gag-polypeptide of LTR copia-type
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_multiflora | Rmu_sc0008167.1_g000002 Rmu_sc0025301.1_g000001 |
| rosa_samantha | Rh4CG294900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 178 |
| AclWI | GGATC | 1 cut(s) | 174 |
| AcsI | RAATTY | 1 cut(s) | 69 |
| AcuI | CTGAAG | 1 cut(s) | 44 |
| AjiI | CACGTC | 1 cut(s) | 235 |
| AjnI | CCWGG | 1 cut(s) | 228 |
| AluBI | AGCT | 2 cut(s) | 254, 260 |
| AluI | AGCT | 2 cut(s) | 254, 260 |
| AlwI | GGATC | 1 cut(s) | 174 |
| Ama87I | CYCGRG | 1 cut(s) | 218 |
| AoxI | GGCC | 1 cut(s) | 192 |
| ApoI | RAATTY | 1 cut(s) | 69 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 213 |
| AvaI | CYCGRG | 1 cut(s) | 218 |
| BccI | CCATC | 2 cut(s) | 191, 314 |
| BciT130I | CCWGG | 1 cut(s) | 230 |
| BfaI | CTAG | 2 cut(s) | 48, 225 |
| Bme1390I | CCNGG | 1 cut(s) | 230 |
| BmeT110I | CYCGRG | 1 cut(s) | 218 |
| BmgBI | CACGTC | 1 cut(s) | 235 |
| BmrFI | CCNGG | 1 cut(s) | 230 |
| BmsI | GCATC | 1 cut(s) | 193 |
| BpuEI | CTTGAG | 2 cut(s) | 173, 240 |
| Bse1I | ACTGG | 1 cut(s) | 148 |
| BseBI | CCWGG | 1 cut(s) | 230 |
| BseGI | GGATG | 1 cut(s) | 309 |
| BseNI | ACTGG | 1 cut(s) | 148 |
| BshFI | GGCC | 1 cut(s) | 194 |
| BsiHKCI | CYCGRG | 1 cut(s) | 218 |
| BsnI | GGCC | 1 cut(s) | 194 |
| BsoBI | CYCGRG | 1 cut(s) | 218 |
| Bsp143I | GATC | 2 cut(s) | 63, 166 |
| BspACI | CCGC | 1 cut(s) | 178 |
| BspANI | GGCC | 1 cut(s) | 194 |
| BspPI | GGATC | 1 cut(s) | 174 |
| BsrI | ACTGG | 1 cut(s) | 148 |
| BssMI | GATC | 2 cut(s) | 63, 166 |
| Bst2UI | CCWGG | 1 cut(s) | 230 |
| BstC8I | GCNNGC | 3 cut(s) | 34, 182, 252 |
| BstDEI | CTNAG | 1 cut(s) | 283 |
| BstF5I | GGATG | 1 cut(s) | 309 |
| BstKTI | GATC | 2 cut(s) | 66, 169 |
| BstMBI | GATC | 2 cut(s) | 63, 166 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 266 |
| BstNI | CCWGG | 1 cut(s) | 230 |
| BstSCI | CCNGG | 1 cut(s) | 228 |
| BsuRI | GGCC | 1 cut(s) | 194 |
| BtrI | CACGTC | 1 cut(s) | 235 |
| BtsCI | GGATG | 1 cut(s) | 309 |
| Cac8I | GCNNGC | 3 cut(s) | 34, 182, 252 |
| CviJI | RGCY | 9 cut(s) | 36, 147, 194, 223, 228, 254, 260, 281, 305 |
| CviKI_1 | RGCY | 9 cut(s) | 36, 147, 194, 223, 228, 254, 260, 281, 305 |
| DdeI | CTNAG | 1 cut(s) | 283 |
| DpnI | GATC | 2 cut(s) | 65, 168 |
| DpnII | GATC | 2 cut(s) | 63, 166 |
| EciI | GGCGGA | 1 cut(s) | 167 |
| Eco32I | GATATC | 1 cut(s) | 175 |
| Eco57I | CTGAAG | 1 cut(s) | 44 |
| Eco88I | CYCGRG | 1 cut(s) | 218 |
| EcoRII | CCWGG | 1 cut(s) | 228 |
| EcoRV | GATATC | 1 cut(s) | 175 |
