Rh3CG187100
MYB Family

Alcohol dehydrogenase transcription factor Myb/SANT-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0032512
Physical Location & Seq
Forward (+)
16445877 .. 16453215
7339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG187100.1

Sequence Viewer

Length: 1137 bp
ATGGCCTCCTGTGACGACGACTTCTCTCTCCTCGGCAGTAACGACTCAAACCCTAACCACCGCAACCCTCATGCGCCTCCCAACTCCCACCGCATTCCCCAGCCCTACGCGCCTCGCTTCGCCACCCGAACTACCCCGCCCGTGGTCACCGTCTCAAGCGGCGACAAGGCCAACGCCGGAGAAGATCAGGACGACGGCGAGGACTACGGAGACGCCGCCGCGTTCTGTTCCAACCCCTTCGACAGCGGCACGGATCAGAACGACGTCGCGTCGAAGAGGAAGGACCAGTCCGATGAGCTCAGCGACGGAGCCGGCGGCGGTGGCGGAGGAGGTTCGTACACCATCATCAGGAGATCGAAATCCTCGGCCGTGGCCGCCGGAGAGTACCGGAAGGATCGCGAGGAGTGGAGCGACGGCGCGATCGCTTGCCTTCTCGATGCGTACATGGACAAGTTCACGCAGCTGAATCGGGGAAATCTGAGAGGCCGGGATTGGGAGGAGGTGGCCGTGATCGTGAGCCAGAGGTCCGAGAGGCAAACCAAGAGCGTCGAACAGTGTAAGAACAAGGTCGATAATTTGAAGAAGAGGTACAAGCTCGAGAGGCACAGGATGACCAATTCTGGAAATTCGCCGAGTCATTGGCCTTGGTTCAAGAGAATGGAGCAGATCGTCGGCAATTCGCTTCCGGCGAAGGCCACCTCTGATGATGACAGAGGCGTTACTTCCTCGGGTCCCACGCCTCAGAAATCAAAGAGAAATGCAAGTGCAATTACTAGTCCTGTGACTCAGATAAACAAGCAGCCGAAATTCAGTCTTAAATGGCGAAGAGTGGTGTTCAAAGTCAGTGGTGCTGCTCTAGCTGGCACTGCTGCTAACAACATTGACCCAAAGGTTGTTTGCACTACCATTAATTCTTTGAGCGAAATATTGATAATGGTCTGTTTTGTTGAGTTACTTCCGTTGAACGAGTTTCGATATGTGTTTTGTGATTGCGCAGATAACAATGCTGATTGCGAGAGAAGTTGCAATGGCCTGCCGCAGTGGGGTGGAGGTACTGCTGATGTCTGTGATTGTCATCTGCGAGCTTATGTGCTCAACCTTGTTTTTTACTTCTTAAAATGTTGCTTGGTGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AA_kinase Myb_DNA-bind_4

Protein Analysis

378

Amino Acids

41.49

Weight (kDa)

7.46

Isoelectric Point (pI)

46.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 133 - 223 5e-17 Myb/SANT-like DNA-binding domain
MADF_DNA_bdg PF10545 157 - 221 3.4e-06 Alcohol dehydrogenase transcription factor Myb/SANT-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0032512)

