Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002574.1

Orthogroup ID

OG0030313

Physical Location & Seq

Genomic Coordinates Forward (+)

13591 .. 17481

Gene Structure 3891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002574.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

atgacttattgggaattccctggcggcaaggtcaagatgaggatcatgatgaagagattcccaacacatgataaggggcggcgcgtgtggaagaacacggaggatgagatccttatggccgccgttatgaggtacggcaagaaccagtgggttcgaatctcctcccttgtcgttagcaaatccgccaagcagtggaaggctcgctgctaccagtggctcgatccctccatcaaaaagactgagtggactagagaagaggatgagaaacttcttcatcttgctatgctcatgattgcacacctattacgagaagctgctactgctactgctactgctactgctactgctcctgctactactactcctcctcttgatactgctcttgctcctgctactattactgctactactcctcctcctcctgatactgctactactactgctcttgctcctgctactacttcttctcatgatactactactgctcatgctacttccgccgtcgattcgtggctggaggacggagaaatggctcgatctccatcacgggtatctgggtcagtggagactcagtctgggcttcgatctgatgtgggccgccttgccattttgggtttggagttggagtttttcggtgagggagtggagataggtgaaatggagaggttagataaggtgtcagagtgggattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009870 GO:0009889 GO:0009987 GO:0010204 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032502 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Myb_Cef Myb_DNA-binding

Protein Analysis

230

Amino Acids

25.42

Weight (kDa)

6.0

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030313)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0265461
rosa_multiflora	Rmu_sc0002574.1_g000003

