Rroxscaffold_4G00303270
MYB Family

At2g29880-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
23655065 .. 23664169
9105 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00303270.1

Sequence Viewer

Length: 342 bp
ATGAAAGAAATCTTCCACAATATTTTCTTTCTAAAATACCTATCTAATGATATATTTTTATTGAACGTGACATCCAACGCATGGGCACTTTCGGTCGAAACTTTTCCGGACTATGAGGACTTGAAAATTGCAGTTGGAAATGGAACTGCAACTGGAATGGGCTCAATCAGTCTAGGTGATGATACAGATGCAACAACATTTGTATTAATGGCAATACAAGCAGTGAAGGCTCCTCTGCCTCTGGAATTTGATAAAGTTAGAGACGAATGCATGAGATTTGGTAAAGCTATTGCTATAGTTGCTATTGCCAATGCCATCCTCACTGTCTCAAACACCGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

113

Amino Acids

12.26

Weight (kDa)

4.58

Isoelectric Point (pI)

20.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0031047)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000168.1_g000016
rosa_roxburghii Rroxscaffold_4G00303270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 81
AccIII TCCGGA 1 cut(s) 106
AcsI RAATTY 1 cut(s) 245
AfiI CCNNNNNNNGG 1 cut(s) 81
AgsI TTSAA 2 cut(s) 64, 124
AloI GAACNNNNNNTCC 2 cut(s) 56, 88
AluBI AGCT 1 cut(s) 287
AluI AGCT 1 cut(s) 287
Alw26I GTCTC 2 cut(s) 255, 331
Aor13HI TCCGGA 1 cut(s) 106
ApoI RAATTY 1 cut(s) 245
AseI ATTAAT 1 cut(s) 206
Asp700I GAANNNNTTC 1 cut(s) 102
AsuHPI GGTGA 1 cut(s) 188
BaeGI GKGCMC 1 cut(s) 88
BanII GRGCYC 1 cut(s) 164
BccI CCATC 1 cut(s) 323
BcoDI GTCTC 2 cut(s) 255, 331
BfaI CTAG 1 cut(s) 173
BfmI CTRYAG 1 cut(s) 294
BmiI GGNNCC 1 cut(s) 231
BmsI GCATC 1 cut(s) 178
BsaWI WCCGGW 2 cut(s) 106, 335
Bsc4I CCNNNNNNNGG 1 cut(s) 81
Bse1I ACTGG 1 cut(s) 157
BseAI TCCGGA 1 cut(s) 106
BseGI GGATG 2 cut(s) 71, 315
BseLI CCNNNNNNNGG 1 cut(s) 81
BseNI ACTGG 1 cut(s) 157
BseRI GAGGAG 1 cut(s) 222
BseSI GKGCMC 1 cut(s) 88
Bsh1285I CGRYCG 1 cut(s) 96
BsiEI CGRYCG 1 cut(s) 96
BsiSI CCGG 2 cut(s) 107, 336
BslI CCNNNNNNNGG 1 cut(s) 81
BsmAI GTCTC 2 cut(s) 255, 331
BsmBI CGTCTC 1 cut(s) 255
BsmI GAATGC 1 cut(s) 272
Bsp1286I GDGCHC 2 cut(s) 88, 164
Bsp13I TCCGGA 1 cut(s) 106
BspEI TCCGGA 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 231
BsrI ACTGG 1 cut(s) 157
Bst4CI ACNGT 1 cut(s) 325
BstF5I GGATG 2 cut(s) 71, 315
BstMAI GTCTC 2 cut(s) 255, 331
BstMCI CGRYCG 1 cut(s) 96
BstMWI GCNNNNNNNGC 3 cut(s) 218, 227, 299
BstSFI CTRYAG 1 cut(s) 294
BstSLI GKGCMC 1 cut(s) 88
BtsCI GGATG 2 cut(s) 71, 315
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 2 cut(s) 228, 321
