Rh2BG474800
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0031136
Physical Location & Seq
Reverse (-)
67011520 .. 67011744
225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG474800.1

Sequence Viewer

Length: 225 bp
ATGGAGGAGGAGGACGAGAGAATCGCCGCAGCGCATTCTAAGTACCCGTCCATGGTCCACCACAGTTTCGTCGGCAGCGGAGGCTATTTGATTGAGGAGCATCATCACCACCACCTCAGGCCGGAGAAGAAATCGGCGATGGTTTCGGTGTTTGGCCAAGGATACAGTCCAACGAGCTCATCTGTATTTGACGTCAACGACTCTGGCACGGTGCTTGCAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

74

Amino Acids

8.14

Weight (kDa)

5.82

Isoelectric Point (pI)

53.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031136)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001516.1_g000034
rosa_samantha Rh2BG474800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 195
AciI CCGC 2 cut(s) 27, 78
AcoI YGGCCR 1 cut(s) 154
AcyI GRCGYC 1 cut(s) 192
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 2 cut(s) 52, 121
AluBI AGCT 1 cut(s) 177
AluI AGCT 1 cut(s) 177
Alw21I GWGCWC 1 cut(s) 179
AoxI GGCC 2 cut(s) 119, 154
ApeKI GCWGC 2 cut(s) 29, 75
AspLEI GCGC 1 cut(s) 34
AspS9I GGNCC 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 98
AvaII GGWCC 1 cut(s) 55
AxyI CCTNAGG 1 cut(s) 116
BalI TGGCCA 1 cut(s) 156
BanII GRGCYC 1 cut(s) 179
Bbv12I GWGCWC 1 cut(s) 179
BbvI GCAGC 2 cut(s) 41, 87
BccI CCATC 1 cut(s) 133
BciVI GTATCC 1 cut(s) 155
BfaI CTAG 1 cut(s) 223
BfuI GTATCC 1 cut(s) 155
BisI GCNGC 3 cut(s) 27, 30, 76
BlsI GCNGC 3 cut(s) 28, 31, 77
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 55
BmsI GCATC 1 cut(s) 109
BsaHI GRCGYC 1 cut(s) 192
BsaJI CCNNGG 2 cut(s) 51, 157
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 121
Bse21I CCTNAGG 1 cut(s) 116
BseDI CCNNGG 2 cut(s) 51, 157
BseLI CCNNNNNNNGG 2 cut(s) 52, 121
BseMII CTCAG 1 cut(s) 130
BseRI GAGGAG 3 cut(s) 20, 23, 110
BseXI GCAGC 2 cut(s) 41, 87
BshFI GGCC 2 cut(s) 121, 156
BsiHKAI GWGCWC 1 cut(s) 179
BsiSI CCGG 1 cut(s) 122
BslI CCNNNNNNNGG 2 cut(s) 52, 121
BsmI GAATGC 1 cut(s) 34
BsnI GGCC 2 cut(s) 121, 156
Bsp1286I GDGCHC 1 cut(s) 179
Bsp19I CCATGG 1 cut(s) 51
BspACI CCGC 2 cut(s) 27, 78
BspANI GGCC 2 cut(s) 121, 156
BspCNI CTCAG 1 cut(s) 129
BssECI CCNNGG 2 cut(s) 51, 157
BssNI GRCGYC 1 cut(s) 192
BssT1I CCWWGG 2 cut(s) 51, 157
Bst4CI ACNGT 3 cut(s) 65, 167, 211
BstACI GRCGYC 1 cut(s) 192
BstC8I GCNNGC 1 cut(s) 216
BstDEI CTNAG 2 cut(s) 39, 116
BstDSI CCRYGG 1 cut(s) 51
BstHHI GCGC 1 cut(s) 34
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstV1I GCAGC 2 cut(s) 41, 87
Bsu36I CCTNAGG 1 cut(s) 116
BsuI GTATCC 1 cut(s) 155
BsuRI GGCC 2 cut(s) 121, 156
BtgI CCRYGG 1 cut(s) 51
BtgZI GCGATG 1 cut(s) 152
Cac8I GCNNGC 1 cut(s) 216
CfoI GCGC 1 cut(s) 34
Cfr13I GGNCC 1 cut(s) 55
Csp6I GTAC 1 cut(s) 43
CviAII CATG 1 cut(s) 52
CviJI RGCY 4 cut(s) 84, 121, 156, 177
