Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0008732

Physical Location & Seq

Genomic Coordinates Forward (+)

59079359 .. 59085211

Gene Structure 5853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG402200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2016 bp

ATGGACGAGGAGAAGCTTCAGAAATTCGTGGAAGCCTACTTGAAGAAGAAAGGGCTCAAGTTAACGGAGCACGCTCTCCAAGAAGAACTTCAGCAATCCACCACCAATACTTGTTCCTCCCCGGTCTCTCAATTCGACCCCGACGTCGTCAGGCAAATCCTCGCCTTCTCCGAATTTGAGGATGGTCCAGCACGTTACCAAGATGGATATGCCAAGTTGAGGTCATGGACTTATACTTCTCTGGATTTGTACAGGCATGAGTTGCTTCATGTTCTTTATCCGGTATTCATTCATTGTTTCATGGATCTGGTTGCTAAAGGTCATATTCAAGAAGCTCGGACATTTTTCAATAGCTTCCGTGAAGACCATGAAATGATGCACCTACGAGATCTACAGAAGTTGGAAGGAGTTCTTTCGCCCTCTCATTTAGAGGAGATGGAATTTGCTCATTCTCTTAGGCAGAGCAAAGTGAACATAAAGATATGTCAGTACTCCTACGAGCTTCTGCTACAGTTTTTGCACAAGTCACAGTCCACCACAATGCTTGGGATTATCAATGAGCATATTAATTTCCAAGTTTCTCCTGGACAACCAAGCTCAATTACTGATGATGCTGAGGCTGTAACACTTACTGGAGGCAGCCAGGAGTCGGCTAATCAAATAAACCAGAAGGAAATTCATTGGGGGTTGCTTGAAGATTCCTTGGAAGAACGCTTGGAAAAGGCCGGGGGAATGGCTTTAGATTCTGAAAAAGCAGAAGGGGAAACCAAAGAAGGGGAGGGTGATGAAAATAAGAAAAAATCAATTGAAGGAGGTAAACAGGGTGCTTCAATCAAAAAGCAAAAAAAGGACAAGGCTGTTAGTGCAACAGTGAAAAGTGCACGCCCCGAAGCAACCACTGTACCTACAGCACCACGAGTCAAACCAGAACTTACTTTGCCAGTAATTCCAACAGAAGTTGAACAGTCTATTCTTGAGGACTTGAGAAACCGTGTACAGTTGAGTAGTGCTGCGTTGCCATCTGTCAGCTTTTATACATTTATCAACACACACAATGGGTTAAACTGTTCATCTATATCCCATGATGGATCCCTGGTTGCTGGTGGATTTTCTGACTCGTCGCTGAAGGTCTGGGATATGGCAAAGATTGGGCAACAATCTGTTGGTTCAATTCTGCAGGGTGAAAATGGTACCGCTTCAAGTGAACAAGTTGCTGGATCAAATGGTGGGAAAAGGCCATATACATTGTTTCAGGGTCATTCAGGGCCAGTTTATTCTGCTACTTTCAATCCTCTGGGTGATTTTATACTTTCCTCTTCAGCAGACTCAACTATTCGGTTGTGGAGCACAAACCTAAATGCCAATCTTGTTTGCTACAAGGGTCATAACTACCCTGTATGGGATGTTCAGTTTAGCCCAGTAGGTCATTATTTTGCCAGTGCATCACATGATAGAACAGCAAGAATTTGGTCTATGGACAGAATACAGCCTCTGAGAATAATGGCAGGGCACTTATCTGATGTTGATTGTGTACAATGGCATTCCAACTGCAACTACATTGCAACTGGTTCTAGTGACAAAACAGTTAGATTATGGGACGTGCAGAGTGGAGAGTGTGTCCGAATATTTATTGGCCACAGGAGTATGATTTTATCTCTTGCAATGTCACCTGATGGTCGGTACATGGCTTCGGGTGATGAAGATGGCTCAATCATGATGTGGGATCTTTCAAGTGGCCGCTGCGTTACACCTTTGATGGGTCATACCTCATGCGTATGGACATTGGCTTTCAGTGGTGAAGGTTCACTCCTTGCTTCTGGATCTGCTGATTGCACGGTAAAATTATGGGACGTAACTGCAAGTACAAAGTTGCCAAAAGCTGAAGAAAAAAGTGGAAGTGCTAGCAGACTGAGGTCATTGAAGACTTTACCAACCAAGTGTACGCCTGTCTACTCCTTACGGTTTTCTCGAAGGAATCTTTTGTTTGCAGCCGGGGTCCTTTCAAAAACTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000228 