AT5G41020
MYB Family

cyclin-D-binding Myb-like transcription factor 1

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
16425883 .. 16427797
1915 bp
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UTR
Exon/CDS
Intron
AT5G41020.1

Sequence Viewer

Length: 1767 bp
ATGGCTGAGGAGAAGAAGAATAAGAAGAAAAAGAGTGACGCTAAGGTTGATTCTGAAGAAACCGGTGAAGAATTCATTTCCGAGCACAGTTCTATGAAGGATAAGGAAAAGAAGAGGAAGAAGAATAAGCGAGAGAATAAGGATGGTTTTACTGGAGAAGATATGGAGATAACTGGGCGTGAAAGTGAGAAACTAGGTGATGAGGTTTTTATAGTTAAGAAGAAGAAGAAGTCGAAGAAGCCAATAAGGATTGATTCTGAAGCTGTTGATGCTGTGAAGAAGAAATCGAAAAAGAGAAGTAAGGAGACAAAGGCTGATTCCGAAGCTGAGGATGATGGTGTGGAGAAGAAATCCAAGGAGAAAAGTAAGGAGACAAAGGTTGATTCTGAAGCTCATGATGGTGTGAAGAGGAAGAAGAAGAAGAGCAAGAAAGAATCTGGTGGTGATGTGATAGAAAATACTGAAAGCTCCAAAGTATCTGATAAGAAAAAGGGAAAAAGAAAGCGGGATGATACTGATTTGGGAGCTGAAGAAAACATAGACAAGGAGGTGAAGAGGAAGAACAACAAGAAGAAACCAAGTGTGGATTCAGATGTTGAAGATATCAATTTGGACTCTACAAATGATGGAAAGAAGAAAAGGAAGAAAAAGAAACAAAGTGAGGATTCAGAGACTGAAGAAAACGGCTTGAACTCTACCAAAGACGCAAAGAAGAGAAGGAAGAAGAAGAAGAAGAAGAAGCAAAGTGAAGTCTCTGAGGCTGAAGAAAAGTCTGATAAAAGTGATGAAGACTTGACCACCCCATCTACATCAAGTAAAAGGGTGAAGTTTTCTGACCAAGTGGAGTTTTTTCCTAGTGATGATGATGAAGGAACGGAAGATGATGATGAAGAAGAAGTTAAGGTGGTGAGGGGTAAGCGGTTTACAAAAGAAGAAGATGAGATGGTAAAGAATGCTGTATTAGAATACATTGATAACCATGCTTTAGGAGATGAGGGGATAAAGATGGTTATGGAATGCAAGGCATACCCACAACTTAAAGGCTGTTGGAAAGAAATTACATCTGCTTTACCTTGGAGGACTTATAATAGTGTGTATCATCGTGCACATACTATATTTGAAGCAGGATCTCAGGGGATATGGACGAAAGAGGATATTGAACTCGTTATGGAGTTTCAAAAGACACACGGGAATGATTGGAAAACACTTGCAGATGCAATGGGTAAGCACAGGAAGCATGTGAAAGACGCTTGGAGGAGAGGAAGATTGGCAGGTAAGAAGAAAGGACATTGGATGAGGGAGGAGTATCAAAACCTCTTTGACCTTGTCAACAAAGACCTTAGAATGAAAGCATTCAAAGAGAAACACTCAAAACATGGTATGCTCAAAGATAACATCCCTTGGATGGCTATAAGCGACGTACTTGAAACACGGGACCACGTGACTTGCTGCCAGAAATGGTATGAGCAGTTGATATCACCAATGGTAGCAAAGGGAATGTGGGCTAACGTTGATGACTATAGGCTCTTGGAAGAGCTTTTGAAACTGGATGCTGCTTGTATCGACGATGTGGATTGGGATAATCTTTTGGAGAATCGAGATGGAGAAGCTTGTAGAAAACGGTGGAACCAGATGATCATTCATATCGGCGTACCGAAATCGAAAACATTTGCAGAACAAGTTGAGATTTTGTCTGACAGGTATTGCCCTGACATAGCTGAGGACAGAGAGGATTTTGACAACAGACCCTATGATCCTGAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

