Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0030977

Physical Location & Seq

Genomic Coordinates Forward (+)

57547652 .. 57548395

Gene Structure 744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034952

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGGTTCAATAAAGACATTCATACTCAAATTCTCGGCGGACCCAATTGAATGGAGATGGAATGCAAGATCTAAGGTGGTCTTTGATTGCAAAGCAACTACAAGGAAGAACCGAAGAATAGATAATGATGTGAAGAACTACTGGAATACCAAGCTAAAAAAGAAGCTTTCCAAGATAGGAATTGACCCTCTAACCCACAAACCCATCTCCCAGGTCGATGATGAGCAGCTTCATCTTCCCACAAAATCCAGATTAAAGAAAACACTCACCCAAGAACCAAAACAACACCAATTTCACAAGGTACCATTTGGGTACCTTTTTCTTCTTCTCCACTTCATCTTCCCACAAAAACCCGATTCAAGAAAGCACGGAAAGCGGCTTTGCCTCTTATCTCCAAGGCGTCACCTGCCGTCCGTAACATCTAGCAGAAACAGATCCGTTGTCTTTGGAATAGGTCCACCACAGCAACCCAGAAGCCCATCAAAGCCGCTGTCGTCCCCAACACCTCCAGTACCATCCACAACATTGTCCACCATGCCGTCGATATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033036 GO:0033037 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051179 GO:0051252 GO:0051253 GO:0052545 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1900376 GO:1900377 GO:1901363 GO:1901700 GO:1902679 GO:1903085 GO:1903086 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

184

Amino Acids

21.01

Weight (kDa)

10.73

Isoelectric Point (pI)

64.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030977)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000031648 RLG00000034952