GO:0000428 GO:0000785 GO:0000790 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005694 GO:0005856 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0015629 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030880 GO:0031248 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0033276 GO:0034641 GO:0034645 GO:0034654 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044798 GO:0046483 GO:0046983 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070461 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902493 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TFIID_NTD2 WD40

Protein Analysis

671

Amino Acids

74.16

Weight (kDa)

6.14

Isoelectric Point (pI)

51.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIID_NTD2	PF04494	61 - 189	6e-45	WD40 associated region in TFIID subunit, NTD2 domain
Beta-prop_WDR3_1st	PF25173	347 - 534	3.1e-25	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	347 - 472	1.5e-11	WDR5 beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	352 - 493	1.5e-09	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	401 - 616	2.3e-12	WDR36/Utp21 first beta-propeller
WD40	PF00400	414 - 449	9.5e-09	WD domain, G-beta repeat
WD40_Gbeta	PF25391	415 - 493	2.3e-06	G protein beta WD-40 repeat protein
Beta-prop_WDR3_2nd	PF25172	415 - 533	3.2e-18	WDR3 second beta-propeller domain
WD40_Prp19	PF24814	415 - 576	2.7e-34	Prp19 WD40 domain
Beta-prop_TEP1_2nd	PF25047	415 - 576	1.5e-15	TEP-1 second beta-propeller
Beta-prop_THOC3	PF25174	415 - 494	2.9e-15	THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	416 - 485	3.4e-07	WDR36/Utp21 second beta-propeller domain
EIF3I	PF24805	416 - 493	1.7e-10	EIF3I
Beta-prop_IFT122_1st	PF23381	417 - 561	8.8e-07	IFT122 first beta-propeller
Beta-prop_EML_2	PF23414	423 - 521	4.7e-07	Echinoderm microtubule-associated protein second beta-propeller
WDR55	PF24796	424 - 580	1.8e-14	WDR55
WD40	PF00400	458 - 491	1e-08	WD domain, G-beta repeat
Beta-prop_WDR5	PF25175	460 - 623	3.8e-47	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	462 - 541	9.1e-20	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	464 - 627	4.3e-27	CDC20/Fizzy WD40 domain
WDR90_beta-prop_4th	PF23342	466 - 582	7.3e-08	WDR90, 4th beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	466 - 576	1.3e-14	MABP1/WDR62 second WD40 domain