588

Amino Acids

68.19

Weight (kDa)

8.26

Isoelectric Point (pI)

47.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 380 - 419 2.4e-06 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 381 - 439 1e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1086
Acc36I ACCTGC 1 cut(s) 1262
AciI CCGC 2 cut(s) 505, 919
AclI AACGTT 1 cut(s) 1509
AclWI GGATC 2 cut(s) 1135, 1748
AcsI RAATTY 1 cut(s) 71
AcuI CTGAAG 6 cut(s) 75, 279, 408, 549, 696, 783
AcvI CACGTG 1 cut(s) 1441
AfaI GTAC 2 cut(s) 1422, 1653
AfiI CCNNNNNNNGG 1 cut(s) 1405
AgeI ACCGGT 1 cut(s) 62
AgsI TTSAA 8 cut(s) 599, 691, 1121, 1160, 1178, 1357, 1427, 1543
AjuI GAANNNNNNNTTGG 2 cut(s) 571, 603
AluBI AGCT 8 cut(s) 263, 326, 392, 468, 527, 1537, 1610, 1718
AluI AGCT 8 cut(s) 263, 326, 392, 468, 527, 1537, 1610, 1718
Alw21I GWGCWC 2 cut(s) 87, 1108
Alw26I GTCTC 4 cut(s) 299, 365, 665, 757
Alw44I GTGCAC 1 cut(s) 1104
AlwI GGATC 2 cut(s) 1135, 1748
AlwNI CAGNNNCTG 1 cut(s) 674
ApaLI GTGCAC 1 cut(s) 1104
ApeKI GCWGC 2 cut(s) 1449, 1553
ApoI RAATTY 1 cut(s) 71
AsiGI ACCGGT 1 cut(s) 62
Asp700I GAANNNNTTC 1 cut(s) 1352
AspS9I GGNCC 1 cut(s) 1435
AsuHPI GGTGA 7 cut(s) 77, 209, 455, 562, 835, 919, 1470
AvaII GGWCC 1 cut(s) 1435
BaeGI GKGCMC 1 cut(s) 1108
BbrPI CACGTG 1 cut(s) 1441
BbsI GAAGAC 1 cut(s) 795
Bbv12I GWGCWC 2 cut(s) 87, 1108
BbvCI CCTCAGC 3 cut(s) 6, 327, 1719
BbvI GCAGC 2 cut(s) 1436, 1540
BccI CCATC 9 cut(s) 137, 329, 392, 620, 811, 937, 1000, 1399, 1595
BceAI ACGGC 1 cut(s) 700
BclI TGATCA 1 cut(s) 1635
BcoDI GTCTC 4 cut(s) 299, 365, 665, 757
BfaI CTAG 2 cut(s) 194, 855
BfmI CTRYAG 1 cut(s) 1519
BfuAI ACCTGC 1 cut(s) 1262
BisI GCNGC 2 cut(s) 1450, 1554
BlsI GCNGC 2 cut(s) 1451, 1555
Bme18I GGWCC 1 cut(s) 1435
BmgT120I GGNCC 1 cut(s) 1435
BmiI GGNNCC 2 cut(s) 1436, 1628
BmrI ACTGGG 1 cut(s) 183
BmsI GCATC 3 cut(s) 259, 1204, 1540
BmuI ACTGGG 1 cut(s) 183
BpiI GAAGAC 1 cut(s) 795
BplI GAGNNNNNCTC 2 cut(s) 1352, 1384
BpmI CTGGAG 1 cut(s) 174
Bpu10I CCTNAGC 4 cut(s) 6, 42, 327, 1719
BsaAI YACGTR 1 cut(s) 1441
BsaJI CCNNGG 3 cut(s) 354, 1073, 1400
BsaWI WCCGGW 1 cut(s) 62
Bsc4I CCNNNNNNNGG 1 cut(s) 1405
Bse118I RCCGGY 1 cut(s) 62
Bse1I ACTGG 3 cut(s) 157, 178, 1551
Bse3DI GCAATG 1 cut(s) 1224
