Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0028032

Physical Location & Seq

Genomic Coordinates Forward (+)

1004933 .. 1005664

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g01781.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGAATCCATGTTCTGATAAGAAGAGGCGCACAAACAAAGGGAGAGTCGGTGGGATGGGGGTTTCACATGTTCTGATTTCATATTCATTCATGCAGACTCAAAGAAAGTTGCAGTTGCGAATTGACGAACAAGCAAAGTACCTTAAAAAGATATTTGAGCAACAAAGGAAGATGGAAGACAACAGGGTCAAGCCAACATCATCTATCTCAGATGAGCAGTATGAACTAGGAACCGCCATTCATATGGATGAAGGTTCACAAGATGCAAGTATGAAACAGAAGGAGCAAGAGTCTGTAACTCCTGGGAATCATGATCCCCCAGTCAGCCTATGTTGGACTCAGCCTGATGTACAAAATACCAGAGAATGTAGTTTGGACTTCTTGGTGATTAGGATCAAAGTTGAAAGTTGTGTGTTGTTTATCCTGGTGAGCTTGGGGAGATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

149

Amino Acids

16.94

Weight (kDa)

8.69

Isoelectric Point (pI)

42.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_CC_LHEQLE	PF14379	33 - 58	1.5e-06	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0028032)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01781
rosa_multiflora	Rmu_co8231095.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	185
AciI	CCGC	1 cut(s)	234
AclWI	GGATC	2 cut(s)	308, 401
AfaI	GTAC	2 cut(s)	140, 351
AflIII	ACRYGT	1 cut(s)	67
AgsI	TTSAA	1 cut(s)	404
AjnI	CCWGG	2 cut(s)	301, 423
AluBI	AGCT	1 cut(s)	432
AluI	AGCT	1 cut(s)	432
AlwI	GGATC	2 cut(s)	308, 401
ArsI	GACNNNNNNTTYG	2 cut(s)	30, 62
AspLEI	GCGC	1 cut(s)	30
AsuHPI	GGTGA	2 cut(s)	397, 439
BbsI	GAAGAC	1 cut(s)	183
BccI	CCATC	2 cut(s)	49, 166
BciT130I	CCWGG	2 cut(s)	303, 425
BfaI	CTAG	1 cut(s)	227
Bme1390I	CCNGG	2 cut(s)	303, 425
BmiI	GGNNCC	1 cut(s)	232
BmrFI	CCNGG	2 cut(s)	303, 425
BmrI	ACTGGG	1 cut(s)	314
BmsI	GCATC	1 cut(s)	253
BmuI	ACTGGG	1 cut(s)	314
BpiI	GAAGAC	1 cut(s)	183
BsaBI	GATNNNNATC	1 cut(s)	392
BsaJI	CCNNGG	1 cut(s)	302
BsaXI	ACNNNNNCTCC	4 cut(s)	34, 64, 275, 305
Bse1I	ACTGG	1 cut(s)	320
Bse8I	GATNNNNATC	1 cut(s)	392
BseBI	CCWGG	2 cut(s)	303, 425
BseDI	CCNNGG	1 cut(s)	302
BseGI	GGATG	2 cut(s)	60, 253
BseJI	GATNNNNATC	1 cut(s)	392
BseMII	CTCAG	2 cut(s)	222, 353
BseNI	ACTGG	1 cut(s)	320
Bsp1407I	TGTACA	1 cut(s)	349
Bsp143I	GATC	3 cut(s)	313, 393, 440
BspACI	CCGC	1 cut(s)	234
BspCNI	CTCAG	2 cut(s)	221, 352
BspHI	TCATGA	1 cut(s)	310
BspLI	GGNNCC	1 cut(s)	232
BspPI	GGATC	2 cut(s)	308, 401
BsrGI	TGTACA	1 cut(s)	349
BsrI	ACTGG	1 cut(s)	320
BssECI	CCNNGG	1 cut(s)	302
BssMI	GATC	3 cut(s)	313, 393, 440
Bst2UI	CCWGG	2 cut(s)	303, 425
Bst6I	CTCTTC	1 cut(s)	17
BstAUI	TGTACA	1 cut(s)	349
BstDEI	CTNAG	2 cut(s)	208, 339
BstF5I	GGATG	2 cut(s)	60, 253
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	3 cut(s)	316, 396, 443
BstMBI	GATC	3 cut(s)	313, 393, 440
BstNI	CCWGG	2 cut(s)	303, 425
BstNSI	RCATGY	1 cut(s)	71
BstSCI	CCNGG	2 cut(s)	301, 423
BstV2I	GAAGAC	1 cut(s)	183
