Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0032435

Physical Location & Seq

Genomic Coordinates Forward (+)

66365617 .. 66367214

Gene Structure 1598 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG509900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGTGTTTGTGGGCAGGTCTGAAGAGATGTGGGAAGAGTGTGAGACTCAGATGGTTGAACTATCTGAGGCCTGATATTATCAAAGGCAACATTACAGAAGATGAAGAAGAGCTCATCATCAGGCTCCACAAACTCTTGGGAAACAGATGGTCATTGATAGCCGGAAGGATACCAGGGCGAACTGACAATGAAATCAAAAACTACTGGAATTCCACCTTAAAGAGGAAGCTACAACAAGAAAATCACTTAGAAGTGTCTAAAGATGAGGAGATCAAGGAGGACTTGTCATCCTCTGCCGTTGTTGCCGCTGCCACTGATGAGGACGAAGATCATCATCGTCAGCATCATGATGCTGACGTTGGAATTGGAGTTGCAGCTGAAGCAACTAACTATAAGGGTACTGGTGATGATGAATATCTGAGGGATGACCTTTGGTGGAACTTCATAATGGATTTCAATGATACCCAACTCGACGTATCTGAATTCCAAAACGGCATCCCCGAGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

169

Amino Acids

19.56

Weight (kDa)

4.89

Isoelectric Point (pI)