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	414
Acc36I	ACCTGC	1 cut(s)	414
Acc65I	GGTACC	2 cut(s)	301, 312
AccB1I	GGYRCC	2 cut(s)	301, 312
AciI	CCGC	3 cut(s)	38, 376, 488
AclWI	GGATC	1 cut(s)	429
AcsI	RAATTY	1 cut(s)	29
AcyI	GRCGYC	1 cut(s)	400
AfaI	GTAC	3 cut(s)	303, 314, 513
AgsI	TTSAA	3 cut(s)	9, 50, 360
AjnI	CCWGG	1 cut(s)	210
AluBI	AGCT	3 cut(s)	154, 166, 229
AluI	AGCT	3 cut(s)	154, 166, 229
AlwI	GGATC	1 cut(s)	429
ApeKI	GCWGC	1 cut(s)	226
ApoI	RAATTY	1 cut(s)	29
ArsI	GACNNNNNNTTYG	2 cut(s)	476, 508
Asp718I	GGTACC	2 cut(s)	301, 312
AspS9I	GGNCC	2 cut(s)	40, 455
AsuHPI	GGTGA	2 cut(s)	259, 395
AvaII	GGWCC	2 cut(s)	40, 455
BanI	GGYRCC	2 cut(s)	301, 312
BbvI	GCAGC	1 cut(s)	238
BccI	CCATC	4 cut(s)	51, 212, 487, 523
BceAI	ACGGC	2 cut(s)	394, 523
BciT130I	CCWGG	1 cut(s)	212
BfaI	CTAG	2 cut(s)	423, 550
BfuAI	ACCTGC	1 cut(s)	414
BglII	AGATCT	1 cut(s)	68
BisI	GCNGC	3 cut(s)	227, 377, 488
BlsI	GCNGC	3 cut(s)	228, 378, 489
Bme1390I	CCNGG	1 cut(s)	212
Bme18I	GGWCC	2 cut(s)	40, 455
BmgT120I	GGNCC	2 cut(s)	40, 455
BmiI	GGNNCC	3 cut(s)	42, 303, 314
BmrFI	CCNGG	1 cut(s)	212
BpmI	CTGGAG	1 cut(s)	492
BsaHI	GRCGYC	1 cut(s)	400
BsaJI	CCNNGG	2 cut(s)	210, 395
Bse1I	ACTGG	2 cut(s)	146, 509
BseBI	CCWGG	1 cut(s)	212
BseDI	CCNNGG	2 cut(s)	210, 395
BseGI	GGATG	1 cut(s)	515
BseNI	ACTGG	2 cut(s)	146, 509
BseXI	GCAGC	1 cut(s)	238
BshNI	GGYRCC	2 cut(s)	301, 312
BslFI	GGGAC	1 cut(s)	481
BsmFI	GGGAC	1 cut(s)	481
BsmI	GAATGC	1 cut(s)	67
Bsp143I	GATC	2 cut(s)	68, 434
BspACI	CCGC	3 cut(s)	38, 376, 488
BspLI	GGNNCC	3 cut(s)	42, 303, 314
BspMI	ACCTGC	1 cut(s)	414
BspPI	GGATC	1 cut(s)	429
BspT107I	GGYRCC	2 cut(s)	301, 312
BsrI	ACTGG	2 cut(s)	146, 509
BssECI	CCNNGG	2 cut(s)	210, 395
BssMI	GATC	2 cut(s)	68, 434
BssNI	GRCGYC	1 cut(s)	400
BssT1I	CCWWGG	1 cut(s)	395
Bst2UI	CCWGG	1 cut(s)	212
BstACI	GRCGYC	1 cut(s)	400
BstDEI	CTNAG	1 cut(s)	72
BstF5I	GGATG	1 cut(s)	515
BstKTI	GATC	2 cut(s)	71, 437
BstMBI	GATC	2 cut(s)	68, 434
BstMWI	GCNNNNNNNGC	2 cut(s)	373, 406
BstNI	CCWGG	1 cut(s)	212
BstSCI	CCNGG	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	238
BstX2I	RGATCY	2 cut(s)	68, 434
BstXI	CCANNNNNNTGG	1 cut(s)	51
BstYI	RGATCY	2 cut(s)	68, 434
BtsCI	GGATG	1 cut(s)	515
BveI	ACCTGC	1 cut(s)	414
Cfr13I	GGNCC	2 cut(s)	40, 455
CseI	GACGC	1 cut(s)	389
Csp6I	GTAC	3 cut(s)	302, 313, 512
CviAII	CATG	1 cut(s)	535
CviJI	RGCY	6 cut(s)	154, 166, 229, 379, 477, 487
CviKI_1	RGCY	6 cut(s)	154, 166, 229, 379, 477, 487
CviQI	GTAC	3 cut(s)	302, 313, 512
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	2 cut(s)	70, 436
DpnII	GATC	2 cut(s)	68, 434
EciI	GGCGGA	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	395
Eco32I	GATATC	1 cut(s)	546
Eco47I	GGWCC	2 cut(s)	40, 455
EcoRII	CCWGG	1 cut(s)	210