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	192
AccII	CGCG	1 cut(s)	84
AciI	CCGC	6 cut(s)	24, 79, 120, 183, 498, 598
AclWI	GGATC	3 cut(s)	50, 103, 215
AcoI	YGGCCR	1 cut(s)	117
AcsI	RAATTY	1 cut(s)	14
AfaI	GTAC	1 cut(s)	134
AfiI	CCNNNNNNNGG	2 cut(s)	129, 192
AjnI	CCWGG	1 cut(s)	19
AluBI	AGCT	1 cut(s)	314
AluI	AGCT	1 cut(s)	314
Alw26I	GTCTC	1 cut(s)	560
AlwI	GGATC	3 cut(s)	50, 103, 215
AoxI	GGCC	2 cut(s)	117, 595
ApeKI	GCWGC	2 cut(s)	204, 314
ApoI	RAATTY	1 cut(s)	14
Asp700I	GAANNNNTTC	1 cut(s)	56
AspLEI	GCGC	1 cut(s)	84
AspS9I	GGNCC	1 cut(s)	595
AsuHPI	GGTGA	2 cut(s)	647, 665
AsuII	TTCGAA	1 cut(s)	154
BbvI	GCAGC	2 cut(s)	191, 301
BccI	CCATC	2 cut(s)	236, 550
BceAI	ACGGC	3 cut(s)	107, 151, 485
BciT130I	CCWGG	1 cut(s)	21
BcoDI	GTCTC	1 cut(s)	560
BfaI	CTAG	1 cut(s)	249
BisI	GCNGC	6 cut(s)	25, 80, 120, 205, 315, 598
BlsI	GCNGC	6 cut(s)	26, 81, 121, 206, 316, 599
Bme1390I	CCNGG	1 cut(s)	21
BmgT120I	GGNCC	1 cut(s)	595
BmrFI	CCNGG	1 cut(s)	21
BpmI	CTGGAG	1 cut(s)	536
Bpu14I	TTCGAA	1 cut(s)	154
BsaBI	GATNNNNATC	2 cut(s)	41, 541
BsaJI	CCNNGG	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	2 cut(s)	129, 192
Bse1I	ACTGG	2 cut(s)	145, 211
Bse8I	GATNNNNATC	2 cut(s)	41, 541
BseBI	CCWGG	1 cut(s)	21
BseDI	CCNNGG	1 cut(s)	19
BseGI	GGATG	2 cut(s)	109, 265
BseJI	GATNNNNATC	2 cut(s)	41, 541
BseLI	CCNNNNNNNGG	2 cut(s)	129, 192
BseMII	CTCAG	2 cut(s)	231, 584
BseNI	ACTGG	2 cut(s)	145, 211
BseRI	GAGGAG	6 cut(s)	151, 354, 357, 402, 405, 408
BseXI	GCAGC	2 cut(s)	191, 301
Bsh1236I	CGCG	1 cut(s)	84
BshFI	GGCC	2 cut(s)	119, 597
BslI	CCNNNNNNNGG	2 cut(s)	129, 192
BsmAI	GTCTC	1 cut(s)	560
BsnI	GGCC	2 cut(s)	119, 597
Bsp119I	TTCGAA	1 cut(s)	154
Bsp143I	GATC	5 cut(s)	42, 108, 220, 536, 584
BspACI	CCGC	6 cut(s)	24, 79, 120, 183, 498, 598
BspANI	GGCC	2 cut(s)	119, 597
BspCNI	CTCAG	2 cut(s)	232, 583
BspFNI	CGCG	1 cut(s)	84
BspHI	TCATGA	3 cut(s)	45, 288, 469
BspPI	GGATC	3 cut(s)	50, 103, 215
BspT104I	TTCGAA	1 cut(s)	154
BsrI	ACTGG	2 cut(s)	145, 211
BssECI	CCNNGG	1 cut(s)	19
BssMI	GATC	5 cut(s)	42, 108, 220, 536, 584
Bst2UI	CCWGG	1 cut(s)	21
Bst6I	CTCTTC	2 cut(s)	47, 249
BstBI	TTCGAA	1 cut(s)	154
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	2 cut(s)	240, 570
BstF5I	GGATG	2 cut(s)	109, 265
BstFNI	CGCG	1 cut(s)	84
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	5 cut(s)	45, 111, 223, 539, 587
BstMAI	GTCTC	1 cut(s)	560
BstMBI	GATC	5 cut(s)	42, 108, 220, 536, 584
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 497
BstNI	CCWGG	1 cut(s)	21
BstSCI	CCNGG	1 cut(s)	19
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	2 cut(s)	191, 301
BstX2I	RGATCY	1 cut(s)	108
BstYI	RGATCY	1 cut(s)	108
BsuRI	GGCC	2 cut(s)	119, 597
BtsCI	GGATG	2 cut(s)	109, 265
BtsI	GCAGTG	1 cut(s)	197
BtsIMutI	CAGTG	4 cut(s)	152, 197, 218, 567
Cac8I	GCNNGC	1 cut(s)	202
CciI	TCATGA	3 cut(s)	45, 288, 469
CfoI	GCGC	1 cut(s)	84
Cfr13I	GGNCC	1 cut(s)	595
Csp6I	GTAC	1 cut(s)	133
CviAII	CATG	5 cut(s)	46, 68, 289, 470, 488
CviJI	RGCY	8 cut(s)	119, 200, 217, 314, 514, 533, 580, 597
CviKI_1	RGCY	8 cut(s)	119, 200, 217, 314, 514, 533, 580, 597
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	2 cut(s)	240, 570
DpnI	GATC	5 cut(s)	44, 110, 222, 538, 586