Beta-prop_WDR19_1st	PF23389	474 - 625	4.2e-09	WDR19 first beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	478 - 581	4.2e-13	WDR90/POC16, second beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	484 - 565	5e-10	WDR36/Utp21 second beta-propeller domain
Beta-prop_THOC3	PF25174	486 - 583	9e-23	THOC3 beta-propeller domain
WD40	PF00400	496 - 533	3.8e-10	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	498 - 583	3.1e-10	CAF1B/HIR1 beta-propeller domain
WD40_Gbeta	PF25391	499 - 624	1.6e-21	G protein beta WD-40 repeat protein
WD40_WDHD1_1st	PF24817	506 - 583	8.5e-15	WDHD1 first WD40 domain
Beta-prop_IFT140_1st	PF23383	506 - 577	1.2e-07	IFT140 first beta-propeller
Beta-prop_WDR3_2nd	PF25172	510 - 619	5.5e-20	WDR3 second beta-propeller domain
Beta-prop_EML_2	PF23414	516 - 636	1.2e-15	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_SCAP	PF24017	520 - 628	6.8e-09	SCAP Beta-propeller
Beta-prop_WDR3_1st	PF25173	528 - 632	1.8e-26	WDR3 first beta-propeller domain
WD40	PF00400	537 - 575	3.3e-10	WD domain, G-beta repeat
Beta-prop_TEP1_2nd	PF25047	539 - 626	1.2e-09	TEP-1 second beta-propeller
Beta-prop_THOC3	PF25174	542 - 630	3.7e-19	THOC3 beta-propeller domain
WD40_MABP1-WDR62_1st	PF24780	542 - 620	6.3e-06	MABP1/WDR62 first WD40 domain
EIF3I	PF24805	545 - 631	1.7e-07	EIF3I
Beta-prop_EML	PF23409	548 - 621	3.8e-06	Echinoderm microtubule-associated protein first beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	551 - 617	2.8e-07	MABP1/WDR62 second WD40 domain
WD40_Prp19	PF24814	553 - 624	5.1e-15	Prp19 WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	567 - 622	2.5e-06	WDR36/Utp21 second beta-propeller domain
WD40	PF00400	579 - 617	5.5e-11	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0008732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25150 AT5G25150
fragaria_vesca	FvH4_2g41020 FvH4_2g41020 FvH4_2g41020 FvH4_2g41020 FvH4_2g41020
malus_domestica	MD00G1143300.v1.1 MD15G1039100.v1.1
prunus_persica	Prupe.1G392800_v2.0.a1 Prupe.1G392800_v2.0.a1
pyrus_communis	pycom08g04780
rosa_chinensis	RchiOBHm_Chr6g0299541
rosa_laevigata	RLG00000011417
rosa_multiflora	Rmu_sc0004064.1_g000008
rosa_roxburghii	Rroxscaffold_7G00168570
rosa_rugosa	Rorug06G0289700 Rorug06G0289800 Rorug06G0289900 Rorug06G0289900
rosa_samantha	Rh6AG401100 Rh6DG402200
