Rmu_sc0001516.1_g000034
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001516.1
OG0031136
Physical Location & Seq
Reverse (-)
131137 .. 132731
1595 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001516.1_g000034.1.cds

Sequence Viewer

Length: 495 bp
atgagcatccatggagattatgatcgaggatggggagcagccaaaggagcctgctgcatgacaacaagattggggtggacgggcgggtactgtgacgtcgacaaaagattggcagcggcaggttgctggagaagaaagtcggcatggtggatttgtagcggtggagcggtagaagcttatatcgaaggtttgagaatcgtggttttggacacttttcttctctggttcgggtggtacgggttcaacccggaggtgaagcaccgggcgttcatggaggaggaggacgagagaatcgccgcaacgcattctaagtactcgtccatggtccaccacagcttcgtcggcagcggaggctatttgattgaggagcatcatcaccaccacctcaggccagagaagaaatcggcgatggtttcggtgtttggccaaggatacagtccaacgagctcatctgtatttgacgtcaacgactctggcacggtgcttgcagtctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

164

Amino Acids

18.28

Weight (kDa)

6.54

Isoelectric Point (pI)

47.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031136)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001516.1_g000034
rosa_samantha Rh2BG474800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 99, 465
Acc36I ACCTGC 1 cut(s) 110
AccBSI CCGCTC 1 cut(s) 167
AccI GTMKAC 1 cut(s) 99
AciI CCGC 6 cut(s) 84, 116, 159, 167, 297, 348
AcoI YGGCCR 1 cut(s) 424
AcyI GRCGYC 2 cut(s) 96, 462
AfaI GTAC 3 cut(s) 89, 236, 314
AgsI TTSAA 1 cut(s) 244
AluBI AGCT 3 cut(s) 176, 336, 447
AluI AGCT 3 cut(s) 176, 336, 447
Alw21I GWGCWC 1 cut(s) 449
AoxI GGCC 2 cut(s) 389, 424
ApeKI GCWGC 4 cut(s) 38, 54, 113, 345
AspS9I GGNCC 1 cut(s) 325
AsuC2I CCSGG 2 cut(s) 248, 263
AsuHPI GGTGA 2 cut(s) 265, 368
AvaII GGWCC 1 cut(s) 325
AxyI CCTNAGG 1 cut(s) 386
BalI TGGCCA 1 cut(s) 426
BanII GRGCYC 1 cut(s) 449
Bbv12I GWGCWC 1 cut(s) 449
BbvI GCAGC 4 cut(s) 41, 50, 125, 357
BccI CCATC 2 cut(s) 24, 403
BciVI GTATCC 1 cut(s) 425
BcnI CCSGG 2 cut(s) 248, 263
BfaI CTAG 1 cut(s) 493
BfuAI ACCTGC 1 cut(s) 110
BfuI GTATCC 1 cut(s) 425
BisI GCNGC 6 cut(s) 39, 55, 114, 117, 297, 346
BlsI GCNGC 6 cut(s) 40, 56, 115, 118, 298, 347
BmcAI AGTACT 1 cut(s) 314
Bme1390I CCNGG 2 cut(s) 248, 263
Bme18I GGWCC 1 cut(s) 325
BmgT120I GGNCC 1 cut(s) 325
BmiI GGNNCC 1 cut(s) 49
BmrFI CCNGG 2 cut(s) 248, 263
BmsI GCATC 2 cut(s) 15, 379
BpmI CTGGAG 1 cut(s) 148
BpuMI CCSGG 2 cut(s) 248, 263
BsaBI GATNNNNATC 1 cut(s) 21
BsaHI GRCGYC 2 cut(s) 96, 462
BsaJI CCNNGG 3 cut(s) 10, 321, 427
Bse21I CCTNAGG 1 cut(s) 386
Bse8I GATNNNNATC 1 cut(s) 21
BseDI CCNNGG 3 cut(s) 10, 321, 427
BseGI GGATG 2 cut(s) 6, 35
BseJI GATNNNNATC 1 cut(s) 21
BseMII CTCAG 1 cut(s) 400
BseRI GAGGAG 3 cut(s) 290, 293, 380
BseXI GCAGC 4 cut(s) 41, 50, 125, 357