| FaiI | YATR | 3 cut(s) | 18, 327, 329 |
| FauNDI | CATATG | 1 cut(s) | 327 |
| FokI | GGATG | 1 cut(s) | 296 |
| FspBI | CTAG | 2 cut(s) | 48, 225 |
| HaeIII | GGCC | 1 cut(s) | 194 |
| HindIII | AAGCTT | 1 cut(s) | 258 |
| HinfI | GANTC | 3 cut(s) | 201, 214, 319 |
| Hpy188I | TCNGA | 4 cut(s) | 55, 63, 99, 151 |
| Hpy188III | TCNNGA | 2 cut(s) | 170, 218 |
| HpyAV | CCTTC | 1 cut(s) | 87 |
| HpyCH4IV | ACGT | 1 cut(s) | 234 |
| HpyCH4V | TGCA | 2 cut(s) | 16, 32 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 266 |
| HpyF3I | CTNAG | 1 cut(s) | 283 |
| HpySE526I | ACGT | 1 cut(s) | 234 |
| Kzo9I | GATC | 2 cut(s) | 63, 166 |
| LmnI | GCTCC | 1 cut(s) | 133 |
| LpnPI | CCDG | 7 cut(s) | 24, 122, 129, 145, 194, 215, 242 |
| LweI | GCATC | 1 cut(s) | 193 |
| MaeI | CTAG | 2 cut(s) | 48, 225 |
| MaeII | ACGT | 1 cut(s) | 234 |
| MaeIII | GTNAC | 1 cut(s) | 104 |
| MalI | GATC | 2 cut(s) | 65, 168 |
| MboI | GATC | 2 cut(s) | 63, 166 |
| MboII | GAAGA | 1 cut(s) | 65 |
| MluCI | AATT | 2 cut(s) | 69, 116 |
| MlyI | GAGTC | 1 cut(s) | 313 |
| MnlI | CCTC | 1 cut(s) | 280 |
| MroXI | GAANNNNTTC | 1 cut(s) | 213 |
| MslI | CAYNNNNRTG | 1 cut(s) | 314 |
| MspR9I | CCNGG | 1 cut(s) | 230 |
| MvaI | CCWGG | 1 cut(s) | 230 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 266 |
| NdeI | CATATG | 1 cut(s) | 327 |
| NdeII | GATC | 2 cut(s) | 63, 166 |
| PaeR7I | CTCGAG | 1 cut(s) | 218 |
| PdmI | GAANNNNTTC | 1 cut(s) | 213 |
| PfeI | GAWTC | 2 cut(s) | 201, 214 |
| PleI | GAGTC | 1 cut(s) | 313 |
| PpsI | GAGTC | 1 cut(s) | 313 |
| Psp6I | CCWGG | 1 cut(s) | 228 |
| PspGI | CCWGG | 1 cut(s) | 228 |
| RseI | CAYNNNNRTG | 1 cut(s) | 314 |
| Sau3AI | GATC | 2 cut(s) | 63, 166 |
| SchI | GAGTC | 1 cut(s) | 313 |
| ScrFI | CCNGG | 1 cut(s) | 230 |
| SetI | ASST | 5 cut(s) | 111, 164, 237, 256, 262 |
| SfaNI | GCATC | 1 cut(s) | 193 |
| Sfr274I | CTCGAG | 1 cut(s) | 218 |
| SlaI | CTCGAG | 1 cut(s) | 218 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 314 |
| SmlI | CTYRAG | 3 cut(s) | 188, 218, 255 |
| SmoI | CTYRAG | 3 cut(s) | 188, 218, 255 |
| Sse9I | AATT | 2 cut(s) | 69, 116 |
| SsiI | CCGC | 1 cut(s) | 178 |
| SspMI | CTAG | 2 cut(s) | 48, 225 |
| StyD4I | CCNGG | 1 cut(s) | 228 |
| TaiI | ACGT | 1 cut(s) | 237 |
| TaqI | TCGA | 1 cut(s) | 219 |
| TasI | AATT | 2 cut(s) | 69, 116 |
| TfiI | GAWTC | 2 cut(s) | 201, 214 |
| TspDTI | ATGAA | 1 cut(s) | 69 |
| XapI | RAATTY | 1 cut(s) | 69 |
| XhoI | CTCGAG | 1 cut(s) | 218 |
| XmnI | GAANNNNTTC | 1 cut(s) | 213 |
| XspI | CTAG | 2 cut(s) | 48, 225 |