Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002258

Physical Location & Seq

Genomic Coordinates Forward (+)

36808041 .. 36809039

Gene Structure 999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0312000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGAGCTTGAAGGTTTATCGTATGAGTTTAATCTGTGTGAAGCTTTGGCTACTTGGGAACAGGTGCGGAATAGTACCACCATTCTCACTCGGGAGTTCATTGATTCTTTACCAAATGGATGGGAGGATTATGCATGGCGTAGGATTAATAAAGGAGTACTGCTTGACCGCTGTAAGAATAAAACTTTGTGTGTGGAGAAACTTTCTCTGGTACTCCCTTTCACACAACCATATGTCCCTCGCATGTTTGTCCATTGTGCTGTTATCGGAAACTCGGGCGATCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

95

Amino Acids

10.89

Weight (kDa)

9.55

Isoelectric Point (pI)

43.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41020
fragaria_vesca	FvH4_3g31460 FvH4_3g31460 FvH4_3g31460
malus_domestica	MD04G1037700.v1.1
prunus_persica	Prupe.6G106700_v2.0.a1 Prupe.6G106700_v2.0.a1 Prupe.6G106700_v2.0.a1 Prupe.6G210800_v2.0.a1
pyrus_communis	pycom04g03080
rosa_chinensis	RchiOBHm_Chr5g0058161 RchiOBHm_Chr7g0222751 RchiOBHm_Chr7g0222761 RchiOBHm_Chr7g0227601
rosa_laevigata	RLG00000002025 RLG00000022792 RLG00000035196
rosa_multiflora	Rmu_sc0000367.1_g000018 Rmu_sc0001772.1_g000006 Rmu_sc0002881.1_g000007 Rmu_sc0004507.1_g000034
rosa_roxburghii	Rroxscaffold_1G00022430 Rroxscaffold_6G00392510
rosa_rugosa	Rorug05G0311800 Rorug05G0311900 Rorug05G0312000 Rorug05G0312100 Rorug07G0214100
rosa_samantha	Rh3DG213100 Rh5AG380100 Rh5BG391100 Rh5CG415000 Rh5DG405800 Rh7AG356500 Rh7BG347500 Rh7BG349300 Rh7CG374000 Rh7DG351000 Rh7DG391500
rosa_wichuraiana	Rw3G017260 Rw5G035770 Rw7G030250 Rw7G032910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	66, 168
AfaI	GTAC	3 cut(s)	75, 158, 212
AgsI	TTSAA	1 cut(s)	10
AluBI	AGCT	2 cut(s)	6, 43
AluI	AGCT	2 cut(s)	6, 43
Ama87I	CYCGRG	2 cut(s)	89, 273
AseI	ATTAAT	1 cut(s)	146
AvaI	CYCGRG	2 cut(s)	89, 273
BccI	CCATC	1 cut(s)	113
BmcAI	AGTACT	1 cut(s)	158
BmeT110I	CYCGRG	2 cut(s)	89, 273
BseGI	GGATG	1 cut(s)	124
BsiHKCI	CYCGRG	2 cut(s)	89, 273
BslFI	GGGAC	1 cut(s)	220
BsmFI	GGGAC	1 cut(s)	220
BsoBI	CYCGRG	2 cut(s)	89, 273
Bsp143I	GATC	1 cut(s)	279
BspACI	CCGC	2 cut(s)	66, 168
BssMI	GATC	1 cut(s)	279
BstF5I	GGATG	1 cut(s)	124
BstKTI	GATC	1 cut(s)	282
BstMBI	GATC	1 cut(s)	279
BstNSI	RCATGY	1 cut(s)	246
BstXI	CCANNNNNNTGG	1 cut(s)	119
BtsCI	GGATG	1 cut(s)	124
Csp6I	GTAC	3 cut(s)	74, 157, 211
CviAII	CATG	2 cut(s)	134, 243
CviJI	RGCY	3 cut(s)	6, 43, 49
CviKI_1	RGCY	3 cut(s)	6, 43, 49
CviQI	GTAC	3 cut(s)	74, 157, 211
DpnI	GATC	1 cut(s)	281
DpnII	GATC	1 cut(s)	279
Eco88I	CYCGRG	2 cut(s)	89, 273
EcoT22I	ATGCAT	1 cut(s)	135
FaeI	CATG	2 cut(s)	137, 246
FaiI	YATR	6 cut(s)	23, 131, 135, 231, 233, 244
FaqI	GGGAC	1 cut(s)	220
FatI	CATG	2 cut(s)	133, 242
FauNDI	CATATG	1 cut(s)	231
FokI	GGATG	1 cut(s)	131
Hin1II	CATG	2 cut(s)	137, 246
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	1 cut(s)	103
Hpy188I	TCNGA	1 cut(s)	268
Hpy188III	TCNNGA	1 cut(s)	91
HpyAV	CCTTC	1 cut(s)	4
HpyCH4V	TGCA	1 cut(s)	133
Hsp92II	CATG	2 cut(s)	137, 246
Kzo9I	GATC	1 cut(s)	279
LpnPI	CCDG	2 cut(s)	46, 193
MalI	GATC	1 cut(s)	281
MboI	GATC	1 cut(s)	279
MnlI	CCTC	2 cut(s)	117, 248
Mph1103I	ATGCAT	1 cut(s)	135
MseI	TTAA	3 cut(s)	29, 146, 286
MspA1I	CMGCKG	1 cut(s)	170
NdeI	CATATG	1 cut(s)	231
NdeII	GATC	1 cut(s)	279
NlaIII	CATG	2 cut(s)	137, 246
NsiI	ATGCAT	1 cut(s)	135
NspI	RCATGY	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	103
PshBI	ATTAAT	1 cut(s)	146
RsaI	GTAC	3 cut(s)	75, 158, 212
RsaNI	GTAC	3 cut(s)	74, 157, 211
SaqAI	TTAA	3 cut(s)	29, 146, 286
Sau3AI	GATC	1 cut(s)	279
ScaI	AGTACT	1 cut(s)	158
SetI	ASST	4 cut(s)	8, 15, 45, 65
SsiI	CCGC	2 cut(s)	66, 168
TatI	WGTACW	1 cut(s)	156
TfiI	GAWTC	1 cut(s)	103
Tru1I	TTAA	3 cut(s)	29, 146, 286
Tru9I	TTAA	3 cut(s)	29, 146, 286
TspDTI	ATGAA	1 cut(s)	87
VspI	ATTAAT	1 cut(s)	146
XceI	RCATGY	1 cut(s)	246
ZrmI	AGTACT	1 cut(s)	158
Zsp2I	ATGCAT	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.