BshFI GGCC 2 cut(s) 391, 426
BsiHKAI GWGCWC 1 cut(s) 449
BsiSI CCGG 2 cut(s) 248, 262
BsmI GAATGC 1 cut(s) 304
BsnI GGCC 2 cut(s) 391, 426
Bsp1286I GDGCHC 1 cut(s) 449
Bsp143I GATC 1 cut(s) 22
Bsp19I CCATGG 2 cut(s) 10, 321
BspACI CCGC 6 cut(s) 84, 116, 159, 167, 297, 348
BspANI GGCC 2 cut(s) 391, 426
BspCNI CTCAG 1 cut(s) 399
BspLI GGNNCC 1 cut(s) 49
BspMI ACCTGC 1 cut(s) 110
BsrBI CCGCTC 1 cut(s) 167
BssECI CCNNGG 3 cut(s) 10, 321, 427
BssMI GATC 1 cut(s) 22
BssNI GRCGYC 2 cut(s) 96, 462
BssT1I CCWWGG 3 cut(s) 10, 321, 427
Bst4CI ACNGT 3 cut(s) 92, 437, 481
BstACI GRCGYC 2 cut(s) 96, 462
BstC8I GCNNGC 2 cut(s) 52, 486
BstDEI CTNAG 2 cut(s) 309, 386
BstDSI CCRYGG 2 cut(s) 10, 321
BstF5I GGATG 2 cut(s) 6, 35
BstKTI GATC 1 cut(s) 25
BstMBI GATC 1 cut(s) 22
BstMWI GCNNNNNNNGC 4 cut(s) 47, 173, 342, 351
BstSCI CCNGG 2 cut(s) 246, 261
BstV1I GCAGC 4 cut(s) 41, 50, 125, 357
Bsu36I CCTNAGG 1 cut(s) 386
BsuI GTATCC 1 cut(s) 425
BsuRI GGCC 2 cut(s) 391, 426
BtgI CCRYGG 2 cut(s) 10, 321
BtgZI GCGATG 1 cut(s) 422
BtsCI GGATG 2 cut(s) 6, 35
BveI ACCTGC 1 cut(s) 110
Cac8I GCNNGC 2 cut(s) 52, 486
Cfr13I GGNCC 1 cut(s) 325
Csp6I GTAC 3 cut(s) 88, 235, 313
CviAII CATG 5 cut(s) 11, 58, 144, 271, 322
CviJI RGCY 8 cut(s) 41, 50, 176, 336, 354, 391, 426, 447
CviKI_1 RGCY 8 cut(s) 41, 50, 176, 336, 354, 391, 426, 447
CviQI GTAC 3 cut(s) 88, 235, 313
DdeI CTNAG 2 cut(s) 309, 386
DpnI GATC 1 cut(s) 24
DpnII GATC 1 cut(s) 22
EaeI YGGCCR 1 cut(s) 424
Ecl136II GAGCTC 1 cut(s) 447
Eco130I CCWWGG 3 cut(s) 10, 321, 427
Eco24I GRGCYC 1 cut(s) 449
Eco47I GGWCC 1 cut(s) 325
Eco53kI GAGCTC 1 cut(s) 447
Eco81I CCTNAGG 1 cut(s) 386
EcoICRI GAGCTC 1 cut(s) 447
EcoT14I CCWWGG 3 cut(s) 10, 321, 427
EcoT38I GRGCYC 1 cut(s) 449
ErhI CCWWGG 3 cut(s) 10, 321, 427
FaeI CATG 5 cut(s) 14, 61, 147, 274, 325
FaiI YATR 7 cut(s) 12, 21, 59, 145, 180, 272, 323
FatI CATG 5 cut(s) 10, 57, 143, 270, 321
FauI CCCGC 1 cut(s) 77
FblI GTMKAC 1 cut(s) 99
Fnu4HI GCNGC 6 cut(s) 39, 55, 114, 117, 297, 346
FokI GGATG 1 cut(s) 42
FriOI GRGCYC 1 cut(s) 449
Fsp4HI GCNGC 6 cut(s) 39, 55, 114, 117, 297, 346
FspBI CTAG 1 cut(s) 493
GluI GCNGC 6 cut(s) 39, 55, 114, 117, 297, 346
GsuI CTGGAG 1 cut(s) 148
HaeIII GGCC 2 cut(s) 391, 426
HapII CCGG 2 cut(s) 248, 262
Hin1I GRCGYC 2 cut(s) 96, 462
Hin1II CATG 5 cut(s) 14, 61, 147, 274, 325
HincII GTYRAC 2 cut(s) 100, 466
HindII GTYRAC 2 cut(s) 100, 466
HindIII AAGCTT 1 cut(s) 174
HinfI GANTC 3 cut(s) 195, 291, 470
HpaII CCGG 2 cut(s) 248, 262
HphI GGTGA 2 cut(s) 265, 368
Hpy166II GTNNAC 4 cut(s) 78, 100, 328, 466
Hpy8I GTNNAC 4 cut(s) 78, 100, 328, 466
Hpy99I CGWCG 2 cut(s) 101, 344
