Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014424.1

Orthogroup ID

OG0031478

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 496

Gene Structure 496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014424.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 286 bp

gatgaacttggagagcatgcatggtcaaggtggcgctcataaaaatattgcaaattcagttcagcagaaggatgagaaatcagcaggacaaggttcttggggtaaaaatgaggcaggggcgactccagtacctgcagaaaaagttaaagctgctgccaaagctggccttgctgctgctgcaataaaagcaaaattgtttgctgatcatgaagaacgggaaattcagaggttatctgctaatattgtaaatcatcaggtaaatctagtgcttactgcaattttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0016514 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0051276 GO:0070013 GO:0070603 GO:0071840 GO:1902494 GO:1904949

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Myb_DNA-binding SWIRM SWIRM-assoc_1

Protein Analysis

94

Amino Acids

9.88

Weight (kDa)

9.1

Isoelectric Point (pI)

33.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031478)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8221840.1_g000001 Rmu_sc0014424.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	140
AcsI	RAATTY	2 cut(s)	53, 220
AfaI	GTAC	1 cut(s)	130
AluBI	AGCT	2 cut(s)	150, 162
AluI	AGCT	2 cut(s)	150, 162
AlwNI	CAGNNNCTG	1 cut(s)	132
AoxI	GGCC	1 cut(s)	164
ApeKI	GCWGC	5 cut(s)	150, 153, 171, 174, 177
ApoI	RAATTY	2 cut(s)	53, 220
AspLEI	GCGC	1 cut(s)	36
BaeI	ACNNNNGTAYC	2 cut(s)	112, 145
BbvI	GCAGC	5 cut(s)	137, 140, 158, 161, 164
BclI	TGATCA	1 cut(s)	203
BfaI	CTAG	1 cut(s)	264
BfmI	CTRYAG	1 cut(s)	133
BfoI	RGCGCY	1 cut(s)	37
BfuAI	ACCTGC	1 cut(s)	140
BisI	GCNGC	5 cut(s)	151, 154, 172, 175, 178
BlsI	GCNGC	5 cut(s)	152, 155, 173, 176, 179
BpmI	CTGGAG	1 cut(s)	109
Bse1I	ACTGG	1 cut(s)	126
BseGI	GGATG	1 cut(s)	77
BseNI	ACTGG	1 cut(s)	126
BseXI	GCAGC	5 cut(s)	137, 140, 158, 161, 164
BshFI	GGCC	1 cut(s)	166
BsnI	GGCC	1 cut(s)	166
Bsp143I	GATC	1 cut(s)	203
BspANI	GGCC	1 cut(s)	166
BspHI	TCATGA	1 cut(s)	206
BspMAI	CTGCAG	1 cut(s)	137
BspMI	ACCTGC	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	126
BssMI	GATC	1 cut(s)	203
BstC8I	GCNNGC	2 cut(s)	18, 164
BstF5I	GGATG	1 cut(s)	77
BstH2I	RGCGCY	1 cut(s)	37
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	1 cut(s)	206
BstMBI	GATC	1 cut(s)	203
BstMWI	GCNNNNNNNGC	4 cut(s)	159, 168, 177, 186
BstNSI	RCATGY	1 cut(s)	20
BstSFI	CTRYAG	1 cut(s)	133
BstV1I	GCAGC	5 cut(s)	137, 140, 158, 161, 164
BsuRI	GGCC	1 cut(s)	166
BtsCI	GGATG	1 cut(s)	77
BveI	ACCTGC	1 cut(s)	140
Cac8I	GCNNGC	2 cut(s)	18, 164