Species Orthologous Gene IDs
rosa_samantha Rh3AG170700 Rh3CG187100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 267
Acc16I TGCGCA 1 cut(s) 994
AccII CGCG 5 cut(s) 110, 221, 269, 399, 419
AclWI GGATC 2 cut(s) 261, 402
AcoI YGGCCR 3 cut(s) 366, 372, 504
AcsI RAATTY 2 cut(s) 625, 806
AcyI GRCGYC 2 cut(s) 213, 264
AfaI GTAC 5 cut(s) 338, 386, 443, 590, 1054
AfiI CCNNNNNNNGG 4 cut(s) 142, 348, 493, 1043
AgsI TTSAA 4 cut(s) 580, 652, 838, 964
AhdI GACNNNNNGTC 1 cut(s) 268
AhlI ACTAGT 1 cut(s) 773
AluBI AGCT 5 cut(s) 298, 463, 595, 860, 1085
AluI AGCT 5 cut(s) 298, 463, 595, 860, 1085
Alw21I GWGCWC 2 cut(s) 300, 1095
Alw26I GTCTC 2 cut(s) 157, 204
AlwI GGATC 2 cut(s) 261, 402
Ama87I CYCGRG 2 cut(s) 596, 727
AoxI GGCC 9 cut(s) 3, 168, 366, 372, 484, 504, 641, 693, 1030
ApeKI GCWGC 4 cut(s) 460, 799, 851, 869
ApoI RAATTY 2 cut(s) 625, 806
AseI ATTAAT 1 cut(s) 909
AsiSI GCGATCGC 1 cut(s) 423
AspLEI GCGC 4 cut(s) 76, 112, 419, 995
AspS9I GGNCC 3 cut(s) 283, 525, 731
AsuC2I CCSGG 1 cut(s) 488
AsuHPI GGTGA 1 cut(s) 139
AvaI CYCGRG 2 cut(s) 596, 727
AvaII GGWCC 3 cut(s) 283, 525, 731
BanII GRGCYC 1 cut(s) 300
BarI GAAGNNNNNNTAC 2 cut(s) 572, 604
Bbv12I GWGCWC 2 cut(s) 300, 1095
BbvI GCAGC 4 cut(s) 472, 811, 838, 856
BccI CCATC 1 cut(s) 350
BceAI ACGGC 4 cut(s) 211, 353, 430, 491
BcgI CGANNNNNNTGC 2 cut(s) 449, 483
BcnI CCSGG 1 cut(s) 488
BcoDI GTCTC 2 cut(s) 157, 204
BcuI ACTAGT 1 cut(s) 773
BfaI CTAG 2 cut(s) 774, 857
BlpI GCTNAGC 1 cut(s) 299
Bme1390I CCNGG 1 cut(s) 488
Bme18I GGWCC 3 cut(s) 283, 525, 731
BmeRI GACNNNNNGTC 1 cut(s) 268
BmeT110I CYCGRG 2 cut(s) 596, 727
BmgT120I GGNCC 3 cut(s) 283, 525, 731
BmiI GGNNCC 3 cut(s) 310, 732, 733
BmrFI CCNGG 1 cut(s) 488
BmsI GCATC 1 cut(s) 427
Bpu1102I GCTNAGC 1 cut(s) 299
BpuEI CTTGAG 1 cut(s) 139
BpuMI CCSGG 1 cut(s) 488
BsaBI GATNNNNATC 2 cut(s) 358, 1074
BsaHI GRCGYC 2 cut(s) 213, 264
BsaJI CCNNGG 6 cut(s) 31, 141, 363, 369, 644, 726
BsaWI WCCGGW 1 cut(s) 387
Bsc4I CCNNNNNNNGG 4 cut(s) 142, 348, 493, 1043
Bse118I RCCGGY 1 cut(s) 311
Bse1I ACTGG 1 cut(s) 286
Bse3DI GCAATG 1 cut(s) 1033
Bse8I GATNNNNATC 2 cut(s) 358, 1074
BseDI CCNNGG 6 cut(s) 31, 141, 363, 369, 644, 726
BseGI GGATG 1 cut(s) 615
BseJI GATNNNNATC 2 cut(s) 358, 1074
BseLI CCNNNNNNNGG 4 cut(s) 142, 348, 493, 1043