rosa_wichuraiana	Rw6G035100

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	143
AatII	GACGTC	1 cut(s)	147
Acc65I	GGTACC	1 cut(s)	1190
AccB1I	GGYRCC	1 cut(s)	1190
AccI	GTMKAC	1 cut(s)	1950
AciI	CCGC	2 cut(s)	1194, 1738
AclWI	GGATC	6 cut(s)	312, 1083, 1096, 1225, 1731, 1828
AcoI	YGGCCR	2 cut(s)	1633, 1735
AcsI	RAATTY	5 cut(s)	23, 173, 440, 675, 1464
AcuI	CTGAAG	4 cut(s)	74, 1145, 1302, 1902
AcyI	GRCGYC	1 cut(s)	144
AfaI	GTAC	9 cut(s)	251, 491, 903, 996, 1192, 1533, 1682, 1864, 1942
AfiI	CCNNNNNNNGG	5 cut(s)	219, 649, 774, 1399, 1757
AjiI	CACGTC	1 cut(s)	1600
AjnI	CCWGG	3 cut(s)	583, 642, 1092
AjuI	GAANNNNNNNTTGG	2 cut(s)	72, 104
AluBI	AGCT	7 cut(s)	16, 335, 354, 502, 597, 1029, 1880
AluI	AGCT	7 cut(s)	16, 335, 354, 502, 597, 1029, 1880
Alw21I	GWGCWC	3 cut(s)	72, 883, 1349
Alw26I	GTCTC	1 cut(s)	130
Alw44I	GTGCAC	1 cut(s)	879
AlwI	GGATC	6 cut(s)	312, 1083, 1096, 1225, 1731, 1828
AlwNI	CAGNNNCTG	1 cut(s)	1492
AoxI	GGCC	5 cut(s)	723, 1235, 1265, 1633, 1735
ApaLI	GTGCAC	1 cut(s)	879
ApeKI	GCWGC	4 cut(s)	639, 1010, 1740, 1988
ApoI	RAATTY	5 cut(s)	23, 173, 440, 675, 1464
AseI	ATTAAT	1 cut(s)	567
Asp700I	GAANNNNTTC	2 cut(s)	87, 408
Asp718I	GGTACC	1 cut(s)	1190
AspS9I	GGNCC	3 cut(s)	185, 1265, 1996
AsuC2I	CCSGG	3 cut(s)	122, 727, 1993
AsuHPI	GGTGA	6 cut(s)	794, 1193, 1310, 1659, 1706, 1808
AsuNHI	GCTAGC	1 cut(s)	1901
AvaII	GGWCC	2 cut(s)	185, 1996
BaeGI	GKGCMC	2 cut(s)	883, 1512
BaeI	ACNNNNGTAYC	2 cut(s)	885, 918
BalI	TGGCCA	1 cut(s)	1635
BamHI	GGATCC	1 cut(s)	1088
BanI	GGYRCC	1 cut(s)	1190
BanII	GRGCYC	1 cut(s)	57
BauI	CACGAG	1 cut(s)	915
BbsI	GAAGAC	2 cut(s)	369, 1928
Bbv12I	GWGCWC	3 cut(s)	72, 883, 1349
BbvCI	CCTCAGC	1 cut(s)	615
BbvI	GCAGC	4 cut(s)	651, 997, 1727, 2000
BccI	CCATC	8 cut(s)	176, 197, 430, 1027, 1079, 1667, 1697, 1750
BciT130I	CCWGG	3 cut(s)	585, 644, 1094
BcnI	CCSGG	3 cut(s)	122, 727, 1993
BcoDI	GTCTC	1 cut(s)	130
BfaI	CTAG	2 cut(s)	1572, 1902
BfmI	CTRYAG	4 cut(s)	392, 509, 906, 1175
BglII	AGATCT	1 cut(s)	388
BisI	GCNGC	5 cut(s)	640, 1011, 1738, 1741, 1989
BlsI	GCNGC	5 cut(s)	641, 1012, 1739, 1742, 1990
BmcAI	AGTACT	1 cut(s)	491
Bme1390I	CCNGG	6 cut(s)	122, 585, 644, 727, 1094, 1993
Bme18I	GGWCC	2 cut(s)	185, 1996
BmgBI	CACGTC	1 cut(s)	1600
BmgT120I	GGNCC	3 cut(s)	185, 1265, 1996
BmiI	GGNNCC	3 cut(s)	1090, 1192, 1997
BmrFI	CCNGG	6 cut(s)	122, 585, 644, 727, 1094, 1993
