Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0029282

Physical Location & Seq

Genomic Coordinates Reverse (-)

23559358 .. 23562383

Gene Structure 3026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g20820.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGCTTCCAAAGGTCCAAGGTCCAAGCTTGATCATGAACCCAGAGCCAAGCGCCAAAAGGCCCTTGAAGCTGCAATTGAACCTCATCGGCCAAAAGCTCATTGGGATCATGTTGCTTTAAGATCGAGCAAGGGCATGCTAGATCAGGCTACAAGGGGAGAAAAGAAATTGAGGGAGGAAGAGCAACGGATAAAGAAGATTGCACTCAATATATCCAAGGATGTGAATAAATTCTGGCTGAAAATAGAAAAGCTGGTACTCAACAATGTTGGCAGACAATCTTGGGGACAGCTACAAGCCTTTTCAGCAATATCCTACACAAGATCAGCCAAGTATCCAATGCAAAGAAATGGACAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0010035 GO:0010038 GO:0016514 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0070013 GO:0070603 GO:0071944 GO:0098542 GO:1902494 GO:1904949

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSA Helicase_C Myb_DNA-bind_6 SNF2_N

Protein Analysis

121

Amino Acids

13.87

Weight (kDa)

10.5

Isoelectric Point (pI)

52.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029282)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g20820
rosa_roxburghii	Rroxscaffold_1G00053550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	114
AcoI	YGGCCR	1 cut(s)	89
AcsI	RAATTY	1 cut(s)	230
AfaI	GTAC	1 cut(s)	258
AgsI	TTSAA	2 cut(s)	68, 80
AluBI	AGCT	5 cut(s)	28, 71, 98, 253, 292
AluI	AGCT	5 cut(s)	28, 71, 98, 253, 292
AlwI	GGATC	1 cut(s)	114
AoxI	GGCC	2 cut(s)	60, 89
ApeKI	GCWGC	1 cut(s)	71
ApoI	RAATTY	1 cut(s)	230
Asp700I	GAANNNNTTC	1 cut(s)	230
AspLEI	GCGC	1 cut(s)	54
AspS9I	GGNCC	3 cut(s)	14, 21, 61
AvaII	GGWCC	2 cut(s)	14, 21
BbvI	GCAGC	1 cut(s)	58
BciVI	GTATCC	1 cut(s)	345
BclI	TGATCA	1 cut(s)	31
BfaI	CTAG	1 cut(s)	140
BfoI	RGCGCY	1 cut(s)	55
BfuI	GTATCC	1 cut(s)	345
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
Bme18I	GGWCC	2 cut(s)	14, 21
BmgT120I	GGNCC	3 cut(s)	14, 21, 61
BsaJI	CCNNGG	2 cut(s)	17, 216
BseDI	CCNNGG	2 cut(s)	17, 216
BseGI	GGATG	1 cut(s)	226
BseXI	GCAGC	1 cut(s)	58
BshFI	GGCC	2 cut(s)	62, 91
BslFI	GGGAC	1 cut(s)	300
BsmFI	GGGAC	1 cut(s)	300
BsnI	GGCC	2 cut(s)	62, 91
Bsp143I	GATC	5 cut(s)	31, 106, 122, 142, 323
BspANI	GGCC	2 cut(s)	62, 91
BspHI	TCATGA	1 cut(s)	34
BspPI	GGATC	1 cut(s)	114
BspQI	GCTCTTC	1 cut(s)	174
BssECI	CCNNGG	2 cut(s)	17, 216
BssMI	GATC	5 cut(s)	31, 106, 122, 142, 323
BssT1I	CCWWGG	2 cut(s)	17, 216
Bst6I	CTCTTC	1 cut(s)	174
BstC8I	GCNNGC	1 cut(s)	137
BstF5I	GGATG	1 cut(s)	226
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	5 cut(s)	34, 109, 125, 145, 326
BstMBI	GATC	5 cut(s)	31, 106, 122, 142, 323
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 305
BstNSI	RCATGY	1 cut(s)	139
BstV1I	GCAGC	1 cut(s)	58
BsuI	GTATCC	1 cut(s)	345
BsuRI	GGCC	2 cut(s)	62, 91
BtsCI	GGATG	1 cut(s)	226