BseMI GCAATG 1 cut(s) 1033
BseMII CTCAG 4 cut(s) 313, 470, 755, 800
BseNI ACTGG 1 cut(s) 286
BseRI GAGGAG 4 cut(s) 20, 342, 416, 512
BseX3I CGGCCG 1 cut(s) 366
BseXI GCAGC 4 cut(s) 472, 811, 838, 856
BseYI CCCAGC 1 cut(s) 99
Bsh1236I CGCG 5 cut(s) 110, 221, 269, 399, 419
Bsh1285I CGRYCG 2 cut(s) 369, 423
BshFI GGCC 9 cut(s) 5, 170, 368, 374, 486, 506, 643, 695, 1032
BsiEI CGRYCG 2 cut(s) 369, 423
BsiHKAI GWGCWC 2 cut(s) 300, 1095
BsiHKCI CYCGRG 2 cut(s) 596, 727
BsiSI CCGG 6 cut(s) 177, 312, 378, 388, 487, 686
BslFI GGGAC 1 cut(s) 717
BslI CCNNNNNNNGG 4 cut(s) 142, 348, 493, 1043
BsmAI GTCTC 2 cut(s) 157, 204
BsmBI CGTCTC 2 cut(s) 157, 204
BsmFI GGGAC 1 cut(s) 717
BsmI GAATGC 1 cut(s) 93
BsnI GGCC 9 cut(s) 5, 170, 368, 374, 486, 506, 643, 695, 1032
BsoBI CYCGRG 2 cut(s) 596, 727
Bsp1286I GDGCHC 2 cut(s) 300, 1095
Bsp143I GATC 7 cut(s) 184, 253, 353, 394, 420, 510, 666
Bsp1720I GCTNAGC 1 cut(s) 299
Bsp68I TCGCGA 1 cut(s) 399
BspANI GGCC 9 cut(s) 5, 170, 368, 374, 486, 506, 643, 695, 1032
BspCNI CTCAG 4 cut(s) 312, 471, 754, 799
BspFNI CGCG 5 cut(s) 110, 221, 269, 399, 419
BspLI GGNNCC 3 cut(s) 310, 732, 733
BspPI GGATC 2 cut(s) 261, 402
BsrDI GCAATG 1 cut(s) 1033
BsrFI RCCGGY 1 cut(s) 311
BsrI ACTGG 1 cut(s) 286
BssAI RCCGGY 1 cut(s) 311
BssECI CCNNGG 6 cut(s) 31, 141, 363, 369, 644, 726
BssMI GATC 7 cut(s) 184, 253, 353, 394, 420, 510, 666
BssNI GRCGYC 2 cut(s) 213, 264
BssT1I CCWWGG 1 cut(s) 644
Bst4CI ACNGT 2 cut(s) 151, 555
Bst6I CTCTTC 3 cut(s) 269, 578, 820
BstACI GRCGYC 2 cut(s) 213, 264
BstC8I GCNNGC 5 cut(s) 313, 427, 862, 1034, 1083
BstDEI CTNAG 4 cut(s) 299, 479, 741, 786
BstDSI CCRYGG 2 cut(s) 141, 369
BstEII GGTNACC 1 cut(s) 145
BstF5I GGATG 1 cut(s) 615
BstFNI CGCG 5 cut(s) 110, 221, 269, 399, 419
BstHHI GCGC 4 cut(s) 76, 112, 419, 995
BstKTI GATC 7 cut(s) 187, 256, 356, 397, 423, 513, 669
BstMAI GTCTC 2 cut(s) 157, 204
BstMBI GATC 7 cut(s) 184, 253, 353, 394, 420, 510, 666
BstMCI CGRYCG 2 cut(s) 369, 423
BstMWI GCNNNNNNNGC 6 cut(s) 109, 321, 374, 601, 857, 866
BstPI GGTNACC 1 cut(s) 145
BstSCI CCNGG 1 cut(s) 486
BstUI CGCG 5 cut(s) 110, 221, 269, 399, 419
BstV1I GCAGC 4 cut(s) 472, 811, 838, 856
BstZI CGGCCG 1 cut(s) 366
BsuRI GGCC 9 cut(s) 5, 170, 368, 374, 486, 506, 643, 695, 1032