CviAII CATG 2 cut(s) 81, 271
CviJI RGCY 3 cut(s) 162, 230, 287
CviKI_1 RGCY 3 cut(s) 162, 230, 287
Eco24I GRGCYC 1 cut(s) 164
EcoT22I ATGCAT 1 cut(s) 272
EcoT38I GRGCYC 1 cut(s) 164
Esp3I CGTCTC 1 cut(s) 255
FaeI CATG 2 cut(s) 84, 274
FaiI YATR 5 cut(s) 53, 82, 114, 272, 296
FatI CATG 2 cut(s) 80, 270
FokI GGATG 2 cut(s) 58, 302
FriOI GRGCYC 1 cut(s) 164
FspBI CTAG 1 cut(s) 173
HapII CCGG 2 cut(s) 107, 336
Hin1II CATG 2 cut(s) 84, 274
HpaII CCGG 2 cut(s) 107, 336
HphI GGTGA 1 cut(s) 188
Hpy188III TCNNGA 2 cut(s) 107, 242
HpyAV CCTTC 1 cut(s) 220
HpyCH4III ACNGT 1 cut(s) 325
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 4 cut(s) 131, 149, 191, 270
HpyF10VI GCNNNNNNNGC 3 cut(s) 218, 227, 299
HpySE526I ACGT 1 cut(s) 66
Hsp92II CATG 2 cut(s) 84, 274
Kpn2I TCCGGA 1 cut(s) 106
LmnI GCTCC 1 cut(s) 235
LpnPI CCDG 3 cut(s) 120, 138, 227
LweI GCATC 1 cut(s) 178
MaeI CTAG 1 cut(s) 173
MaeII ACGT 1 cut(s) 66
MaeIII GTNAC 1 cut(s) 67
MboII GAAGA 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 88, 164
MluCI AATT 2 cut(s) 126, 245
MmeI TCCRAC 2 cut(s) 99, 115
MnlI CCTC 4 cut(s) 109, 243, 249, 329
Mph1103I ATGCAT 1 cut(s) 272
MroI TCCGGA 1 cut(s) 106
MroXI GAANNNNTTC 1 cut(s) 102
MseI TTAA 1 cut(s) 206
MspI CCGG 2 cut(s) 107, 336
Mva1269I GAATGC 1 cut(s) 272
MwoI GCNNNNNNNGC 3 cut(s) 218, 227, 299
NlaIII CATG 2 cut(s) 84, 274
NlaIV GGNNCC 1 cut(s) 231
NmuCI GTSAC 1 cut(s) 67
NsiI ATGCAT 1 cut(s) 272
PctI GAATGC 1 cut(s) 272
PdmI GAANNNNTTC 1 cut(s) 102
PflMI CCANNNNNTGG 1 cut(s) 81
PshBI ATTAAT 1 cut(s) 206
PspN4I GGNNCC 1 cut(s) 231
SaqAI TTAA 1 cut(s) 206
SduI GDGCHC 2 cut(s) 88, 164
SetI ASST 4 cut(s) 42, 69, 178, 289
SfaNI GCATC 1 cut(s) 178
SfcI CTRYAG 1 cut(s) 294
SgeI CNNG 9 cut(s) 79, 93, 119, 133, 165, 185, 230, 254, 283
Sse9I AATT 2 cut(s) 126, 245
SspI AATATT 1 cut(s) 22
SspMI CTAG 1 cut(s) 173
TaaI ACNGT 1 cut(s) 325
TaiI ACGT 1 cut(s) 69
TaqI TCGA 1 cut(s) 96
TaqII GACCGA 1 cut(s) 82
TasI AATT 2 cut(s) 126, 245
Tru1I TTAA 1 cut(s) 206
Tru9I TTAA 1 cut(s) 206
TscAI CASTG 2 cut(s) 228, 328
TseFI GTSAC 1 cut(s) 67
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 228, 328
Van91I CCANNNNNTGG 1 cut(s) 81
VspI ATTAAT 1 cut(s) 206
XapI RAATTY 1 cut(s) 245
XmnI GAANNNNTTC 1 cut(s) 102
XspI CTAG 1 cut(s) 173
Zsp2I ATGCAT 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.