BmrI	ACTGGG	1 cut(s)	1412
BmsI	GCATC	3 cut(s)	366, 601, 1451
BmtI	GCTAGC	1 cut(s)	1905
BmuI	ACTGGG	1 cut(s)	1412
BoxI	GACNNNNGTC	1 cut(s)	1912
BpiI	GAAGAC	2 cut(s)	369, 1928
BpmI	CTGGAG	1 cut(s)	654
Bpu10I	CCTNAGC	1 cut(s)	615
BpuEI	CTTGAG	3 cut(s)	41, 995, 1003
BpuMI	CCSGG	3 cut(s)	122, 727, 1993
BsaHI	GRCGYC	1 cut(s)	144
BsaI	GGTCTC	1 cut(s)	130
BsaJI	CCNNGG	5 cut(s)	120, 702, 726, 1092, 1992
BsaWI	WCCGGW	1 cut(s)	280
BsaXI	ACNNNNNCTCC	2 cut(s)	1602, 1632
Bsc4I	CCNNNNNNNGG	5 cut(s)	219, 649, 774, 1399, 1757
Bse1I	ACTGG	6 cut(s)	637, 941, 1268, 1418, 1437, 1570
Bse3DI	GCAATG	2 cut(s)	1557, 1668
BseBI	CCWGG	3 cut(s)	585, 644, 1094
BseDI	CCNNGG	5 cut(s)	120, 702, 726, 1092, 1992
BseGI	GGATG	2 cut(s)	187, 1408
BseLI	CCNNNNNNNGG	5 cut(s)	219, 649, 774, 1399, 1757
BseMI	GCAATG	2 cut(s)	1557, 1668
BseMII	CTCAG	3 cut(s)	606, 1484, 1901
BseNI	ACTGG	6 cut(s)	637, 941, 1268, 1418, 1437, 1570
BseRI	GAGGAG	2 cut(s)	23, 446
BseSI	GKGCMC	2 cut(s)	883, 1512
BseXI	GCAGC	4 cut(s)	651, 997, 1727, 2000
BsgI	GTGCAG	1 cut(s)	1622
BshFI	GGCC	5 cut(s)	725, 1237, 1267, 1635, 1737
BshNI	GGYRCC	1 cut(s)	1190
BsiHKAI	GWGCWC	3 cut(s)	72, 883, 1349
BsiSI	CCGG	4 cut(s)	122, 281, 726, 1992
BslFI	GGGAC	2 cut(s)	1610, 1862
BslI	CCNNNNNNNGG	5 cut(s)	219, 649, 774, 1399, 1757
BsmAI	GTCTC	1 cut(s)	130
BsmFI	GGGAC	2 cut(s)	1610, 1862
BsmI	GAATGC	1 cut(s)	1540
BsnI	GGCC	5 cut(s)	725, 1237, 1267, 1635, 1737
Bso31I	GGTCTC	1 cut(s)	130
Bsp1286I	GDGCHC	5 cut(s)	57, 72, 883, 1349, 1512
Bsp1407I	TGTACA	3 cut(s)	249, 994, 1531
Bsp143I	GATC	6 cut(s)	304, 388, 1088, 1217, 1723, 1820
BspACI	CCGC	2 cut(s)	1194, 1738
BspANI	GGCC	5 cut(s)	725, 1237, 1267, 1635, 1737
BspCNI	CTCAG	3 cut(s)	607, 1485, 1902
BspHI	TCATGA	1 cut(s)	1713
BspLI	GGNNCC	3 cut(s)	1090, 1192, 1997
BspMAI	CTGCAG	1 cut(s)	1179
BspOI	GCTAGC	1 cut(s)	1905
BspPI	GGATC	6 cut(s)	312, 1083, 1096, 1225, 1731, 1828
BspT107I	GGYRCC	1 cut(s)	1190
BspTNI	GGTCTC	1 cut(s)	130
BsrDI	GCAATG	2 cut(s)	1557, 1668
BsrGI	TGTACA	3 cut(s)	249, 994, 1531
BsrI	ACTGG	6 cut(s)	637, 941, 1268, 1418, 1437, 1570
BssECI	CCNNGG	5 cut(s)	120, 702, 726, 1092, 1992
BssMI	GATC	6 cut(s)	304, 388, 1088, 1217, 1723, 1820
BssNI	GRCGYC	1 cut(s)	144
BssSI	CACGAG	1 cut(s)	915
BssT1I	CCWWGG	1 cut(s)	702
Bst2BI	CACGAG	1 cut(s)	915
Bst2UI	CCWGG	3 cut(s)	585, 644, 1094
Bst6I	CTCTTC	1 cut(s)	1321