EcoRV	GATATC	1 cut(s)	546
EcoT14I	CCWWGG	1 cut(s)	395
ErhI	CCWWGG	1 cut(s)	395
FaeI	CATG	1 cut(s)	538
FaiI	YATR	2 cut(s)	23, 536
FalI	AAGNNNNNCTT	2 cut(s)	65, 97
FaqI	GGGAC	1 cut(s)	481
FatI	CATG	1 cut(s)	534
Fnu4HI	GCNGC	3 cut(s)	227, 377, 488
FokI	GGATG	1 cut(s)	502
Fsp4HI	GCNGC	3 cut(s)	227, 377, 488
FspBI	CTAG	2 cut(s)	423, 550
GluI	GCNGC	3 cut(s)	227, 377, 488
GsuI	CTGGAG	1 cut(s)	492
HgaI	GACGC	1 cut(s)	389
Hin1I	GRCGYC	1 cut(s)	400
Hin1II	CATG	1 cut(s)	538
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	1 cut(s)	356
HphI	GGTGA	2 cut(s)	259, 395
Hpy166II	GTNNAC	2 cut(s)	458, 531
Hpy188III	TCNNGA	2 cut(s)	249, 360
Hpy8I	GTNNAC	2 cut(s)	458, 531
Hpy99I	CGWCG	1 cut(s)	544
HpyCH4V	TGCA	2 cut(s)	65, 90
HpyF10VI	GCNNNNNNNGC	2 cut(s)	373, 406
HpyF3I	CTNAG	1 cut(s)	72
Hsp92I	GRCGYC	1 cut(s)	400
Hsp92II	CATG	1 cut(s)	538
KpnI	GGTACC	2 cut(s)	305, 316
Kzo9I	GATC	2 cut(s)	68, 434
LpnPI	CCDG	7 cut(s)	127, 197, 224, 262, 419, 484, 522
Lsp1109I	GCAGC	1 cut(s)	238
MaeI	CTAG	2 cut(s)	423, 550
MaeIII	GTNAC	2 cut(s)	401, 415
MalI	GATC	2 cut(s)	70, 436
MboI	GATC	2 cut(s)	68, 434
MboII	GAAGA	7 cut(s)	118, 126, 145, 227, 314, 317, 331
MfeI	CAATTG	1 cut(s)	45
MflI	RGATCY	2 cut(s)	68, 434
MluCI	AATT	4 cut(s)	29, 45, 180, 290
MnlI	CCTC	3 cut(s)	198, 395, 516
MseI	TTAA	1 cut(s)	254
MspA1I	CMGCKG	1 cut(s)	490
MspR9I	CCNGG	1 cut(s)	212
MunI	CAATTG	1 cut(s)	45
Mva1269I	GAATGC	1 cut(s)	67
MvaI	CCWGG	1 cut(s)	212
MwoI	GCNNNNNNNGC	2 cut(s)	373, 406
NdeII	GATC	2 cut(s)	68, 434
NlaIII	CATG	1 cut(s)	538
NlaIV	GGNNCC	3 cut(s)	42, 303, 314
NmeAIII	GCCGAG	1 cut(s)	14
NmuCI	GTSAC	1 cut(s)	401
PaqCI	CACCTGC	1 cut(s)	414
PctI	GAATGC	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	356
PkrI	GCNGC	3 cut(s)	228, 378, 489
Psp6I	CCWGG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	210
PspN4I	GGNNCC	3 cut(s)	42, 303, 314
PspPI	GGNCC	2 cut(s)	40, 455
PsuI	RGATCY	2 cut(s)	68, 434
RsaI	GTAC	3 cut(s)	303, 314, 513
RsaNI	GTAC	3 cut(s)	302, 313, 512
SaqAI	TTAA	1 cut(s)	254
SatI	GCNGC	3 cut(s)	227, 377, 488
Sau3AI	GATC	2 cut(s)	68, 434
Sau96I	GGNCC	2 cut(s)	40, 455
ScrFI	CCNGG	1 cut(s)	212
SinI	GGWCC	2 cut(s)	40, 455
Sse9I	AATT	4 cut(s)	29, 45, 180, 290
SsiI	CCGC	3 cut(s)	38, 376, 488
SspMI	CTAG	2 cut(s)	423, 550
StyD4I	CCNGG	1 cut(s)	210
StyI	CCWWGG	1 cut(s)	395
TaqI	TCGA	2 cut(s)	216, 542
TasI	AATT	4 cut(s)	29, 45, 180, 290
TauI	GCSGC	2 cut(s)	379, 490
TfiI	GAWTC	1 cut(s)	356
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TseFI	GTSAC	1 cut(s)	401
TseI	GCWGC	1 cut(s)	226
Tsp45I	GTSAC	1 cut(s)	401
TspDTI	ATGAA	3 cut(s)	10, 221, 325
TspGWI	ACGGA	3 cut(s)	384, 403, 427
VpaK11BI	GGWCC	2 cut(s)	40, 455
XapI	RAATTY	1 cut(s)	29
XspI	CTAG	2 cut(s)	423, 550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.