Cac8I	GCNNGC	1 cut(s)	137
CciI	TCATGA	1 cut(s)	34
CfoI	GCGC	1 cut(s)	54
Cfr13I	GGNCC	3 cut(s)	14, 21, 61
Csp6I	GTAC	1 cut(s)	257
CviAII	CATG	3 cut(s)	35, 110, 136
CviQI	GTAC	1 cut(s)	257
DpnI	GATC	5 cut(s)	33, 108, 124, 144, 325
DpnII	GATC	5 cut(s)	31, 106, 122, 142, 323
EaeI	YGGCCR	1 cut(s)	89
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Eco130I	CCWWGG	2 cut(s)	17, 216
Eco47I	GGWCC	2 cut(s)	14, 21
EcoO109I	RGGNCCY	1 cut(s)	61
EcoT14I	CCWWGG	2 cut(s)	17, 216
ErhI	CCWWGG	2 cut(s)	17, 216
FaeI	CATG	3 cut(s)	38, 113, 139
FaiI	YATR	4 cut(s)	36, 111, 137, 212
FaqI	GGGAC	1 cut(s)	300
FatI	CATG	3 cut(s)	34, 109, 135
FbaI	TGATCA	1 cut(s)	31
Fnu4HI	GCNGC	1 cut(s)	72
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	1 cut(s)	72
FspBI	CTAG	1 cut(s)	140
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	1 cut(s)	72
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	2 cut(s)	62, 91
HhaI	GCGC	1 cut(s)	54
Hin1II	CATG	3 cut(s)	38, 113, 139
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HindIII	AAGCTT	1 cut(s)	26
Hpy188III	TCNNGA	1 cut(s)	35
HpyCH4V	TGCA	3 cut(s)	74, 203, 343
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 305
Hsp92II	CATG	3 cut(s)	38, 113, 139
HspAI	GCGC	1 cut(s)	52
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	5 cut(s)	31, 106, 122, 142, 323
LguI	GCTCTTC	1 cut(s)	174
LpnPI	CCDG	4 cut(s)	55, 131, 220, 239
Lsp1109I	GCAGC	1 cut(s)	58
MaeI	CTAG	1 cut(s)	140
MalI	GATC	5 cut(s)	33, 108, 124, 144, 325
MboI	GATC	5 cut(s)	31, 106, 122, 142, 323
MboII	GAAGA	2 cut(s)	191, 208
MfeI	CAATTG	1 cut(s)	75
MluCI	AATT	3 cut(s)	75, 167, 230
MnlI	CCTC	3 cut(s)	93, 165, 169
MroXI	GAANNNNTTC	1 cut(s)	230
MseI	TTAA	1 cut(s)	119
MunI	CAATTG	1 cut(s)	75
MwoI	GCNNNNNNNGC	2 cut(s)	68, 305
NdeII	GATC	5 cut(s)	31, 106, 122, 142, 323
NlaIII	CATG	3 cut(s)	38, 113, 139
NspI	RCATGY	1 cut(s)	139
PaeI	GCATGC	1 cut(s)	139
PagI	TCATGA	1 cut(s)	34
PciSI	GCTCTTC	1 cut(s)	174
PdmI	GAANNNNTTC	1 cut(s)	230
PkrI	GCNGC	1 cut(s)	73
PspPI	GGNCC	3 cut(s)	14, 21, 61
RsaI	GTAC	1 cut(s)	258
RsaNI	GTAC	1 cut(s)	257
SapI	GCTCTTC	1 cut(s)	174
SaqAI	TTAA	1 cut(s)	119
SatI	GCNGC	1 cut(s)	72
Sau3AI	GATC	5 cut(s)	31, 106, 122, 142, 323
Sau96I	GGNCC	3 cut(s)	14, 21, 61
SetI	ASST	8 cut(s)	16, 23, 30, 73, 85, 100, 255, 294
SinI	GGWCC	2 cut(s)	14, 21
SphI	GCATGC	1 cut(s)	139
Sse9I	AATT	3 cut(s)	75, 167, 230
SspMI	CTAG	1 cut(s)	140
StyI	CCWWGG	2 cut(s)	17, 216
TaqI	TCGA	1 cut(s)	125
TasI	AATT	3 cut(s)	75, 167, 230
Tru1I	TTAA	1 cut(s)	119
Tru9I	TTAA	1 cut(s)	119
TseI	GCWGC	1 cut(s)	71
TspDTI	ATGAA	1 cut(s)	51
TspGWI	ACGGA	1 cut(s)	202
VpaK11BI	GGWCC	2 cut(s)	14, 21
XapI	RAATTY	1 cut(s)	230
XceI	RCATGY	1 cut(s)	139
XcmI	CCANNNNNNNNNTGG	1 cut(s)	99
XmnI	GAANNNNTTC	1 cut(s)	230
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.