BstACI	GRCGYC	1 cut(s)	144
BstAPI	GCANNNNNTGC	1 cut(s)	262
BstAUI	TGTACA	3 cut(s)	249, 994, 1531
BstC8I	GCNNGC	3 cut(s)	72, 883, 1903
BstDEI	CTNAG	4 cut(s)	455, 615, 1493, 1910
BstF5I	GGATG	2 cut(s)	187, 1408
BstKTI	GATC	6 cut(s)	307, 391, 1091, 1220, 1726, 1823
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	6 cut(s)	304, 388, 1088, 1217, 1723, 1820
BstMWI	GCNNNNNNNGC	2 cut(s)	262, 863
BstNI	CCWGG	3 cut(s)	585, 644, 1094
BstPAI	GACNNNNGTC	1 cut(s)	1912
BstSCI	CCNGG	6 cut(s)	120, 583, 642, 725, 1092, 1991
BstSFI	CTRYAG	4 cut(s)	392, 509, 906, 1175
BstSLI	GKGCMC	2 cut(s)	883, 1512
BstV1I	GCAGC	4 cut(s)	651, 997, 1727, 2000
BstV2I	GAAGAC	2 cut(s)	369, 1928
BstX2I	RGATCY	5 cut(s)	304, 388, 1088, 1723, 1820
BstYI	RGATCY	5 cut(s)	304, 388, 1088, 1723, 1820
BsuRI	GGCC	5 cut(s)	725, 1237, 1267, 1635, 1737
BtrI	CACGTC	1 cut(s)	1600
BtsCI	GGATG	2 cut(s)	187, 1408
BtsIMutI	CAGTG	4 cut(s)	876, 897, 1444, 1798
Cac8I	GCNNGC	3 cut(s)	72, 883, 1903
CaiI	CAGNNNCTG	1 cut(s)	1492
CciI	TCATGA	1 cut(s)	1713
Cfr13I	GGNCC	3 cut(s)	185, 1265, 1996
Csp6I	GTAC	9 cut(s)	250, 490, 902, 995, 1191, 1532, 1681, 1863, 1941
CspCI	CAANNNNNGTGG	2 cut(s)	526, 561
CviQI	GTAC	9 cut(s)	250, 490, 902, 995, 1191, 1532, 1681, 1863, 1941
DdeI	CTNAG	4 cut(s)	455, 615, 1493, 1910
DpnI	GATC	6 cut(s)	306, 390, 1090, 1219, 1725, 1822
DpnII	GATC	6 cut(s)	304, 388, 1088, 1217, 1723, 1820
DrdI	GACNNNNNNGTC	1 cut(s)	143
DseDI	GACNNNNNNGTC	1 cut(s)	143
EaeI	YGGCCR	2 cut(s)	1633, 1735
Eam1104I	CTCTTC	1 cut(s)	1321
EarI	CTCTTC	1 cut(s)	1321
Eco130I	CCWWGG	1 cut(s)	702
Eco24I	GRGCYC	1 cut(s)	57
Eco31I	GGTCTC	1 cut(s)	130
Eco47I	GGWCC	2 cut(s)	185, 1996
Eco57I	CTGAAG	4 cut(s)	74, 1145, 1302, 1902
EcoO109I	RGGNCCY	1 cut(s)	1996
EcoRII	CCWGG	3 cut(s)	583, 642, 1092
EcoT14I	CCWWGG	1 cut(s)	702
EcoT38I	GRGCYC	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	702
FalI	AAGNNNNNCTT	4 cut(s)	72, 104, 396, 428
FaqI	GGGAC	2 cut(s)	1610, 1862
FblI	GTMKAC	1 cut(s)	1950
Fnu4HI	GCNGC	5 cut(s)	640, 1011, 1738, 1741, 1989
FokI	GGATG	2 cut(s)	194, 1415
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	5 cut(s)	640, 1011, 1738, 1741, 1989
FspBI	CTAG	2 cut(s)	1572, 1902
GluI	GCNGC	5 cut(s)	640, 1011, 1738, 1741, 1989
GsuI	CTGGAG	1 cut(s)	654
HaeIII	GGCC	5 cut(s)	725, 1237, 1267, 1635, 1737
HapII	CCGG	4 cut(s)	122, 281, 726, 1992
Hin1I	GRCGYC	1 cut(s)	144
