GGYRCC | 1 cut(s) | 96 |
| BauI | CACGAG | 1 cut(s) | 205 |
| BbsI | GAAGAC | 1 cut(s) | 166 |
| Bbv12I | GWGCWC | 1 cut(s) | 206 |
| BbvI | GCAGC | 1 cut(s) | 515 |
| BccI | CCATC | 3 cut(s) | 87, 287, 479 |
| BciT130I | CCWGG | 1 cut(s) | 101 |
| BcnI | CCSGG | 1 cut(s) | 168 |
| BfaI | CTAG | 2 cut(s) | 230, 471 |
| BfmI | CTRYAG | 3 cut(s) | 114, 529, 555 |
| BisI | GCNGC | 1 cut(s) | 529 |
| BlsI | GCNGC | 1 cut(s) | 530 |
| Bme1390I | CCNGG | 2 cut(s) | 101, 168 |
| Bme18I | GGWCC | 2 cut(s) | 7, 36 |
| BmeT110I | CYCGRG | 1 cut(s) | 108 |
| BmgT120I | GGNCC | 2 cut(s) | 7, 36 |
| BmiI | GGNNCC | 2 cut(s) | 98, 105 |
| BmrFI | CCNGG | 2 cut(s) | 101, 168 |
| BpiI | GAAGAC | 1 cut(s) | 166 |
| BpuMI | CCSGG | 1 cut(s) | 168 |
| BsaJI | CCNNGG | 1 cut(s) | 167 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 432, 557 |
| Bse1I | ACTGG | 2 cut(s) | 250, 484 |
| BseBI | CCWGG | 1 cut(s) | 101 |
| BseDI | CCNNGG | 1 cut(s) | 167 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 432, 557 |
| BseMII | CTCAG | 1 cut(s) | 77 |
| BseNI | ACTGG | 2 cut(s) | 250, 484 |
| BseRI | GAGGAG | 1 cut(s) | 452 |
| BseXI | GCAGC | 1 cut(s) | 515 |
| BshNI | GGYRCC | 1 cut(s) | 96 |
| BsiHKAI | GWGCWC | 1 cut(s) | 206 |
| BsiHKCI | CYCGRG | 1 cut(s) | 108 |
| BsiSI | CCGG | 2 cut(s) | 156, 167 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 432, 557 |
| BsoBI | CYCGRG | 1 cut(s) | 108 |
| Bsp1286I | GDGCHC | 1 cut(s) | 206 |
| Bsp143I | GATC | 2 cut(s) | 340, 499 |
| BspCNI | CTCAG | 1 cut(s) | 76 |
| BspLI | GGNNCC | 2 cut(s) | 98, 105 |
| BspMAI | CTGCAG | 1 cut(s) | 533 |
| BspT107I | GGYRCC | 1 cut(s) | 96 |
| BsrI | ACTGG | 2 cut(s) | 250, 484 |
| BssECI | CCNNGG | 1 cut(s) | 167 |
| BssMI | GATC | 2 cut(s) | 340, 499 |
| BssSI | CACGAG | 1 cut(s) | 205 |
| Bst2BI | CACGAG | 1 cut(s) | 205 |
| Bst2UI | CCWGG | 1 cut(s) | 101 |
| Bst4CI | ACNGT | 1 cut(s) | 317 |
| BstDEI | CTNAG | 1 cut(s) | 63 |
| BstKTI | GATC | 2 cut(s) | 343, 502 |
| BstMBI | GATC | 2 cut(s) | 340, 499 |
| BstNI | CCWGG | 1 cut(s) | 101 |
| BstNSI | RCATGY | 1 cut(s) | 468 |
| BstSCI | CCNGG | 2 cut(s) | 99, 166 |
| BstSFI | CTRYAG | 3 cut(s) | 114, 529, 555 |
| BstV1I | GCAGC | 1 cut(s) | 515 |
| BstV2I | GAAGAC | 1 cut(s) | 166 |
| BtsIMutI | CAGTG | 2 cut(s) | 71, 243 |
| Cfr13I | GGNCC | 2 cut(s) | 7, 36 |
| CsiI | ACCWGGT | 1 cut(s) | 99 |
| CviAII | CATG | 2 cut(s) | 33, 465 |
| CviJI | RGCY | 8 cut(s) | 113, 211, 227, 277, 299, 425, 528, 554 |
| CviKI_1 | RGCY | 8 cut(s) | 113, 211, 227, 277, 299, 425, 528, 554 |
| DdeI | CTNAG | 1 cut(s) | 63 |
| DpnI | GATC | 2 cut(s) | 342, 501 |
| DpnII | GATC | 2 cut(s) | 340, 499 |
| Eco47I | GGWCC | 2 cut(s) | 7, 36 |
| Eco88I | CYCGRG | 1 cut(s) | 108 |
| EcoRI | GAATTC | 1 cut(s) | 333 |
| EcoRII | CCWGG | 1 cut(s) | 99 |
| FaeI | CATG | 2 cut(s) | 36, 468 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 39, 71 |
| FatI | CATG | 2 cut(s) | 32, 464 |
| Fnu4HI | GCNGC | 1 cut(s) | 529 |
| Fsp4HI | GCNGC | 1 cut(s) | 529 |
| FspBI | CTAG | 2 cut(s) | 230, 471 |
| GluI | GCNGC | 1 cut(s) | 529 |
