Rmu_sc0000168.1_g000016

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000168.1
Physical Location & Seq
Forward (+)
64624 .. 65721
1098 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000168.1_g000016.1.cds

Sequence Viewer

Length: 276 bp
atgaaggaggtcttcaccctctgcgacaccgacaccgacaccgacaccgacaacgatgacaagatcacccctactgaattggaaatcctaatgcgagcagagccatcagcaagactaaacccagtaatatttaaacaatgggttcttcttcttgtgcagaaggctcctctgcctctggcatttgataaagttagagacaaatgcatgggatttggtaaagctattgttataactgctattgccaatgccatcctcactgtctcaaacaccggataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.05

Weight (kDa)

4.73

Isoelectric Point (pI)

19.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0031047)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000168.1_g000016
rosa_roxburghii Rroxscaffold_4G00303270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 230
AluBI AGCT 1 cut(s) 221
AluI AGCT 1 cut(s) 221
Alw26I GTCTC 2 cut(s) 189, 265
AsuHPI GGTGA 2 cut(s) 7, 58
BbsI GAAGAC 1 cut(s) 4
BccI CCATC 2 cut(s) 112, 257
BcoDI GTCTC 2 cut(s) 189, 265
BmiI GGNNCC 1 cut(s) 165
BmrI ACTGGG 1 cut(s) 116
BmuI ACTGGG 1 cut(s) 116
BpiI GAAGAC 1 cut(s) 4
BsaWI WCCGGW 1 cut(s) 269
Bse1I ACTGG 1 cut(s) 122
BseGI GGATG 1 cut(s) 249
BseNI ACTGG 1 cut(s) 122
BseRI GAGGAG 1 cut(s) 156
BsgI GTGCAG 1 cut(s) 176
BsiSI CCGG 1 cut(s) 270
BsmAI GTCTC 2 cut(s) 189, 265
Bsp143I GATC 1 cut(s) 63
BspLI GGNNCC 1 cut(s) 165
BsrI ACTGG 1 cut(s) 122
BssMI GATC 1 cut(s) 63
Bst4CI ACNGT 1 cut(s) 259
BstC8I GCNNGC 1 cut(s) 96
BstF5I GGATG 1 cut(s) 249
BstKTI GATC 1 cut(s) 66
BstMAI GTCTC 2 cut(s) 189, 265
BstMBI GATC 1 cut(s) 63
BstMWI GCNNNNNNNGC 1 cut(s) 100
BstV2I GAAGAC 1 cut(s) 4
BtsCI GGATG 1 cut(s) 249
BtsIMutI CAGTG 1 cut(s) 255
Cac8I GCNNGC 1 cut(s) 96
CviAII CATG 1 cut(s) 205
CviJI RGCY 3 cut(s) 103, 164, 221
CviKI_1 RGCY 3 cut(s) 103, 164, 221
DpnI GATC 1 cut(s) 65
DpnII GATC 1 cut(s) 63
DraI TTTAAA 1 cut(s) 133
EcoT22I ATGCAT 1 cut(s) 206
FaeI CATG 1 cut(s) 208
FaiI YATR 2 cut(s) 206, 230
FalI AAGNNNNNCTT 1 cut(s) 28
FatI CATG 1 cut(s) 204
FokI GGATG 1 cut(s) 236
HapII CCGG 1 cut(s) 270
Hin1II CATG 1 cut(s) 208
HpaII CCGG 1 cut(s) 270
HphI GGTGA 2 cut(s) 7, 58
HpyAV CCTTC 1 cut(s) 154
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4V TGCA 2 cut(s) 157, 204
HpyF10VI GCNNNNNNNGC 1 cut(s) 100
Hsp92II CATG 1 cut(s) 208
Kzo9I GATC 1 cut(s) 63
LmnI GCTCC 1 cut(s) 169
LpnPI CCDG 2 cut(s) 135, 161
MalI GATC 1 cut(s) 65
MboI GATC 1 cut(s) 63
MboII GAAGA 3 cut(s) 4, 137, 140
MluCI AATT 1 cut(s) 77
MnlI CCTC 4 cut(s) 29, 177, 183, 263
Mph1103I ATGCAT 1 cut(s) 206
MseI TTAA 1 cut(s) 132
MspI CCGG 1 cut(s) 270
MwoI GCNNNNNNNGC 1 cut(s) 100
NdeII GATC 1 cut(s) 63
NlaIII CATG 1 cut(s) 208
NlaIV GGNNCC 1 cut(s) 165
NsiI ATGCAT 1 cut(s) 206
PsiI TTATAA 1 cut(s) 230
PspN4I GGNNCC 1 cut(s) 165
SaqAI TTAA 1 cut(s) 132
Sau3AI GATC 1 cut(s) 63
SetI ASST 2 cut(s) 12, 223
SgeI CNNG 7 cut(s) 73, 107, 123, 134, 164, 188, 217
Sse9I AATT 1 cut(s) 77
SspI AATATT 1 cut(s) 129
TaaI ACNGT 1 cut(s) 259
TasI AATT 1 cut(s) 77
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TscAI CASTG 1 cut(s) 262
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 262
Zsp2I ATGCAT 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.