HincII	GTYRAC	1 cut(s)	63
HindII	GTYRAC	1 cut(s)	63
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	7 cut(s)	647, 698, 743, 918, 1115, 1325, 1975
HpaI	GTTAAC	1 cut(s)	63
HpaII	CCGG	4 cut(s)	122, 281, 726, 1992
HphI	GGTGA	6 cut(s)	794, 1193, 1310, 1659, 1706, 1808
Hpy188I	TCNGA	8 cut(s)	21, 172, 339, 748, 1114, 1494, 1519, 1622
Hpy188III	TCNNGA	6 cut(s)	242, 329, 974, 1714, 1818, 1968
Hpy99I	CGWCG	3 cut(s)	146, 149, 1123
HpyAV	CCTTC	9 cut(s)	175, 398, 664, 752, 767, 803, 1120, 1793, 1965
HpyCH4IV	ACGT	4 cut(s)	144, 193, 1599, 1851
HpyF10VI	GCNNNNNNNGC	2 cut(s)	262, 863
HpyF3I	CTNAG	4 cut(s)	455, 615, 1493, 1910
HpySE526I	ACGT	4 cut(s)	144, 193, 1599, 1851
Hsp92I	GRCGYC	1 cut(s)	144
KpnI	GGTACC	1 cut(s)	1194
KspAI	GTTAAC	1 cut(s)	63
Kzo9I	GATC	6 cut(s)	304, 388, 1088, 1217, 1723, 1820
LmnI	GCTCC	2 cut(s)	67, 1344
Lsp1109I	GCAGC	4 cut(s)	651, 997, 1727, 2000
LweI	GCATC	3 cut(s)	366, 601, 1451
MaeI	CTAG	2 cut(s)	1572, 1902
MaeII	ACGT	4 cut(s)	144, 193, 1599, 1851
MaeIII	GTNAC	7 cut(s)	194, 525, 622, 1574, 1665, 1744, 1852
MalI	GATC	6 cut(s)	306, 390, 1090, 1219, 1725, 1822
MboI	GATC	6 cut(s)	304, 388, 1088, 1217, 1723, 1820
MfeI	CAATTG	1 cut(s)	804
MflI	RGATCY	5 cut(s)	304, 388, 1088, 1723, 1820
MhlI	GDGCHC	5 cut(s)	57, 72, 883, 1349, 1512
MlsI	TGGCCA	1 cut(s)	1635
MluNI	TGGCCA	1 cut(s)	1635
MlyI	GAGTC	4 cut(s)	656, 927, 1109, 1319
MmeI	TCCRAC	3 cut(s)	381, 974, 1569
Mox20I	TGGCCA	1 cut(s)	1635
MroXI	GAANNNNTTC	2 cut(s)	87, 408
MscI	TGGCCA	1 cut(s)	1635
MseI	TTAA	3 cut(s)	62, 567, 1061
MslI	CAYNNNNRTG	2 cut(s)	539, 1774
Msp20I	TGGCCA	1 cut(s)	1635
MspA1I	CMGCKG	1 cut(s)	1740
MspI	CCGG	4 cut(s)	122, 281, 726, 1992
MspR9I	CCNGG	6 cut(s)	122, 585, 644, 727, 1094, 1993
MunI	CAATTG	1 cut(s)	804
Mva1269I	GAATGC	1 cut(s)	1540
MvaI	CCWGG	3 cut(s)	585, 644, 1094
MwoI	GCNNNNNNNGC	2 cut(s)	262, 863
NciI	CCSGG	3 cut(s)	122, 727, 1993
NdeII	GATC	6 cut(s)	304, 388, 1088, 1217, 1723, 1820
NheI	GCTAGC	1 cut(s)	1901
NlaIV	GGNNCC	3 cut(s)	1090, 1192, 1997
NmuCI	GTSAC	3 cut(s)	525, 1574, 1665
PagI	TCATGA	1 cut(s)	1713
PcsI	WCGNNNNNNNCGW	3 cut(s)	141, 168, 1966
PctI	GAATGC	1 cut(s)	1540
PdmI	GAANNNNTTC	2 cut(s)	87, 408
PfeI	GAWTC	3 cut(s)	698, 743, 1975
PflFI	GACNNNGTC	1 cut(s)	146
PfoI	TCCNGGA	1 cut(s)	583
PkrI	GCNGC	5 cut(s)	641, 1012, 1739, 1742, 1990
PleI	GAGTC	4 cut(s)	655, 926, 1109, 1319