44.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	28 - 72	5.5e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	32 - 81	2.7e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0032435)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug06G0391100
rosa_samantha	Rh6DG509900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	5
AciI	CCGC	1 cut(s)	306
AcsI	RAATTY	2 cut(s)	208, 482
AcuI	CTGAAG	2 cut(s)	41, 399
AfaI	GTAC	1 cut(s)	400
AfiI	CCNNNNNNNGG	1 cut(s)	222
AgsI	TTSAA	2 cut(s)	58, 457
AjnI	CCWGG	1 cut(s)	172
AluBI	AGCT	3 cut(s)	112, 229, 377
AluI	AGCT	3 cut(s)	112, 229, 377
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	1 cut(s)	37
Ama87I	CYCGRG	1 cut(s)	500
AoxI	GGCC	1 cut(s)	68
ApeKI	GCWGC	2 cut(s)	308, 374
ApoI	RAATTY	2 cut(s)	208, 482
AsuHPI	GGTGA	1 cut(s)	416
AvaI	CYCGRG	1 cut(s)	500
BanII	GRGCYC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	114
BbvI	GCAGC	2 cut(s)	295, 386
BccI	CCATC	2 cut(s)	45, 141
BceAI	ACGGC	2 cut(s)	281, 508
BciT130I	CCWGG	1 cut(s)	174
BciVI	GTATCC	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	37
BfuAI	ACCTGC	1 cut(s)	5
BfuI	GTATCC	1 cut(s)	162
BisI	GCNGC	3 cut(s)	306, 309, 375
BlsI	GCNGC	3 cut(s)	307, 310, 376
Bme1390I	CCNGG	1 cut(s)	174
BmeT110I	CYCGRG	1 cut(s)	500
BmiI	GGNNCC	1 cut(s)	125
BmrFI	CCNGG	1 cut(s)	174
BmsI	GCATC	3 cut(s)	340, 352, 504
BsaBI	GATNNNNATC	2 cut(s)	333, 414
BsaJI	CCNNGG	1 cut(s)	173
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bsc4I	CCNNNNNNNGG	1 cut(s)	222
Bse1I	ACTGG	2 cut(s)	209, 406
Bse8I	GATNNNNATC	2 cut(s)	333, 414
BseBI	CCWGG	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	173
BseGI	GGATG	3 cut(s)	287, 430, 495
BseJI	GATNNNNATC	2 cut(s)	333, 414
BseLI	CCNNNNNNNGG	1 cut(s)	222
BseMII	CTCAG	3 cut(s)	56, 61, 410
BseNI	ACTGG	2 cut(s)	209, 406
BseRI	GAGGAG	1 cut(s)	281
BseXI	GCAGC	2 cut(s)	295, 386
BshFI	GGCC	1 cut(s)	70
BsiHKAI	GWGCWC	1 cut(s)	114
BsiHKCI	CYCGRG	1 cut(s)	500
BsiSI	CCGG	1 cut(s)	162
BslI	CCNNNNNNNGG	1 cut(s)	222
BsmAI	GTCTC	1 cut(s)	37
BsnI	GGCC	1 cut(s)	70
BsoBI	CYCGRG	1 cut(s)	500
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	2 cut(s)	270, 328
BspACI	CCGC	1 cut(s)	306
BspANI	GGCC	1 cut(s)	70
BspCNI	CTCAG	3 cut(s)	57, 60, 411
BspHI	TCATGA	1 cut(s)	346
BspLI	GGNNCC	1 cut(s)	125
BspMI	ACCTGC	1 cut(s)	5
BspQI	GCTCTTC	1 cut(s)	102
BsrI	ACTGG	2 cut(s)	209, 406
BssECI	CCNNGG	1 cut(s)	173
BssMI	GATC	2 cut(s)	270, 328
Bst2UI	CCWGG	1 cut(s)	174
Bst6I	CTCTTC	3 cut(s)	17, 29, 102
BstDEI	CTNAG	4 cut(s)	47, 65, 247, 419
BstENI	CCTNNNNNAGG	1 cut(s)	220
BstF5I	GGATG	3 cut(s)	287, 430, 495
BstKTI	GATC	2 cut(s)	273, 331
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	2 cut(s)	270, 328
BstMWI	GCNNNNNNNGC	2 cut(s)	302, 380
BstNI	CCWGG	1 cut(s)	174
BstSCI	CCNGG	1 cut(s)	172
BstV1I	GCAGC	2 cut(s)	295, 386
BsuI	GTATCC	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	70
BtsCI	GGATG	3 cut(s)	287, 430, 495
BtsIMutI	CAGTG	1 cut(s)	312
BveI	ACCTGC	1 cut(s)	5
CciI	TCATGA	1 cut(s)	346
Csp6I	GTAC	1 cut(s)	399
CviAII	CATG	1 cut(s)	347
CviJI	RGCY	6 cut(s)	70, 112, 124, 161, 229, 377
CviKI_1	RGCY	6 cut(s)	70, 112, 124, 161, 229, 377
CviQI	GTAC	1 cut(s)	399
DdeI	CTNAG	4 cut(s)	47, 65, 247, 419
DpnI	GATC	2 cut(s)	272, 330
DpnII	GATC	2 cut(s)	270, 328
Eam1104I	CTCTTC	3 cut(s)	17, 29, 102
