Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8231095.1

Orthogroup ID

OG0028032

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 431

Gene Structure 431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8231095.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

agtcaaagaaagttgcagttggaaattgaggaacaatcaaagtaccttgaaaagatgtttgagcaacaaaggaagatggaagacaacagggtcaagccgacatcatcaacgtcagatgagcataataaaataggaaccagcactcctgtggatgaaggttcacaagatgcaagtatgaaacagaaggcacaagaatctgaaactcatgagaatcatgatcctccaggcgatgccgattctggtgccgtccccacaaaacgagcaaggactggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

91

Amino Acids

10.23

Weight (kDa)

5.35

Isoelectric Point (pI)

69.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028032)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01781
rosa_multiflora	Rmu_co8231095.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	89
AccB1I	GGYRCC	1 cut(s)	242
AclWI	GGATC	1 cut(s)	212
AfaI	GTAC	1 cut(s)	44
AgsI	TTSAA	1 cut(s)	50
AjnI	CCWGG	1 cut(s)	223
AleI	CACNNNNGTG	1 cut(s)	146
AloI	GAACNNNNNNTCC	2 cut(s)	127, 159
AlwI	GGATC	1 cut(s)	212
BanI	GGYRCC	1 cut(s)	242
BbsI	GAAGAC	1 cut(s)	87
BccI	CCATC	1 cut(s)	70
BceAI	ACGGC	1 cut(s)	230
BcgI	CGANNNNNNTGC	2 cut(s)	224, 258
BciT130I	CCWGG	1 cut(s)	225
Bme1390I	CCNGG	1 cut(s)	225
BmiI	GGNNCC	2 cut(s)	136, 244
BmrFI	CCNGG	1 cut(s)	225
BmsI	GCATC	2 cut(s)	157, 220
BpiI	GAAGAC	1 cut(s)	87
BpmI	CTGGAG	1 cut(s)	207
BsaXI	ACNNNNNCTCC	2 cut(s)	127, 157
Bse1I	ACTGG	1 cut(s)	274
BseBI	CCWGG	1 cut(s)	225
BseGI	GGATG	1 cut(s)	157
BseNI	ACTGG	1 cut(s)	274
BshNI	GGYRCC	1 cut(s)	242
BslFI	GGGAC	1 cut(s)	233
BsmFI	GGGAC	1 cut(s)	233
Bsp143I	GATC	1 cut(s)	217
BspHI	TCATGA	2 cut(s)	205, 214
BspLI	GGNNCC	2 cut(s)	136, 244
BspPI	GGATC	1 cut(s)	212
BspT107I	GGYRCC	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	274
BssMI	GATC	1 cut(s)	217
Bst2UI	CCWGG	1 cut(s)	225
BstF5I	GGATG	1 cut(s)	157
BstKTI	GATC	1 cut(s)	220
BstMBI	GATC	1 cut(s)	217
BstNI	CCWGG	1 cut(s)	225
BstSCI	CCNGG	1 cut(s)	223
BstV2I	GAAGAC	1 cut(s)	87
BtgZI	GCGATG	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	157
CciI	TCATGA	2 cut(s)	205, 214
Csp6I	GTAC	1 cut(s)	43
CviAII	CATG	2 cut(s)	206, 215
CviJI	RGCY	1 cut(s)	97
CviKI_1	RGCY	1 cut(s)	97
CviQI	GTAC	1 cut(s)	43
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
DrdI	GACNNNNNNGTC	1 cut(s)	89
DseDI	GACNNNNNNGTC	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	223
FaeI	CATG	2 cut(s)	209, 218
FaiI	YATR	4 cut(s)	123, 176, 207, 216
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	2 cut(s)	205, 214
FokI	GGATG	1 cut(s)	164
GsuI	CTGGAG	1 cut(s)	207
Hin1II	CATG	2 cut(s)	209, 218
HinfI	GANTC	3 cut(s)	194, 211, 236
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188I	TCNGA	2 cut(s)	115, 199
Hpy188III	TCNNGA	2 cut(s)	206, 215
Hpy8I	GTNNAC	1 cut(s)	161
HpyAV	CCTTC	2 cut(s)	149, 178
HpyCH4IV	ACGT	1 cut(s)	110
HpyCH4V	TGCA	2 cut(s)	16, 170
HpySE526I	ACGT	1 cut(s)	110
Hsp92II	CATG	2 cut(s)	209, 218
Kzo9I	GATC	1 cut(s)	217
LpnPI	CCDG	7 cut(s)	73, 151, 159, 210, 225, 237, 255
LweI	GCATC	2 cut(s)	157, 220
MaeII	ACGT	1 cut(s)	110
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	2 cut(s)	85, 92
MluCI	AATT	1 cut(s)	24
MnlI	CCTC	2 cut(s)	22, 231
MslI	CAYNNNNRTG	1 cut(s)	146
MspR9I	CCNGG	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	225
NdeII	GATC	1 cut(s)	217
NlaIII	CATG	2 cut(s)	209, 218
NlaIV	GGNNCC	2 cut(s)	136, 244
OliI	CACNNNNGTG	1 cut(s)	146
PagI	TCATGA	2 cut(s)	205, 214
PfeI	GAWTC	3 cut(s)	194, 211, 236
Psp6I	CCWGG	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	223
PspN4I	GGNNCC	2 cut(s)	136, 244
RsaI	GTAC	1 cut(s)	44
RsaNI	GTAC	1 cut(s)	43
RseI	CAYNNNNRTG	1 cut(s)	146
Sau3AI	GATC	1 cut(s)	217
ScrFI	CCNGG	1 cut(s)	225
SetI	ASST	3 cut(s)	48, 113, 160
SfaNI	GCATC	2 cut(s)	157, 220
SmiMI	CAYNNNNRTG	1 cut(s)	146
Sse9I	AATT	1 cut(s)	24
StyD4I	CCNGG	1 cut(s)	223
TaiI	ACGT	1 cut(s)	113
TasI	AATT	1 cut(s)	24
TfiI	GAWTC	3 cut(s)	194, 211, 236
TspDTI	ATGAA	2 cut(s)	168, 191
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.