Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0029282

Physical Location & Seq

Genomic Coordinates Reverse (-)

74483369 .. 74495956

Gene Structure 12588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00053550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGCTTCCAAAGGTCCAAGGCCGAAGCTCGATCACGAACCCAGACCCAAGCGCCACAAGGCCCTTGAAGTTGCGAATGAACCTCGACGGCCAAAAGCTCATTGGGACCATGTTTTAGAAGAGATGATCTGGCTGTCAAAGGACTTTGAGTCGGAGAGAAAATGGAAATTGGCTCAGGCAAAGAAGGTTGCTTTACGAGCCAGCAAGGGCATGCTAGATCAGGCTACAAGGGGGAAAAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0010035 GO:0010038 GO:0016514 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0070013 GO:0070603 GO:0071944 GO:0098542 GO:1902494 GO:1904949

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSA Helicase_C Myb_DNA-bind_6 SNF2_N

Protein Analysis

81

Amino Acids

9.52

Weight (kDa)

10.48

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSA	PF07529	27 - 64	4.8e-15	HSA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0029282)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g20820
rosa_roxburghii	Rroxscaffold_1G00053550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	89
AgsI	TTSAA	1 cut(s)	68
AhdI	GACNNNNNGTC	1 cut(s)	148
AluBI	AGCT	2 cut(s)	28, 98
AluI	AGCT	2 cut(s)	28, 98
AoxI	GGCC	3 cut(s)	20, 60, 89
AspLEI	GCGC	1 cut(s)	54
AspS9I	GGNCC	3 cut(s)	14, 61, 106
AvaII	GGWCC	2 cut(s)	14, 106
BceAI	ACGGC	1 cut(s)	104
BfaI	CTAG	1 cut(s)	215
BfoI	RGCGCY	1 cut(s)	55
Bme18I	GGWCC	2 cut(s)	14, 106
BmeRI	GACNNNNNGTC	1 cut(s)	148
BmgT120I	GGNCC	3 cut(s)	14, 61, 106
BmiI	GGNNCC	1 cut(s)	107
Bpu10I	CCTNAGC	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	17
BseMII	CTCAG	1 cut(s)	188
BshFI	GGCC	3 cut(s)	22, 62, 91
BslFI	GGGAC	1 cut(s)	119
BsmFI	GGGAC	1 cut(s)	119
BsnI	GGCC	3 cut(s)	22, 62, 91
Bsp143I	GATC	3 cut(s)	31, 126, 217
BspANI	GGCC	3 cut(s)	22, 62, 91
BspCNI	CTCAG	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	107
BssECI	CCNNGG	1 cut(s)	17
BssMI	GATC	3 cut(s)	31, 126, 217
BssT1I	CCWWGG	1 cut(s)	17
Bst6I	CTCTTC	1 cut(s)	114
BstC8I	GCNNGC	2 cut(s)	202, 212
BstDEI	CTNAG	1 cut(s)	174
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	3 cut(s)	34, 129, 220
BstMBI	GATC	3 cut(s)	31, 126, 217
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNSI	RCATGY	1 cut(s)	214
BsuRI	GGCC	3 cut(s)	22, 62, 91
Cac8I	GCNNGC	2 cut(s)	202, 212
CfoI	GCGC	1 cut(s)	54
Cfr13I	GGNCC	3 cut(s)	14, 61, 106
CviAII	CATG	2 cut(s)	110, 211
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	3 cut(s)	33, 128, 219
DpnII	GATC	3 cut(s)	31, 126, 217
DriI	GACNNNNNGTC	1 cut(s)	148
EaeI	YGGCCR	1 cut(s)	89
Eam1104I	CTCTTC	1 cut(s)	114
Eam1105I	GACNNNNNGTC	1 cut(s)	148
EarI	CTCTTC	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	17
Eco47I	GGWCC	2 cut(s)	14, 106
EcoO109I	RGGNCCY	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	17
ErhI	CCWWGG	1 cut(s)	17
FaeI	CATG	2 cut(s)	113, 214
FaiI	YATR	2 cut(s)	111, 212
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	2 cut(s)	109, 210
FspBI	CTAG	1 cut(s)	215
GlaI	GCGC	1 cut(s)	53
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	3 cut(s)	22, 62, 91
HhaI	GCGC	1 cut(s)	54
Hin1II	CATG	2 cut(s)	113, 214
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HinfI	GANTC	1 cut(s)	149
Hpy188I	TCNGA	1 cut(s)	154
Hpy188III	TCNNGA	1 cut(s)	35
Hpy99I	CGWCG	1 cut(s)	90
HpyAV	CCTTC	1 cut(s)	178
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	1 cut(s)	174
Hsp92II	CATG	2 cut(s)	113, 214
HspAI	GCGC	1 cut(s)	52
Kzo9I	GATC	3 cut(s)	31, 126, 217
LpnPI	CCDG	5 cut(s)	55, 115, 161, 206, 214
MaeI	CTAG	1 cut(s)	215
MalI	GATC	3 cut(s)	33, 128, 219
MboI	GATC	3 cut(s)	31, 126, 217
MboII	GAAGA	1 cut(s)	131
MluCI	AATT	1 cut(s)	167
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	1 cut(s)	93
MwoI	GCNNNNNNNGC	1 cut(s)	197
NdeII	GATC	3 cut(s)	31, 126, 217
NlaIII	CATG	2 cut(s)	113, 214
NlaIV	GGNNCC	1 cut(s)	107
NspI	RCATGY	1 cut(s)	214
PaeI	GCATGC	1 cut(s)	214
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
PspN4I	GGNNCC	1 cut(s)	107
PspPI	GGNCC	3 cut(s)	14, 61, 106
Sau3AI	GATC	3 cut(s)	31, 126, 217
Sau96I	GGNCC	3 cut(s)	14, 61, 106
SchI	GAGTC	1 cut(s)	158
SetI	ASST	5 cut(s)	16, 30, 85, 100, 189
SinI	GGWCC	2 cut(s)	14, 106
SphI	GCATGC	1 cut(s)	214
Sse9I	AATT	1 cut(s)	167
SspMI	CTAG	1 cut(s)	215
StyI	CCWWGG	1 cut(s)	17
TaqI	TCGA	2 cut(s)	30, 85
TasI	AATT	1 cut(s)	167
TspDTI	ATGAA	1 cut(s)	93
VpaK11BI	GGWCC	2 cut(s)	14, 106
XceI	RCATGY	1 cut(s)	214
XcmI	CCANNNNNNNNNTGG	1 cut(s)	99
XspI	CTAG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.