BseDI CCNNGG 3 cut(s) 354, 1073, 1400
BseGI GGATG 7 cut(s) 148, 337, 514, 1299, 1395, 1410, 1555
BseLI CCNNNNNNNGG 1 cut(s) 1405
BseMI GCAATG 1 cut(s) 1224
BseMII CTCAG 4 cut(s) 318, 747, 1145, 1710
BseNI ACTGG 3 cut(s) 157, 178, 1551
BseRI GAGGAG 3 cut(s) 23, 1270, 1316
BseSI GKGCMC 1 cut(s) 1108
BseXI GCAGC 2 cut(s) 1436, 1540
BshTI ACCGGT 1 cut(s) 62
BsiHKAI GWGCWC 2 cut(s) 87, 1108
BsiSI CCGG 1 cut(s) 63
BslFI GGGAC 1 cut(s) 1448
BslI CCNNNNNNNGG 1 cut(s) 1405
BsmAI GTCTC 4 cut(s) 299, 365, 665, 757
BsmFI GGGAC 1 cut(s) 1448
BsmI GAATGC 3 cut(s) 958, 1022, 1352
Bsp1286I GDGCHC 2 cut(s) 87, 1108
Bsp143I GATC 3 cut(s) 1127, 1635, 1753
BspACI CCGC 2 cut(s) 505, 919
BspCNI CTCAG 4 cut(s) 319, 748, 1144, 1711
BspHI TCATGA 1 cut(s) 394
BspLI GGNNCC 2 cut(s) 1436, 1628
BspMI ACCTGC 1 cut(s) 1262
BspPI GGATC 2 cut(s) 1135, 1748
BspQI GCTCTTC 2 cut(s) 416, 1527
BsrDI GCAATG 1 cut(s) 1224
BsrFI RCCGGY 1 cut(s) 62
BsrI ACTGG 3 cut(s) 157, 178, 1551
BssAI RCCGGY 1 cut(s) 62
BssECI CCNNGG 3 cut(s) 354, 1073, 1400
BssMI GATC 3 cut(s) 1127, 1635, 1753
BssT1I CCWWGG 3 cut(s) 354, 1073, 1400
Bst4CI ACNGT 2 cut(s) 89, 1623
Bst6I CTCTTC 6 cut(s) 107, 401, 416, 548, 707, 1527
BstBAI YACGTR 1 cut(s) 1441
BstDEI CTNAG 7 cut(s) 6, 42, 327, 756, 1131, 1340, 1719
BstF5I GGATG 7 cut(s) 148, 337, 514, 1299, 1395, 1410, 1555
BstKTI GATC 3 cut(s) 1130, 1638, 1756
BstMAI GTCTC 4 cut(s) 299, 365, 665, 757
BstMBI GATC 3 cut(s) 1127, 1635, 1753
BstMWI GCNNNNNNNGC 2 cut(s) 269, 1234
BstNSI RCATGY 1 cut(s) 1241
BstSFI CTRYAG 1 cut(s) 1519
BstSLI GKGCMC 1 cut(s) 1108
BstV1I GCAGC 2 cut(s) 1436, 1540
BstV2I GAAGAC 1 cut(s) 795
BstX2I RGATCY 1 cut(s) 1127
BstYI RGATCY 1 cut(s) 1127
BtsCI GGATG 7 cut(s) 148, 337, 514, 1299, 1395, 1410, 1555
BveI ACCTGC 1 cut(s) 1262
CaiI CAGNNNCTG 1 cut(s) 674
CciI TCATGA 1 cut(s) 394
Cfr10I RCCGGY 1 cut(s) 62
Cfr13I GGNCC 1 cut(s) 1435
CseI GACGC 3 cut(s) 47, 713, 1256
Csp6I GTAC 2 cut(s) 1421, 1652
CspAI ACCGGT 1 cut(s) 62
CspCI CAANNNNNGTGG 2 cut(s) 1427, 1462
CviAII CATG 4 cut(s) 395, 980, 1238, 1376
CviQI GTAC 2 cut(s) 1421, 1652
DdeI CTNAG 7 cut(s) 6, 42, 327, 756, 1131, 1340, 1719
DpnI GATC 3 cut(s) 1129, 1637, 1755
DpnII GATC 3 cut(s) 1127, 1635, 1753
