Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0009445

Physical Location & Seq

Genomic Coordinates Forward (+)

34188699 .. 34191574

Gene Structure 2876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG205000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGATTAACACCCGAACAGTTGATGGAGTCCATAAAATAGAGGGTCAGGTTAACAAGTACACTCCAGAAGAGCTCTTGCTTATGAAGACCCAGGATATTGGATATGTACTGCAGAAAGTACAGAGTGAGAAAAAGAAAATTGAAAAGATGACTGCAACTCTGCATTCACTTGATAATCGGCCTTCAAGCAGACACGTATACTTTGCTGAAGACAGGGAAGAGGCCAAAGAGCTTCAGTCACGTAGTTCAAGAGGGGAAATATTGCTCGGTTCTGAGAATATTCCAGATCGTATTAAAAGGAAAACAGCGGCTTCATACAGGGAGCTTGAAGCAAGGAGAACGAGAGTCCAAGATCTGGAGAAAATATATATGGATATGGCAATGCAGAAGGAATTACAGAAAAAGGGCAAAAAACGCAAACTCCGTGAAGATGAGATGGTAAATCCAACATCCAAACCTGTATTCAAGTGGCGGGCAGAGCGAAAGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030684 GO:0031974 GO:0031981 GO:0032040 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Utp11

Protein Analysis

163

Amino Acids

19.28

Weight (kDa)

9.86

Isoelectric Point (pI)