BstXI	CCANNNNNNTGG	1 cut(s)	244
BtsCI	GGATG	2 cut(s)	60, 253
CciI	TCATGA	1 cut(s)	310
CfoI	GCGC	1 cut(s)	30
Csp6I	GTAC	2 cut(s)	139, 350
CviAII	CATG	4 cut(s)	9, 68, 91, 311
CviJI	RGCY	4 cut(s)	193, 327, 343, 432
CviKI_1	RGCY	4 cut(s)	193, 327, 343, 432
CviQI	GTAC	2 cut(s)	139, 350
DdeI	CTNAG	2 cut(s)	208, 339
DpnI	GATC	3 cut(s)	315, 395, 442
DpnII	GATC	3 cut(s)	313, 393, 440
DrdI	GACNNNNNNGTC	1 cut(s)	185
DseDI	GACNNNNNNGTC	1 cut(s)	185
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
EcoRII	CCWGG	2 cut(s)	301, 423
FaeI	CATG	4 cut(s)	12, 71, 94, 314
FatI	CATG	4 cut(s)	8, 67, 90, 310
FauNDI	CATATG	1 cut(s)	243
FokI	GGATG	2 cut(s)	67, 260
FspBI	CTAG	1 cut(s)	227
GlaI	GCGC	1 cut(s)	29
HhaI	GCGC	1 cut(s)	30
Hin1II	CATG	4 cut(s)	12, 71, 94, 314
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HinfI	GANTC	6 cut(s)	4, 45, 97, 290, 307, 337
HphI	GGTGA	2 cut(s)	397, 439
Hpy166II	GTNNAC	1 cut(s)	257
Hpy188I	TCNGA	3 cut(s)	16, 75, 211
Hpy188III	TCNNGA	1 cut(s)	311
Hpy8I	GTNNAC	1 cut(s)	257
HpyAV	CCTTC	2 cut(s)	245, 274
HpyCH4V	TGCA	3 cut(s)	94, 112, 266
HpyF3I	CTNAG	2 cut(s)	208, 339
Hsp92II	CATG	4 cut(s)	12, 71, 94, 314
HspAI	GCGC	1 cut(s)	28
Kzo9I	GATC	3 cut(s)	313, 393, 440
LmnI	GCTCC	1 cut(s)	283
LpnPI	CCDG	8 cut(s)	169, 288, 315, 333, 357, 373, 410, 437
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	1 cut(s)	227
MaeIII	GTNAC	1 cut(s)	295
MalI	GATC	3 cut(s)	315, 395, 442
MboI	GATC	3 cut(s)	313, 393, 440
MboII	GAAGA	3 cut(s)	34, 181, 188
MluCI	AATT	1 cut(s)	120
MlyI	GAGTC	4 cut(s)	54, 91, 299, 331
MmeI	TCCRAC	1 cut(s)	314
MnlI	CCTC	1 cut(s)	18
MseI	TTAA	1 cut(s)	144
MslI	CAYNNNNRTG	2 cut(s)	242, 246
MspR9I	CCNGG	2 cut(s)	303, 425
MvaI	CCWGG	2 cut(s)	303, 425
NdeI	CATATG	1 cut(s)	243
NdeII	GATC	3 cut(s)	313, 393, 440
NlaIII	CATG	4 cut(s)	12, 71, 94, 314
NlaIV	GGNNCC	1 cut(s)	232
NspI	RCATGY	1 cut(s)	71
PagI	TCATGA	1 cut(s)	310
PciI	ACATGT	1 cut(s)	67
PfeI	GAWTC	2 cut(s)	4, 307
PleI	GAGTC	4 cut(s)	53, 91, 298, 331
PpsI	GAGTC	4 cut(s)	53, 91, 298, 331
PscI	ACATGT	1 cut(s)	67
Psp6I	CCWGG	2 cut(s)	301, 423
PspGI	CCWGG	2 cut(s)	301, 423
PspN4I	GGNNCC	1 cut(s)	232
RsaI	GTAC	2 cut(s)	140, 351
RsaNI	GTAC	2 cut(s)	139, 350
RseI	CAYNNNNRTG	2 cut(s)	242, 246
SaqAI	TTAA	1 cut(s)	144
Sau3AI	GATC	3 cut(s)	313, 393, 440
SchI	GAGTC	4 cut(s)	54, 91, 299, 331
ScrFI	CCNGG	2 cut(s)	303, 425
SetI	ASST	3 cut(s)	144, 256, 434
SfaNI	GCATC	1 cut(s)	253
SmiMI	CAYNNNNRTG	2 cut(s)	242, 246
Sse9I	AATT	1 cut(s)	120
SsiI	CCGC	1 cut(s)	234
SspMI	CTAG	1 cut(s)	227
StyD4I	CCNGG	2 cut(s)	301, 423
TasI	AATT	1 cut(s)	120
TatI	WGTACW	1 cut(s)	349
TfiI	GAWTC	2 cut(s)	4, 307
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TspDTI	ATGAA	8 cut(s)	17, 69, 75, 79, 230, 237, 264, 287
XceI	RCATGY	1 cut(s)	71
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.