PpsI	GAGTC	4 cut(s)	655, 926, 1109, 1319
PpuMI	RGGWCCY	1 cut(s)	1996
PshAI	GACNNNNGTC	1 cut(s)	1912
PshBI	ATTAAT	1 cut(s)	567
Psp5II	RGGWCCY	1 cut(s)	1996
Psp6I	CCWGG	3 cut(s)	583, 642, 1092
PspGI	CCWGG	3 cut(s)	583, 642, 1092
PspN4I	GGNNCC	3 cut(s)	1090, 1192, 1997
PspPI	GGNCC	3 cut(s)	185, 1265, 1996
PspPPI	RGGWCCY	1 cut(s)	1996
PsrI	GAACNNNNNNTAC	2 cut(s)	1389, 1421
PstI	CTGCAG	1 cut(s)	1179
PstNI	CAGNNNCTG	1 cut(s)	1492
PsuI	RGATCY	5 cut(s)	304, 388, 1088, 1723, 1820
PsyI	GACNNNGTC	1 cut(s)	146
RsaI	GTAC	9 cut(s)	251, 491, 903, 996, 1192, 1533, 1682, 1864, 1942
RsaNI	GTAC	9 cut(s)	250, 490, 902, 995, 1191, 1532, 1681, 1863, 1941
RseI	CAYNNNNRTG	2 cut(s)	539, 1774
SaqAI	TTAA	3 cut(s)	62, 567, 1061
SatI	GCNGC	5 cut(s)	640, 1011, 1738, 1741, 1989
Sau3AI	GATC	6 cut(s)	304, 388, 1088, 1217, 1723, 1820
Sau96I	GGNCC	3 cut(s)	185, 1265, 1996
ScaI	AGTACT	1 cut(s)	491
SchI	GAGTC	4 cut(s)	656, 927, 1109, 1319
ScrFI	CCNGG	6 cut(s)	122, 585, 644, 727, 1094, 1993
SduI	GDGCHC	5 cut(s)	57, 72, 883, 1349, 1512
SfaNI	GCATC	3 cut(s)	366, 601, 1451
SfcI	CTRYAG	4 cut(s)	392, 509, 906, 1175
SinI	GGWCC	2 cut(s)	185, 1996
SmiMI	CAYNNNNRTG	2 cut(s)	539, 1774
SmlI	CTYRAG	3 cut(s)	56, 974, 982
SmoI	CTYRAG	3 cut(s)	56, 974, 982
SsiI	CCGC	2 cut(s)	1194, 1738
SspI	AATATT	1 cut(s)	1626
SspMI	CTAG	2 cut(s)	1572, 1902
StyD4I	CCNGG	6 cut(s)	120, 583, 642, 725, 1092, 1991
StyI	CCWWGG	1 cut(s)	702
TaiI	ACGT	4 cut(s)	147, 196, 1602, 1854
TaqI	TCGA	2 cut(s)	135, 1969
TatI	WGTACW	5 cut(s)	249, 489, 994, 1531, 1862
TauI	GCSGC	1 cut(s)	1740
TfiI	GAWTC	3 cut(s)	698, 743, 1975
Tru1I	TTAA	3 cut(s)	62, 567, 1061
Tru9I	TTAA	3 cut(s)	62, 567, 1061
TscAI	CASTG	4 cut(s)	876, 904, 1444, 1798
TseFI	GTSAC	3 cut(s)	525, 1574, 1665
TseI	GCWGC	4 cut(s)	639, 1010, 1740, 1988
Tsp45I	GTSAC	3 cut(s)	525, 1574, 1665
TspDTI	ATGAA	9 cut(s)	257, 277, 281, 289, 384, 668, 801, 1059, 1713
TspGWI	ACGGA	2 cut(s)	80, 347
TspRI	CASTG	4 cut(s)	876, 904, 1444, 1798
Tth111I	GACNNNGTC	1 cut(s)	146
VneI	GTGCAC	1 cut(s)	879
VpaK11BI	GGWCC	2 cut(s)	185, 1996
VspI	ATTAAT	1 cut(s)	567
XapI	RAATTY	5 cut(s)	23, 173, 440, 675, 1464
XcmI	CCANNNNNNNNNTGG	1 cut(s)	581
XmiI	GTMKAC	1 cut(s)	1950
XmnI	GAANNNNTTC	2 cut(s)	87, 408
XspI	CTAG	2 cut(s)	1572, 1902
ZraI	GACGTC	1 cut(s)	145
ZrmI	AGTACT	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.