BtgI CCRYGG 2 cut(s) 141, 369
BtsCI GGATG 1 cut(s) 615
BtsI GCAGTG 2 cut(s) 864, 1046
BtsIMutI CAGTG 4 cut(s) 560, 850, 864, 1046
BtuMI TCGCGA 1 cut(s) 399
Cac8I GCNNGC 5 cut(s) 313, 427, 862, 1034, 1083
CfoI GCGC 4 cut(s) 76, 112, 419, 995
Cfr10I RCCGGY 1 cut(s) 311
Cfr13I GGNCC 3 cut(s) 283, 525, 731
CseI GACGC 3 cut(s) 221, 258, 535
Csp6I GTAC 5 cut(s) 337, 385, 442, 589, 1053
CspCI CAANNNNNGTGG 2 cut(s) 826, 861
CviAII CATG 2 cut(s) 71, 445
CviQI GTAC 5 cut(s) 337, 385, 442, 589, 1053
DdeI CTNAG 4 cut(s) 299, 479, 741, 786
DpnI GATC 7 cut(s) 186, 255, 355, 396, 422, 512, 668
DpnII GATC 7 cut(s) 184, 253, 353, 394, 420, 510, 666
DriI GACNNNNNGTC 1 cut(s) 268
EaeI YGGCCR 3 cut(s) 366, 372, 504
EagI CGGCCG 1 cut(s) 366
Eam1104I CTCTTC 3 cut(s) 269, 578, 820
Eam1105I GACNNNNNGTC 1 cut(s) 268
EarI CTCTTC 3 cut(s) 269, 578, 820
EciI GGCGGA 1 cut(s) 339
Ecl136II GAGCTC 1 cut(s) 298
EclXI CGGCCG 1 cut(s) 366
Eco130I CCWWGG 1 cut(s) 644
Eco24I GRGCYC 1 cut(s) 300
Eco47I GGWCC 3 cut(s) 283, 525, 731
Eco52I CGGCCG 1 cut(s) 366
Eco53kI GAGCTC 1 cut(s) 298
Eco88I CYCGRG 2 cut(s) 596, 727
Eco91I GGTNACC 1 cut(s) 145
EcoICRI GAGCTC 1 cut(s) 298
EcoO109I RGGNCCY 1 cut(s) 731
EcoO65I GGTNACC 1 cut(s) 145
EcoT14I CCWWGG 1 cut(s) 644
EcoT38I GRGCYC 1 cut(s) 300
ErhI CCWWGG 1 cut(s) 644
Esp3I CGTCTC 2 cut(s) 157, 204
FaeI CATG 2 cut(s) 74, 448
FaiI YATR 4 cut(s) 72, 446, 978, 1089
FaqI GGGAC 1 cut(s) 717
FatI CATG 2 cut(s) 70, 444
FauI CCCGC 1 cut(s) 144
FokI GGATG 1 cut(s) 622
FriOI GRGCYC 1 cut(s) 300
FspBI CTAG 2 cut(s) 774, 857
FspI TGCGCA 1 cut(s) 994
GlaI GCGC 4 cut(s) 75, 111, 418, 994
GsaI CCCAGC 1 cut(s) 103
HaeIII GGCC 9 cut(s) 5, 170, 368, 374, 486, 506, 643, 695, 1032
HapII CCGG 6 cut(s) 177, 312, 378, 388, 487, 686
HgaI GACGC 3 cut(s) 221, 258, 535
HhaI GCGC 4 cut(s) 76, 112, 419, 995
Hin1I GRCGYC 2 cut(s) 213, 264
Hin1II CATG 2 cut(s) 74, 448
Hin6I GCGC 4 cut(s) 74, 110, 417, 993
HinP1I GCGC 4 cut(s) 74, 110, 417, 993
HinfI GANTC 4 cut(s) 44, 466, 634, 784
HpaII CCGG 6 cut(s) 177, 312, 378, 388, 487, 686
HphI GGTGA 1 cut(s) 139
Hpy166II GTNNAC 2 cut(s) 339, 456
Hpy188I TCNGA 7 cut(s) 258, 292, 480, 529, 703, 744, 789
Hpy188III TCNNGA 8 cut(s) 188, 349, 398, 434, 514, 598, 621, 652
Hpy8I GTNNAC 2 cut(s) 339, 456