62.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Utp11	PF03998	1 - 163	9.4e-25	Utp11 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60360
fragaria_vesca	FvH4_3g21660
malus_domestica	MD11G1228500.v1.1 MD11G1228700.v1.1 MD15G1425000.v1.1
prunus_persica	Prupe.4G200900_v2.0.a1 Prupe.4G200900_v2.0.a1 Prupe.4G200900_v2.0.a1 Prupe.4G200900_v2.0.a1 Prupe.8G106900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0037141
rosa_laevigata	RLG00000033753
rosa_multiflora	Rmu_ssc0000448.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043840
rosa_rugosa	Rorug05G0161000 Rorug05G0161100
rosa_samantha	Rh5AG252700 Rh5BG254600 Rh5CG287100 Rh5DG263000 Rh6CG205000
rosa_wichuraiana	Rw5G023320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	355
AccI	GTMKAC	1 cut(s)	198
AciI	CCGC	2 cut(s)	308, 472
AcuI	CTGAAG	2 cut(s)	218, 228
AfaI	GTAC	3 cut(s)	59, 108, 120
AfiI	CCNNNNNNNGG	1 cut(s)	355
AflIII	ACRYGT	1 cut(s)	193
AgsI	TTSAA	5 cut(s)	143, 186, 249, 329, 466
AjnI	CCWGG	1 cut(s)	90
AjuI	GAANNNNNNNTTGG	2 cut(s)	446, 478
AluBI	AGCT	3 cut(s)	73, 232, 325
AluI	AGCT	3 cut(s)	73, 232, 325
Alw21I	GWGCWC	1 cut(s)	75
AoxI	GGCC	2 cut(s)	179, 222
BanII	GRGCYC	1 cut(s)	75
BbsI	GAAGAC	2 cut(s)	92, 216
Bbv12I	GWGCWC	1 cut(s)	75
BccI	CCATC	2 cut(s)	17, 430
BciT130I	CCWGG	1 cut(s)	92
BfmI	CTRYAG	1 cut(s)	110
BglII	AGATCT	1 cut(s)	352
BisI	GCNGC	1 cut(s)	309
BlsI	GCNGC	1 cut(s)	310
Bme1390I	CCNGG	1 cut(s)	92
BmrFI	CCNGG	1 cut(s)	92
BpiI	GAAGAC	2 cut(s)	92, 216
BpmI	CTGGAG	2 cut(s)	48, 377
BsaAI	YACGTR	2 cut(s)	196, 242
BsaJI	CCNNGG	1 cut(s)	90
BsaXI	ACNNNNNCTCC	2 cut(s)	405, 435
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
Bse3DI	GCAATG	1 cut(s)	387
BseBI	CCWGG	1 cut(s)	92
BseDI	CCNNGG	1 cut(s)	90
BseGI	GGATG	1 cut(s)	449
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseMI	GCAATG	1 cut(s)	387
BseMII	CTCAG	1 cut(s)	264
BshFI	GGCC	2 cut(s)	181, 224
BsiHKAI	GWGCWC	1 cut(s)	75
BslI	CCNNNNNNNGG	1 cut(s)	355
BsmI	GAATGC	1 cut(s)	163
BsnI	GGCC	2 cut(s)	181, 224
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	2 cut(s)	286, 352
BspACI	CCGC	2 cut(s)	308, 472
BspANI	GGCC	2 cut(s)	181, 224
BspCNI	CTCAG	1 cut(s)	265
BspMAI	CTGCAG	1 cut(s)	114
BspQI	GCTCTTC	1 cut(s)	63
BsrDI	GCAATG	1 cut(s)	387
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	2 cut(s)	286, 352
BssNAI	GTATAC	1 cut(s)	199
Bst1107I	GTATAC	1 cut(s)	199
Bst2UI	CCWGG	1 cut(s)	92
Bst4CI	ACNGT	1 cut(s)	19
Bst6I	CTCTTC	2 cut(s)	63, 213
BstBAI	YACGTR	2 cut(s)	196, 242
BstC8I	GCNNGC	1 cut(s)	474
BstDEI	CTNAG	1 cut(s)	273
BstF5I	GGATG	1 cut(s)	449
BstKTI	GATC	2 cut(s)	289, 355
BstMBI	GATC	2 cut(s)	286, 352
BstMWI	GCNNNNNNNGC	2 cut(s)	414, 478
BstNI	CCWGG	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	90
BstSFI	CTRYAG	1 cut(s)	110
BstV2I	GAAGAC	2 cut(s)	92, 216
BstX2I	RGATCY	1 cut(s)	352
BstXI	CCANNNNNNTGG	1 cut(s)	98
BstYI	RGATCY	1 cut(s)	352
BstZ17I	GTATAC	1 cut(s)	199
BsuRI	GGCC	2 cut(s)	181, 224
BtsCI	GGATG	1 cut(s)	449
Cac8I	GCNNGC	1 cut(s)	474
Csp6I	GTAC	3 cut(s)	58, 107, 119
CviJI	RGCY	6 cut(s)	73, 181, 224, 232, 311, 325
CviKI_1	RGCY	6 cut(s)	73, 181, 224, 232, 311, 325
CviQI	GTAC	3 cut(s)	58, 107, 119
DdeI	CTNAG	1 cut(s)	273
