Rroxscaffold_1G00025780
MYB Family

At2g29880-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
32405700 .. 32408995
3296 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00025780.1

Sequence Viewer

Length: 219 bp
ATGGGAGACTGTGCCACTAGACCAAATGGTACTGGGCAATTGAGGTATAGTTTTGATACTTTCCGAGAGATGGGAGATTCACAAGGGAATGGTAAAAGAAATGATTACAAAACTTGGAACATTGAAGAGAGCAATTTTTGGCTTGTTAAGGACTACACAATTTTCTTTGATAGAAATGTCGTTCAGATGAATTTCCTCCCGAACCAAAAGAATATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

72

Amino Acids

8.52

Weight (kDa)

6.11

Isoelectric Point (pI)

43.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0026649)

Species Orthologous Gene IDs
malus_domestica MD10G1087000.v1.1
rosa_roxburghii Rroxscaffold_1G00025780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 190
AfaI GTAC 1 cut(s) 31
AfiI CCNNNNNNNGG 1 cut(s) 70
AgsI TTSAA 1 cut(s) 125
ApoI RAATTY 1 cut(s) 190
BccI CCATC 1 cut(s) 64
BfaI CTAG 1 cut(s) 18
BmrI ACTGGG 1 cut(s) 42
BmuI ACTGGG 1 cut(s) 42
Bsc4I CCNNNNNNNGG 1 cut(s) 70
Bse1I ACTGG 1 cut(s) 37
BseLI CCNNNNNNNGG 1 cut(s) 70
BseNI ACTGG 1 cut(s) 37
BslI CCNNNNNNNGG 1 cut(s) 70
BsrI ACTGG 1 cut(s) 37
Bst4CI ACNGT 1 cut(s) 11
Bst6I CTCTTC 1 cut(s) 120
Csp6I GTAC 1 cut(s) 30
CviJI RGCY 1 cut(s) 142
CviKI_1 RGCY 1 cut(s) 142
CviQI GTAC 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
FaiI YATR 1 cut(s) 48
FspBI CTAG 1 cut(s) 18
HinfI GANTC 1 cut(s) 77
Hpy188I TCNGA 2 cut(s) 65, 186
Hpy188III TCNNGA 1 cut(s) 199
HpyCH4III ACNGT 1 cut(s) 11
LpnPI CCDG 1 cut(s) 18
MaeI CTAG 1 cut(s) 18
MboII GAAGA 1 cut(s) 137
MfeI CAATTG 1 cut(s) 38
MluCI AATT 4 cut(s) 38, 133, 159, 190
MnlI CCTC 2 cut(s) 36, 206
MseI TTAA 1 cut(s) 147
MunI CAATTG 1 cut(s) 38
PfeI GAWTC 1 cut(s) 77
RsaI GTAC 1 cut(s) 31
RsaNI GTAC 1 cut(s) 30
SaqAI TTAA 1 cut(s) 147
SetI ASST 1 cut(s) 47
SgeI CNNG 7 cut(s) 30, 45, 77, 95, 126, 155, 211
Sse9I AATT 4 cut(s) 38, 133, 159, 190
SspMI CTAG 1 cut(s) 18
TaaI ACNGT 1 cut(s) 11
TasI AATT 4 cut(s) 38, 133, 159, 190
TfiI GAWTC 1 cut(s) 77
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TspDTI ATGAA 1 cut(s) 203
XapI RAATTY 1 cut(s) 190
XspI CTAG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.