CaiI	CAGNNNCTG	1 cut(s)	132
CciI	TCATGA	1 cut(s)	206
CfoI	GCGC	1 cut(s)	36
Csp6I	GTAC	1 cut(s)	129
CviAII	CATG	3 cut(s)	17, 21, 207
CviJI	RGCY	3 cut(s)	150, 162, 166
CviKI_1	RGCY	3 cut(s)	150, 162, 166
CviQI	GTAC	1 cut(s)	129
DpnI	GATC	1 cut(s)	205
DpnII	GATC	1 cut(s)	203
EcoT22I	ATGCAT	1 cut(s)	22
FaeI	CATG	3 cut(s)	20, 24, 210
FaiI	YATR	4 cut(s)	18, 22, 40, 208
FalI	AAGNNNNNCTT	2 cut(s)	151, 183
FatI	CATG	3 cut(s)	16, 20, 206
FbaI	TGATCA	1 cut(s)	203
Fnu4HI	GCNGC	5 cut(s)	151, 154, 172, 175, 178
FokI	GGATG	1 cut(s)	84
Fsp4HI	GCNGC	5 cut(s)	151, 154, 172, 175, 178
FspBI	CTAG	1 cut(s)	264
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	5 cut(s)	151, 154, 172, 175, 178
GsuI	CTGGAG	1 cut(s)	109
HaeII	RGCGCY	1 cut(s)	37
HaeIII	GGCC	1 cut(s)	166
HhaI	GCGC	1 cut(s)	36
Hin1II	CATG	3 cut(s)	20, 24, 210
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HinfI	GANTC	1 cut(s)	122
Hpy188I	TCNGA	1 cut(s)	226
Hpy188III	TCNNGA	1 cut(s)	207
HpyAV	CCTTC	1 cut(s)	62
HpyCH4V	TGCA	5 cut(s)	20, 51, 135, 180, 276
HpyF10VI	GCNNNNNNNGC	4 cut(s)	159, 168, 177, 186
Hsp92II	CATG	3 cut(s)	20, 24, 210
HspAI	GCGC	1 cut(s)	34
Ksp22I	TGATCA	1 cut(s)	203
Kzo9I	GATC	1 cut(s)	203
LpnPI	CCDG	6 cut(s)	70, 100, 139, 145, 148, 240
Lsp1109I	GCAGC	5 cut(s)	137, 140, 158, 161, 164
MaeI	CTAG	1 cut(s)	264
MalI	GATC	1 cut(s)	205
MboI	GATC	1 cut(s)	203
MboII	GAAGA	1 cut(s)	222
MluCI	AATT	4 cut(s)	53, 192, 220, 277
MlyI	GAGTC	1 cut(s)	116
MnlI	CCTC	2 cut(s)	104, 220
Mph1103I	ATGCAT	1 cut(s)	22
MseI	TTAA	1 cut(s)	145
MwoI	GCNNNNNNNGC	4 cut(s)	159, 168, 177, 186
NdeII	GATC	1 cut(s)	203
NlaIII	CATG	3 cut(s)	20, 24, 210
NsiI	ATGCAT	1 cut(s)	22
NspI	RCATGY	1 cut(s)	20
PaeI	GCATGC	1 cut(s)	20
PagI	TCATGA	1 cut(s)	206
PkrI	GCNGC	5 cut(s)	152, 155, 173, 176, 179
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
PstI	CTGCAG	1 cut(s)	137
PstNI	CAGNNNCTG	1 cut(s)	132
RsaI	GTAC	1 cut(s)	130
RsaNI	GTAC	1 cut(s)	129
SaqAI	TTAA	1 cut(s)	145
SatI	GCNGC	5 cut(s)	151, 154, 172, 175, 178
Sau3AI	GATC	1 cut(s)	203
SchI	GAGTC	1 cut(s)	116
SetI	ASST	7 cut(s)	32, 95, 134, 152, 164, 231, 259
SfcI	CTRYAG	1 cut(s)	133
SphI	GCATGC	1 cut(s)	20
Sse9I	AATT	4 cut(s)	53, 192, 220, 277
SspI	AATATT	2 cut(s)	47, 242
SspMI	CTAG	1 cut(s)	264
TasI	AATT	4 cut(s)	53, 192, 220, 277
Tru1I	TTAA	1 cut(s)	145
Tru9I	TTAA	1 cut(s)	145
TseI	GCWGC	5 cut(s)	150, 153, 171, 174, 177
TspDTI	ATGAA	2 cut(s)	18, 223
XapI	RAATTY	2 cut(s)	53, 220
XceI	RCATGY	1 cut(s)	20
XspI	CTAG	1 cut(s)	264
Zsp2I	ATGCAT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.