HpyAV CCTTC 1 cut(s) 179
HpyCH4III ACNGT 3 cut(s) 92, 437, 481
HpyCH4IV ACGT 2 cut(s) 96, 462
HpyCH4V TGCA 2 cut(s) 57, 488
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 173, 342, 351
HpyF3I CTNAG 2 cut(s) 309, 386
HpySE526I ACGT 2 cut(s) 96, 462
Hsp92I GRCGYC 2 cut(s) 96, 462
Hsp92II CATG 5 cut(s) 14, 61, 147, 274, 325
Kzo9I GATC 1 cut(s) 22
LmnI GCTCC 4 cut(s) 35, 47, 164, 367
LpnPI CCDG 9 cut(s) 64, 105, 112, 208, 261, 275, 373, 405, 459
Lsp1109I GCAGC 4 cut(s) 41, 50, 125, 357
LweI GCATC 2 cut(s) 15, 379
MaeI CTAG 1 cut(s) 493
MaeII ACGT 2 cut(s) 96, 462
MaeIII GTNAC 1 cut(s) 92
MalI GATC 1 cut(s) 24
MbiI CCGCTC 1 cut(s) 167
MboI GATC 1 cut(s) 22
MboII GAAGA 3 cut(s) 144, 209, 409
MhlI GDGCHC 1 cut(s) 449
MlsI TGGCCA 1 cut(s) 426
MluNI TGGCCA 1 cut(s) 426
MlyI GAGTC 1 cut(s) 464
MmeI TCCRAC 1 cut(s) 464
MnlI CCTC 8 cut(s) 20, 244, 268, 271, 274, 344, 358, 395
Mox20I TGGCCA 1 cut(s) 426
MscI TGGCCA 1 cut(s) 426
Msp20I TGGCCA 1 cut(s) 426
MspA1I CMGCKG 2 cut(s) 116, 348
MspI CCGG 2 cut(s) 248, 262
MspR9I CCNGG 2 cut(s) 248, 263
Mva1269I GAATGC 1 cut(s) 304
MwoI GCNNNNNNNGC 4 cut(s) 47, 173, 342, 351
NciI CCSGG 2 cut(s) 248, 263
NcoI CCATGG 2 cut(s) 10, 321
NdeII GATC 1 cut(s) 22
NlaIII CATG 5 cut(s) 14, 61, 147, 274, 325
NlaIV GGNNCC 1 cut(s) 49
NmuCI GTSAC 1 cut(s) 92
PctI GAATGC 1 cut(s) 304
PfeI GAWTC 2 cut(s) 195, 291
PkrI GCNGC 6 cut(s) 40, 56, 115, 118, 298, 347
PleI GAGTC 1 cut(s) 464
PpsI GAGTC 1 cut(s) 464
Psp124BI GAGCTC 1 cut(s) 449
PspN4I GGNNCC 1 cut(s) 49
PspPI GGNCC 1 cut(s) 325
RsaI GTAC 3 cut(s) 89, 236, 314
RsaNI GTAC 3 cut(s) 88, 235, 313
SacI GAGCTC 1 cut(s) 449
SalI GTCGAC 1 cut(s) 98
SatI GCNGC 6 cut(s) 39, 55, 114, 117, 297, 346
Sau3AI GATC 1 cut(s) 22
Sau96I GGNCC 1 cut(s) 325
ScaI AGTACT 1 cut(s) 314
SchI GAGTC 1 cut(s) 464
ScrFI CCNGG 2 cut(s) 248, 263
SduI GDGCHC 1 cut(s) 449
SetI ASST 9 cut(s) 99, 124, 178, 190, 255, 338, 387, 449, 465
SfaNI GCATC 2 cut(s) 15, 379
SinI GGWCC 1 cut(s) 325
SsiI CCGC 6 cut(s) 84, 116, 159, 167, 297, 348
SspMI CTAG 1 cut(s) 493
SstI GAGCTC 1 cut(s) 449
StyD4I CCNGG 2 cut(s) 246, 261
StyI CCWWGG 3 cut(s) 10, 321, 427
TaaI ACNGT 3 cut(s) 92, 437, 481
TaiI ACGT 2 cut(s) 99, 465
TaqI TCGA 3 cut(s) 25, 99, 183
TatI WGTACW 1 cut(s) 312
TauI GCSGC 2 cut(s) 119, 299
TfiI GAWTC 2 cut(s) 195, 291
TseFI GTSAC 1 cut(s) 92
TseI GCWGC 4 cut(s) 38, 54, 113, 345
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 1 cut(s) 259
VpaK11BI GGWCC 1 cut(s) 325
XmiI GTMKAC 1 cut(s) 99
XspI CTAG 1 cut(s) 493
ZraI GACGTC 2 cut(s) 97, 463
ZrmI AGTACT 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.