CviKI_1 RGCY 4 cut(s) 84, 121, 156, 177
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 2 cut(s) 39, 116
EaeI YGGCCR 1 cut(s) 154
Ecl136II GAGCTC 1 cut(s) 177
Eco130I CCWWGG 2 cut(s) 51, 157
Eco24I GRGCYC 1 cut(s) 179
Eco47I GGWCC 1 cut(s) 55
Eco53kI GAGCTC 1 cut(s) 177
Eco81I CCTNAGG 1 cut(s) 116
EcoICRI GAGCTC 1 cut(s) 177
EcoT14I CCWWGG 2 cut(s) 51, 157
EcoT38I GRGCYC 1 cut(s) 179
ErhI CCWWGG 2 cut(s) 51, 157
FaeI CATG 1 cut(s) 55
FaiI YATR 1 cut(s) 53
FatI CATG 1 cut(s) 51
Fnu4HI GCNGC 3 cut(s) 27, 30, 76
FriOI GRGCYC 1 cut(s) 179
Fsp4HI GCNGC 3 cut(s) 27, 30, 76
FspBI CTAG 1 cut(s) 223
GlaI GCGC 1 cut(s) 33
GluI GCNGC 3 cut(s) 27, 30, 76
HaeIII GGCC 2 cut(s) 121, 156
HapII CCGG 1 cut(s) 122
HhaI GCGC 1 cut(s) 34
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 1 cut(s) 55
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HinfI GANTC 2 cut(s) 21, 200
HpaII CCGG 1 cut(s) 122
HphI GGTGA 1 cut(s) 98
Hpy166II GTNNAC 2 cut(s) 58, 196
Hpy8I GTNNAC 2 cut(s) 58, 196
Hpy99I CGWCG 1 cut(s) 74
HpyCH4III ACNGT 3 cut(s) 65, 167, 211
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 1 cut(s) 218
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
HpyF3I CTNAG 2 cut(s) 39, 116
HpySE526I ACGT 1 cut(s) 192
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 1 cut(s) 55
HspAI GCGC 1 cut(s) 32
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 3 cut(s) 103, 135, 189
Lsp1109I GCAGC 2 cut(s) 41, 87
LweI GCATC 1 cut(s) 109
MaeI CTAG 1 cut(s) 223
MaeII ACGT 1 cut(s) 192
MboII GAAGA 1 cut(s) 139
MhlI GDGCHC 1 cut(s) 179
MlsI TGGCCA 1 cut(s) 156
MluNI TGGCCA 1 cut(s) 156
MlyI GAGTC 1 cut(s) 194
MmeI TCCRAC 1 cut(s) 194
MnlI CCTC 4 cut(s) 4, 74, 88, 125
Mox20I TGGCCA 1 cut(s) 156
MscI TGGCCA 1 cut(s) 156
Msp20I TGGCCA 1 cut(s) 156
MspA1I CMGCKG 1 cut(s) 78
MspI CCGG 1 cut(s) 122
Mva1269I GAATGC 1 cut(s) 34
MwoI GCNNNNNNNGC 1 cut(s) 81
NcoI CCATGG 1 cut(s) 51
NlaIII CATG 1 cut(s) 55
PctI GAATGC 1 cut(s) 34
PfeI GAWTC 1 cut(s) 21
PkrI GCNGC 3 cut(s) 28, 31, 77
PleI GAGTC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 194
Psp124BI GAGCTC 1 cut(s) 179
PspPI GGNCC 1 cut(s) 55
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SacI GAGCTC 1 cut(s) 179
SatI GCNGC 3 cut(s) 27, 30, 76
Sau96I GGNCC 1 cut(s) 55
SchI GAGTC 1 cut(s) 194
SduI GDGCHC 1 cut(s) 179
SetI ASST 3 cut(s) 117, 179, 195
SfaNI GCATC 1 cut(s) 109
SgeI CNNG 9 cut(s) 28, 58, 64, 130, 134, 170, 186, 216, 220
SinI GGWCC 1 cut(s) 55
SsiI CCGC 2 cut(s) 27, 78
SspMI CTAG 1 cut(s) 223
SstI GAGCTC 1 cut(s) 179
StyI CCWWGG 2 cut(s) 51, 157
TaaI ACNGT 3 cut(s) 65, 167, 211
TaiI ACGT 1 cut(s) 195
TauI GCSGC 1 cut(s) 29
TfiI GAWTC 1 cut(s) 21
TseI GCWGC 2 cut(s) 29, 75
VpaK11BI GGWCC 1 cut(s) 55
XspI CTAG 1 cut(s) 223
ZraI GACGTC 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.