Eam1104I CTCTTC 6 cut(s) 107, 401, 416, 548, 707, 1527
EarI CTCTTC 6 cut(s) 107, 401, 416, 548, 707, 1527
Eco130I CCWWGG 3 cut(s) 354, 1073, 1400
Eco32I GATATC 2 cut(s) 604, 1476
Eco47I GGWCC 1 cut(s) 1435
Eco57I CTGAAG 6 cut(s) 75, 279, 408, 549, 696, 783
Eco72I CACGTG 1 cut(s) 1441
EcoRI GAATTC 1 cut(s) 71
EcoRV GATATC 2 cut(s) 604, 1476
EcoT14I CCWWGG 3 cut(s) 354, 1073, 1400
ErhI CCWWGG 3 cut(s) 354, 1073, 1400
FaeI CATG 4 cut(s) 398, 983, 1241, 1379
FaqI GGGAC 1 cut(s) 1448
FatI CATG 4 cut(s) 394, 979, 1237, 1375
FauI CCCGC 1 cut(s) 498
FbaI TGATCA 1 cut(s) 1635
Fnu4HI GCNGC 2 cut(s) 1450, 1554
FokI GGATG 7 cut(s) 155, 344, 521, 1306, 1382, 1417, 1562
Fsp4HI GCNGC 2 cut(s) 1450, 1554
FspBI CTAG 2 cut(s) 194, 855
GluI GCNGC 2 cut(s) 1450, 1554
GsuI CTGGAG 1 cut(s) 174
HapII CCGG 1 cut(s) 63
HgaI GACGC 3 cut(s) 47, 713, 1256
Hin1II CATG 4 cut(s) 398, 983, 1241, 1379
HincII GTYRAC 1 cut(s) 1330
HindII GTYRAC 1 cut(s) 1330
HindIII AAGCTT 1 cut(s) 1608
HinfI GANTC 9 cut(s) 50, 254, 317, 383, 434, 587, 614, 665, 1594
HpaII CCGG 1 cut(s) 63
HphI GGTGA 7 cut(s) 77, 209, 455, 562, 835, 919, 1470
Hpy166II GTNNAC 3 cut(s) 924, 1106, 1330
Hpy188III TCNNGA 3 cut(s) 395, 1598, 1757
Hpy8I GTNNAC 3 cut(s) 924, 1106, 1330
Hpy99I CGWCG 2 cut(s) 1421, 1568
HpyAV CCTTC 3 cut(s) 91, 711, 863
HpyCH4III ACNGT 2 cut(s) 89, 1623
HpyCH4IV ACGT 3 cut(s) 1419, 1440, 1509
HpyCH4V TGCA 5 cut(s) 1020, 1106, 1211, 1217, 1673
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 1234
HpyF3I CTNAG 7 cut(s) 6, 42, 327, 756, 1131, 1340, 1719
HpySE526I ACGT 3 cut(s) 1419, 1440, 1509
Hsp92II CATG 4 cut(s) 398, 983, 1241, 1379
Ksp22I TGATCA 1 cut(s) 1635
Kzo9I GATC 3 cut(s) 1127, 1635, 1753
LguI GCTCTTC 2 cut(s) 416, 1527
LmnI GCTCC 2 cut(s) 473, 524
Lsp1109I GCAGC 2 cut(s) 1436, 1540
LweI GCATC 3 cut(s) 259, 1204, 1540
MaeI CTAG 2 cut(s) 194, 855
MaeII ACGT 3 cut(s) 1419, 1440, 1509
MaeIII GTNAC 2 cut(s) 35, 1441
MalI GATC 3 cut(s) 1129, 1637, 1755
MboI GATC 3 cut(s) 1127, 1635, 1753
MflI RGATCY 1 cut(s) 1127
MhlI GDGCHC 2 cut(s) 87, 1108
MluCI AATT 3 cut(s) 71, 607, 1056
MlyI GAGTC 1 cut(s) 608
MmeI TCCRAC 1 cut(s) 1028
MroXI GAANNNNTTC 1 cut(s) 1352
MseI TTAA 4 cut(s) 216, 900, 1038, 1765