DpnII	GATC	5 cut(s)	42, 108, 220, 536, 584
EaeI	YGGCCR	1 cut(s)	117
Eam1104I	CTCTTC	2 cut(s)	47, 249
EarI	CTCTTC	2 cut(s)	47, 249
EciI	GGCGGA	2 cut(s)	172, 487
EcoRI	GAATTC	1 cut(s)	14
EcoRII	CCWGG	1 cut(s)	19
FaeI	CATG	5 cut(s)	49, 71, 292, 473, 491
FaiI	YATR	8 cut(s)	47, 69, 116, 128, 284, 290, 471, 489
FatI	CATG	5 cut(s)	45, 67, 288, 469, 487
Fnu4HI	GCNGC	6 cut(s)	25, 80, 120, 205, 315, 598
FokI	GGATG	2 cut(s)	116, 272
Fsp4HI	GCNGC	6 cut(s)	25, 80, 120, 205, 315, 598
FspBI	CTAG	1 cut(s)	249
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	6 cut(s)	25, 80, 120, 205, 315, 598
GsuI	CTGGAG	1 cut(s)	536
HaeIII	GGCC	2 cut(s)	119, 597
HhaI	GCGC	1 cut(s)	84
Hin1II	CATG	5 cut(s)	49, 71, 292, 473, 491
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HinfI	GANTC	4 cut(s)	57, 156, 506, 568
HphI	GGTGA	2 cut(s)	647, 665
Hpy166II	GTNNAC	1 cut(s)	246
Hpy188I	TCNGA	2 cut(s)	589, 682
Hpy188III	TCNNGA	6 cut(s)	34, 46, 289, 371, 422, 470
Hpy8I	GTNNAC	1 cut(s)	246
Hpy99I	CGWCG	1 cut(s)	506
HpyAV	CCTTC	1 cut(s)	190
HpyCH4V	TGCA	1 cut(s)	296
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 497
HpyF3I	CTNAG	2 cut(s)	240, 570
Hsp92II	CATG	5 cut(s)	49, 71, 292, 473, 491
HspAI	GCGC	1 cut(s)	82
Kzo9I	GATC	5 cut(s)	42, 108, 220, 536, 584
LmnI	GCTCC	3 cut(s)	352, 391, 454
Lsp1109I	GCAGC	2 cut(s)	191, 301
MaeI	CTAG	1 cut(s)	249
MalI	GATC	5 cut(s)	44, 110, 222, 538, 586
MboI	GATC	5 cut(s)	42, 108, 220, 536, 584
MboII	GAAGA	5 cut(s)	64, 103, 263, 266, 456
MflI	RGATCY	1 cut(s)	108
MluCI	AATT	1 cut(s)	14
MlyI	GAGTC	1 cut(s)	562
MmeI	TCCRAC	1 cut(s)	603
MroXI	GAANNNNTTC	1 cut(s)	56
MspR9I	CCNGG	1 cut(s)	21
MvaI	CCWGG	1 cut(s)	21
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	2 cut(s)	320, 497
NdeII	GATC	5 cut(s)	42, 108, 220, 536, 584
NlaIII	CATG	5 cut(s)	49, 71, 292, 473, 491
NspV	TTCGAA	1 cut(s)	154
PagI	TCATGA	3 cut(s)	45, 288, 469
PdmI	GAANNNNTTC	1 cut(s)	56
PfeI	GAWTC	3 cut(s)	57, 156, 506
PflFI	GACNNNGTC	1 cut(s)	571
PflMI	CCANNNNNTGG	1 cut(s)	192
PkrI	GCNGC	6 cut(s)	26, 81, 121, 206, 316, 599
PleI	GAGTC	1 cut(s)	562
PpsI	GAGTC	1 cut(s)	562
Psp6I	CCWGG	1 cut(s)	19
PspGI	CCWGG	1 cut(s)	19
PspPI	GGNCC	1 cut(s)	595
PsuI	RGATCY	1 cut(s)	108
PsyI	GACNNNGTC	1 cut(s)	571
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
SatI	GCNGC	6 cut(s)	25, 80, 120, 205, 315, 598
Sau3AI	GATC	5 cut(s)	42, 108, 220, 536, 584
Sau96I	GGNCC	1 cut(s)	595
SchI	GAGTC	1 cut(s)	562
ScrFI	CCNGG	1 cut(s)	21
SetI	ASST	7 cut(s)	33, 134, 303, 316, 655, 668, 678
SfuI	TTCGAA	1 cut(s)	154
Sse9I	AATT	1 cut(s)	14
SsiI	CCGC	6 cut(s)	24, 79, 120, 183, 498, 598
SspMI	CTAG	1 cut(s)	249
StyD4I	CCNGG	1 cut(s)	19
TaqI	TCGA	5 cut(s)	154, 219, 504, 535, 583
TasI	AATT	1 cut(s)	14
TauI	GCSGC	4 cut(s)	27, 82, 122, 600
TfiI	GAWTC	3 cut(s)	57, 156, 506
TscAI	CASTG	4 cut(s)	152, 197, 218, 567
TseI	GCWGC	2 cut(s)	204, 314
TspDTI	ATGAA	2 cut(s)	65, 263
TspGWI	ACGGA	2 cut(s)	113, 537
TspRI	CASTG	4 cut(s)	152, 197, 218, 567
Tth111I	GACNNNGTC	1 cut(s)	571
Van91I	CCANNNNNTGG	1 cut(s)	192
XapI	RAATTY	1 cut(s)	14
XcmI	CCANNNNNNNNNTGG	1 cut(s)	613
XmnI	GAANNNNTTC	1 cut(s)	56
XspI	CTAG	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.