DpnI	GATC	2 cut(s)	288, 354
DpnII	GATC	2 cut(s)	286, 352
Eam1104I	CTCTTC	2 cut(s)	63, 213
EarI	CTCTTC	2 cut(s)	63, 213
Ecl136II	GAGCTC	1 cut(s)	73
Eco24I	GRGCYC	1 cut(s)	75
Eco53kI	GAGCTC	1 cut(s)	73
Eco57I	CTGAAG	2 cut(s)	218, 228
EcoICRI	GAGCTC	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	90
EcoT38I	GRGCYC	1 cut(s)	75
FaiI	YATR	9 cut(s)	33, 83, 105, 199, 316, 367, 369, 371, 377
FauI	CCCGC	1 cut(s)	465
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	1 cut(s)	309
FokI	GGATG	1 cut(s)	436
FriOI	GRGCYC	1 cut(s)	75
Fsp4HI	GCNGC	1 cut(s)	309
GluI	GCNGC	1 cut(s)	309
GsuI	CTGGAG	2 cut(s)	48, 377
HaeIII	GGCC	2 cut(s)	181, 224
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
HinfI	GANTC	2 cut(s)	27, 345
HpaI	GTTAAC	1 cut(s)	52
Hpy166II	GTNNAC	3 cut(s)	52, 60, 199
Hpy188I	TCNGA	1 cut(s)	274
Hpy188III	TCNNGA	4 cut(s)	65, 249, 284, 356
Hpy8I	GTNNAC	3 cut(s)	52, 60, 199
HpyAV	CCTTC	2 cut(s)	192, 382
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4IV	ACGT	2 cut(s)	195, 241
HpyCH4V	TGCA	4 cut(s)	112, 155, 163, 385
HpyF10VI	GCNNNNNNNGC	2 cut(s)	414, 478
HpyF3I	CTNAG	1 cut(s)	273
HpySE526I	ACGT	2 cut(s)	195, 241
KspAI	GTTAAC	1 cut(s)	52
Kzo9I	GATC	2 cut(s)	286, 352
LguI	GCTCTTC	1 cut(s)	63
LmnI	GCTCC	1 cut(s)	322
LpnPI	CCDG	9 cut(s)	32, 77, 78, 104, 199, 297, 304, 341, 471
MaeII	ACGT	2 cut(s)	195, 241
MaeIII	GTNAC	1 cut(s)	237
MalI	GATC	2 cut(s)	288, 354
MboI	GATC	2 cut(s)	286, 352
MboII	GAAGA	5 cut(s)	80, 97, 221, 230, 440
MflI	RGATCY	1 cut(s)	352
MhlI	GDGCHC	1 cut(s)	75
MluCI	AATT	2 cut(s)	138, 392
MlyI	GAGTC	2 cut(s)	36, 354
MmeI	TCCRAC	1 cut(s)	470
MnlI	CCTC	3 cut(s)	34, 214, 245
MseI	TTAA	3 cut(s)	6, 51, 294
MspA1I	CMGCKG	1 cut(s)	308
MspR9I	CCNGG	1 cut(s)	92
Mva1269I	GAATGC	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	92
MwoI	GCNNNNNNNGC	2 cut(s)	414, 478
NdeII	GATC	2 cut(s)	286, 352
NmuCI	GTSAC	1 cut(s)	237
PciSI	GCTCTTC	1 cut(s)	63
PcsI	WCGNNNNNNNCGW	1 cut(s)	421
PctI	GAATGC	1 cut(s)	163
PflMI	CCANNNNNTGG	1 cut(s)	355
PkrI	GCNGC	1 cut(s)	310
PleI	GAGTC	2 cut(s)	35, 353
PpsI	GAGTC	2 cut(s)	35, 353
Ppu21I	YACGTR	2 cut(s)	196, 242
Psp124BI	GAGCTC	1 cut(s)	75
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PstI	CTGCAG	1 cut(s)	114
PsuI	RGATCY	1 cut(s)	352
RsaI	GTAC	3 cut(s)	59, 108, 120
RsaNI	GTAC	3 cut(s)	58, 107, 119
SacI	GAGCTC	1 cut(s)	75
SapI	GCTCTTC	1 cut(s)	63
SaqAI	TTAA	3 cut(s)	6, 51, 294
SatI	GCNGC	1 cut(s)	309
Sau3AI	GATC	2 cut(s)	286, 352
SchI	GAGTC	2 cut(s)	36, 354
ScrFI	CCNGG	1 cut(s)	92
SduI	GDGCHC	1 cut(s)	75
SetI	ASST	7 cut(s)	51, 75, 198, 234, 244, 327, 460
SfcI	CTRYAG	1 cut(s)	110
Sse9I	AATT	2 cut(s)	138, 392
SsiI	CCGC	2 cut(s)	308, 472
SspI	AATATT	2 cut(s)	261, 280
SstI	GAGCTC	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	90
TaaI	ACNGT	1 cut(s)	19
TaiI	ACGT	2 cut(s)	198, 244
TasI	AATT	2 cut(s)	138, 392
TatI	WGTACW	3 cut(s)	57, 106, 118
TauI	GCSGC	1 cut(s)	311
Tru1I	TTAA	3 cut(s)	6, 51, 294
Tru9I	TTAA	3 cut(s)	6, 51, 294
TseFI	GTSAC	1 cut(s)	237
Tsp45I	GTSAC	1 cut(s)	237
TspDTI	ATGAA	2 cut(s)	98, 303
TspGWI	ACGGA	1 cut(s)	413
Van91I	CCANNNNNTGG	1 cut(s)	355
XmiI	GTMKAC	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.