EarI	CTCTTC	3 cut(s)	17, 29, 102
Ecl136II	GAGCTC	1 cut(s)	112
Eco147I	AGGCCT	1 cut(s)	70
Eco24I	GRGCYC	1 cut(s)	114
Eco53kI	GAGCTC	1 cut(s)	112
Eco57I	CTGAAG	2 cut(s)	41, 399
Eco88I	CYCGRG	1 cut(s)	500
EcoICRI	GAGCTC	1 cut(s)	112
EcoNI	CCTNNNNNAGG	1 cut(s)	220
EcoRI	GAATTC	2 cut(s)	208, 482
EcoRII	CCWGG	1 cut(s)	172
EcoT38I	GRGCYC	1 cut(s)	114
FaeI	CATG	1 cut(s)	350
FaiI	YATR	3 cut(s)	348, 393, 446
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FatI	CATG	1 cut(s)	346
Fnu4HI	GCNGC	3 cut(s)	306, 309, 375
FokI	GGATG	3 cut(s)	274, 437, 482
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	3 cut(s)	306, 309, 375
GluI	GCNGC	3 cut(s)	306, 309, 375
HaeIII	GGCC	1 cut(s)	70
HapII	CCGG	1 cut(s)	162
Hin1II	CATG	1 cut(s)	350
HinfI	GANTC	1 cut(s)	45
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	1 cut(s)	416
Hpy188I	TCNGA	5 cut(s)	21, 50, 66, 420, 481
Hpy188III	TCNNGA	1 cut(s)	347
Hpy99I	CGWCG	1 cut(s)	476
HpyAV	CCTTC	1 cut(s)	159
HpyCH4IV	ACGT	2 cut(s)	357, 474
HpyCH4V	TGCA	1 cut(s)	374
HpyF10VI	GCNNNNNNNGC	2 cut(s)	302, 380
HpyF3I	CTNAG	4 cut(s)	47, 65, 247, 419
HpySE526I	ACGT	2 cut(s)	357, 474
Hsp92II	CATG	1 cut(s)	350
Kzo9I	GATC	2 cut(s)	270, 328
LguI	GCTCTTC	1 cut(s)	102
LmnI	GCTCC	1 cut(s)	129
LpnPI	CCDG	7 cut(s)	84, 106, 159, 175, 186, 190, 387
Lsp1109I	GCAGC	2 cut(s)	295, 386
LweI	GCATC	3 cut(s)	340, 352, 504
MaeII	ACGT	2 cut(s)	357, 474
MalI	GATC	2 cut(s)	272, 330
MboI	GATC	2 cut(s)	270, 328
MboII	GAAGA	6 cut(s)	34, 46, 110, 116, 119, 338
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	3 cut(s)	208, 363, 482
MlyI	GAGTC	1 cut(s)	39
MmeI	TCCRAC	1 cut(s)	340
MnlI	CCTC	7 cut(s)	60, 216, 259, 271, 301, 313, 414
MseI	TTAA	1 cut(s)	218
MslI	CAYNNNNRTG	1 cut(s)	348
MspA1I	CMGCKG	2 cut(s)	308, 377
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	174
MvaI	CCWGG	1 cut(s)	174
MwoI	GCNNNNNNNGC	2 cut(s)	302, 380
NdeII	GATC	2 cut(s)	270, 328
NlaIII	CATG	1 cut(s)	350
NlaIV	GGNNCC	1 cut(s)	125
PagI	TCATGA	1 cut(s)	346
PceI	AGGCCT	1 cut(s)	70
PciSI	GCTCTTC	1 cut(s)	102
PcsI	WCGNNNNNNNCGW	1 cut(s)	498
PkrI	GCNGC	3 cut(s)	307, 310, 376
PleI	GAGTC	1 cut(s)	39
PpsI	GAGTC	1 cut(s)	39
Psp124BI	GAGCTC	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	172
PspN4I	GGNNCC	1 cut(s)	125
PvuII	CAGCTG	1 cut(s)	377
RsaI	GTAC	1 cut(s)	400
RsaNI	GTAC	1 cut(s)	399
RseI	CAYNNNNRTG	1 cut(s)	348
SacI	GAGCTC	1 cut(s)	114
SapI	GCTCTTC	1 cut(s)	102
SaqAI	TTAA	1 cut(s)	218
SatI	GCNGC	3 cut(s)	306, 309, 375
Sau3AI	GATC	2 cut(s)	270, 328
SchI	GAGTC	1 cut(s)	39
ScrFI	CCNGG	1 cut(s)	174
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	8 cut(s)	19, 114, 218, 231, 360, 379, 432, 477
SfaNI	GCATC	3 cut(s)	340, 352, 504
SmiMI	CAYNNNNRTG	1 cut(s)	348
Sse9I	AATT	3 cut(s)	208, 363, 482
SseBI	AGGCCT	1 cut(s)	70
SsiI	CCGC	1 cut(s)	306
SstI	GAGCTC	1 cut(s)	114
StuI	AGGCCT	1 cut(s)	70
StyD4I	CCNGG	1 cut(s)	172
TaiI	ACGT	2 cut(s)	360, 477
TaqI	TCGA	1 cut(s)	471
TasI	AATT	3 cut(s)	208, 363, 482
TauI	GCSGC	1 cut(s)	308
Tru1I	TTAA	1 cut(s)	218
Tru9I	TTAA	1 cut(s)	218
TscAI	CASTG	1 cut(s)	319
TseI	GCWGC	2 cut(s)	308, 374
TspDTI	ATGAA	4 cut(s)	117, 204, 426, 433
TspRI	CASTG	1 cut(s)	319
XagI	CCTNNNNNAGG	1 cut(s)	220
XapI	RAATTY	2 cut(s)	208, 482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.