MslI CAYNNNNRTG 2 cut(s) 399, 1191
MspI CCGG 1 cut(s) 63
Mva1269I GAATGC 3 cut(s) 958, 1022, 1352
MwoI GCNNNNNNNGC 2 cut(s) 269, 1234
NdeII GATC 3 cut(s) 1127, 1635, 1753
NlaIII CATG 4 cut(s) 398, 983, 1241, 1379
NlaIV GGNNCC 2 cut(s) 1436, 1628
NmuCI GTSAC 2 cut(s) 35, 1441
NspI RCATGY 1 cut(s) 1241
PagI TCATGA 1 cut(s) 394
PciSI GCTCTTC 2 cut(s) 416, 1527
PctI GAATGC 3 cut(s) 958, 1022, 1352
PdmI GAANNNNTTC 1 cut(s) 1352
PfeI GAWTC 8 cut(s) 50, 254, 317, 383, 434, 587, 665, 1594
PflFI GACNNNGTC 1 cut(s) 1325
PinAI ACCGGT 1 cut(s) 62
PkrI GCNGC 2 cut(s) 1451, 1555
PleI GAGTC 1 cut(s) 608
PmaCI CACGTG 1 cut(s) 1441
PmlI CACGTG 1 cut(s) 1441
PpsI GAGTC 1 cut(s) 608
Ppu21I YACGTR 1 cut(s) 1441
PsiI TTATAA 1 cut(s) 1086
Psp1406I AACGTT 1 cut(s) 1509
PspCI CACGTG 1 cut(s) 1441
PspN4I GGNNCC 2 cut(s) 1436, 1628
PspPI GGNCC 1 cut(s) 1435
PstNI CAGNNNCTG 1 cut(s) 674
PsuI RGATCY 1 cut(s) 1127
PsyI GACNNNGTC 1 cut(s) 1325
RsaI GTAC 2 cut(s) 1422, 1653
RsaNI GTAC 2 cut(s) 1421, 1652
RseI CAYNNNNRTG 2 cut(s) 399, 1191
SapI GCTCTTC 2 cut(s) 416, 1527
SaqAI TTAA 4 cut(s) 216, 900, 1038, 1765
SatI GCNGC 2 cut(s) 1450, 1554
Sau3AI GATC 3 cut(s) 1127, 1635, 1753
Sau96I GGNCC 1 cut(s) 1435
SchI GAGTC 1 cut(s) 608
SduI GDGCHC 2 cut(s) 87, 1108
SfaNI GCATC 3 cut(s) 259, 1204, 1540
SfcI CTRYAG 1 cut(s) 1519
SinI GGWCC 1 cut(s) 1435
SmiMI CAYNNNNRTG 2 cut(s) 399, 1191
Sse9I AATT 3 cut(s) 71, 607, 1056
SsiI CCGC 2 cut(s) 505, 919
SspMI CTAG 2 cut(s) 194, 855
StyI CCWWGG 3 cut(s) 354, 1073, 1400
TaaI ACNGT 2 cut(s) 89, 1623
TaiI ACGT 3 cut(s) 1422, 1443, 1512
TaqI TCGA 5 cut(s) 233, 287, 1563, 1597, 1661
TasI AATT 3 cut(s) 71, 607, 1056
TfiI GAWTC 8 cut(s) 50, 254, 317, 383, 434, 587, 665, 1594
Tru1I TTAA 4 cut(s) 216, 900, 1038, 1765
Tru9I TTAA 4 cut(s) 216, 900, 1038, 1765
TseFI GTSAC 2 cut(s) 35, 1441
TseI GCWGC 2 cut(s) 1449, 1553
Tsp45I GTSAC 2 cut(s) 35, 1441
TspDTI ATGAA 7 cut(s) 64, 110, 801, 882, 903, 1361, 1631
TspGWI ACGGA 1 cut(s) 890
Tth111I GACNNNGTC 1 cut(s) 1325
VneI GTGCAC 1 cut(s) 1104
VpaK11BI GGWCC 1 cut(s) 1435
XapI RAATTY 1 cut(s) 71
XceI RCATGY 1 cut(s) 1241
XmnI GAANNNNTTC 1 cut(s) 1352
XspI CTAG 2 cut(s) 194, 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.