| HapII | CCGG | 2 cut(s) | 156, 167 |
| Hin1II | CATG | 2 cut(s) | 36, 468 |
| HinfI | GANTC | 1 cut(s) | 61 |
| HpaII | CCGG | 2 cut(s) | 156, 167 |
| HphI | GGTGA | 3 cut(s) | 283, 494, 540 |
| Hpy188I | TCNGA | 4 cut(s) | 60, 313, 355, 514 |
| Hpy188III | TCNNGA | 2 cut(s) | 230, 338 |
| HpyAV | CCTTC | 2 cut(s) | 80, 397 |
| HpyCH4III | ACNGT | 1 cut(s) | 317 |
| HpyCH4V | TGCA | 4 cut(s) | 32, 69, 497, 531 |
| HpyF3I | CTNAG | 1 cut(s) | 63 |
| Hsp92II | CATG | 2 cut(s) | 36, 468 |
| Kzo9I | GATC | 2 cut(s) | 340, 499 |
| LmnI | GCTCC | 1 cut(s) | 201 |
| Lsp1109I | GCAGC | 1 cut(s) | 515 |
| MabI | ACCWGGT | 1 cut(s) | 99 |
| MaeI | CTAG | 2 cut(s) | 230, 471 |
| MalI | GATC | 2 cut(s) | 342, 501 |
| MboI | GATC | 2 cut(s) | 340, 499 |
| MboII | GAAGA | 5 cut(s) | 56, 59, 102, 171, 315 |
| MhlI | GDGCHC | 1 cut(s) | 206 |
| MluCI | AATT | 5 cut(s) | 264, 333, 408, 492, 536 |
| MlyI | GAGTC | 1 cut(s) | 55 |
| MmeI | TCCRAC | 1 cut(s) | 404 |
| MnlI | CCTC | 5 cut(s) | 117, 165, 201, 430, 433 |
| MseI | TTAA | 2 cut(s) | 419, 491 |
| MspI | CCGG | 2 cut(s) | 156, 167 |
| MspR9I | CCNGG | 2 cut(s) | 101, 168 |
| MvaI | CCWGG | 1 cut(s) | 101 |
| NciI | CCSGG | 1 cut(s) | 168 |
| NdeII | GATC | 2 cut(s) | 340, 499 |
| NlaIII | CATG | 2 cut(s) | 36, 468 |
| NlaIV | GGNNCC | 2 cut(s) | 98, 105 |
| NspI | RCATGY | 1 cut(s) | 468 |
| PaeR7I | CTCGAG | 1 cut(s) | 108 |
| PkrI | GCNGC | 1 cut(s) | 530 |
| PleI | GAGTC | 1 cut(s) | 55 |
| PpsI | GAGTC | 1 cut(s) | 55 |
| PshBI | ATTAAT | 1 cut(s) | 491 |
| PsiI | TTATAA | 1 cut(s) | 592 |
| Psp6I | CCWGG | 1 cut(s) | 99 |
| PspGI | CCWGG | 1 cut(s) | 99 |
| PspN4I | GGNNCC | 2 cut(s) | 98, 105 |
| PspPI | GGNCC | 2 cut(s) | 7, 36 |
| PspXI | VCTCGAGB | 1 cut(s) | 108 |
| PstI | CTGCAG | 1 cut(s) | 533 |
| SaqAI | TTAA | 2 cut(s) | 419, 491 |
| SatI | GCNGC | 1 cut(s) | 529 |
| Sau3AI | GATC | 2 cut(s) | 340, 499 |
| Sau96I | GGNCC | 2 cut(s) | 7, 36 |
| SchI | GAGTC | 1 cut(s) | 55 |
| ScrFI | CCNGG | 2 cut(s) | 101, 168 |
| SduI | GDGCHC | 1 cut(s) | 206 |
| SexAI | ACCWGGT | 1 cut(s) | 99 |
| SfcI | CTRYAG | 3 cut(s) | 114, 529, 555 |
| Sfr274I | CTCGAG | 1 cut(s) | 108 |
| SinI | GGWCC | 2 cut(s) | 7, 36 |
| SlaI | CTCGAG | 1 cut(s) | 108 |
| SmlI | CTYRAG | 1 cut(s) | 108 |
| SmoI | CTYRAG | 1 cut(s) | 108 |
| Sse9I | AATT | 5 cut(s) | 264, 333, 408, 492, 536 |
| SspMI | CTAG | 2 cut(s) | 230, 471 |
| StyD4I | CCNGG | 2 cut(s) | 99, 166 |
| TaaI | ACNGT | 1 cut(s) | 317 |
| TaqI | TCGA | 1 cut(s) | 109 |
| TasI | AATT | 5 cut(s) | 264, 333, 408, 492, 536 |
| Tru1I | TTAA | 2 cut(s) | 419, 491 |
| Tru9I | TTAA | 2 cut(s) | 419, 491 |
| TscAI | CASTG | 2 cut(s) | 71, 250 |
| TseI | GCWGC | 1 cut(s) | 528 |
| TspDTI | ATGAA | 2 cut(s) | 17, 579 |
| TspGWI | ACGGA | 2 cut(s) | 96, 229 |
| TspRI | CASTG | 2 cut(s) | 71, 250 |
| VpaK11BI | GGWCC | 2 cut(s) | 7, 36 |
| VspI | ATTAAT | 1 cut(s) | 491 |
| XapI | RAATTY | 1 cut(s) | 333 |
| XbaI | TCTAGA | 1 cut(s) | 229 |
| XceI | RCATGY | 1 cut(s) | 468 |
| XhoI | CTCGAG | 1 cut(s) | 108 |
| XspI | CTAG | 2 cut(s) | 230, 471 |