Hpy99I CGWCG 9 cut(s) 20, 197, 266, 269, 274, 308, 416, 551, 674
HpyAV CCTTC 5 cut(s) 247, 274, 385, 440, 685
HpyCH4III ACNGT 2 cut(s) 151, 555
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 4 cut(s) 761, 767, 900, 1026
HpyF10VI GCNNNNNNNGC 6 cut(s) 109, 321, 374, 601, 857, 866
HpyF3I CTNAG 4 cut(s) 299, 479, 741, 786
HpySE526I ACGT 1 cut(s) 264
Hsp92I GRCGYC 2 cut(s) 213, 264
Hsp92II CATG 2 cut(s) 74, 448
HspAI GCGC 4 cut(s) 74, 110, 417, 993
KflI GGGWCCC 1 cut(s) 731
KroI GCCGGC 1 cut(s) 311
KroNI GCCGGC 1 cut(s) 313
Kzo9I GATC 7 cut(s) 184, 253, 353, 394, 420, 510, 666
LmnI GCTCC 3 cut(s) 308, 408, 661
Lsp1109I GCAGC 4 cut(s) 472, 811, 838, 856
LweI GCATC 1 cut(s) 427
MaeI CTAG 2 cut(s) 774, 857
MaeII ACGT 1 cut(s) 264
MaeIII GTNAC 6 cut(s) 11, 38, 145, 718, 781, 951
MalI GATC 7 cut(s) 186, 255, 355, 396, 422, 512, 668
MboI GATC 7 cut(s) 184, 253, 353, 394, 420, 510, 666
MboII GAAGA 5 cut(s) 194, 286, 592, 595, 837
MhlI GDGCHC 2 cut(s) 300, 1095
MluCI AATT 7 cut(s) 574, 616, 625, 676, 768, 806, 910
MlyI GAGTC 3 cut(s) 38, 643, 778
MmeI TCCRAC 1 cut(s) 255
MroNI GCCGGC 1 cut(s) 311
MseI TTAA 3 cut(s) 816, 909, 1115
MspA1I CMGCKG 2 cut(s) 246, 463
MspI CCGG 6 cut(s) 177, 312, 378, 388, 487, 686
MspR9I CCNGG 1 cut(s) 488
Mva1269I GAATGC 1 cut(s) 93
MvnI CGCG 5 cut(s) 110, 221, 269, 399, 419
MwoI GCNNNNNNNGC 6 cut(s) 109, 321, 374, 601, 857, 866
NaeI GCCGGC 1 cut(s) 313
NciI CCSGG 1 cut(s) 488
NdeII GATC 7 cut(s) 184, 253, 353, 394, 420, 510, 666
NgoMIV GCCGGC 1 cut(s) 311
NlaIII CATG 2 cut(s) 74, 448
NlaIV GGNNCC 3 cut(s) 310, 732, 733
NmeAIII GCCGAG 3 cut(s) 12, 344, 657
NmuCI GTSAC 3 cut(s) 11, 145, 781
NruI TCGCGA 1 cut(s) 399
NsbI TGCGCA 1 cut(s) 994
PaeR7I CTCGAG 1 cut(s) 596
PcsI WCGNNNNNNNCGW 2 cut(s) 39, 686
PctI GAATGC 1 cut(s) 93
PdiI GCCGGC 1 cut(s) 313
PfeI GAWTC 1 cut(s) 466
Ple19I CGATCG 1 cut(s) 423
PleI GAGTC 3 cut(s) 38, 642, 778
PpsI GAGTC 3 cut(s) 38, 642, 778
PpuMI RGGWCCY 1 cut(s) 731
PshBI ATTAAT 1 cut(s) 909
Psp124BI GAGCTC 1 cut(s) 300
Psp5II RGGWCCY 1 cut(s) 731
PspEI GGTNACC 1 cut(s) 145
PspFI CCCAGC 1 cut(s) 99
PspN4I GGNNCC 3 cut(s) 310, 732, 733
PspPI GGNCC 3 cut(s) 283, 525, 731
PspPPI RGGWCCY 1 cut(s) 731
PvuI CGATCG 1 cut(s) 423
PvuII CAGCTG 1 cut(s) 463
RgaI GCGATCGC 1 cut(s) 423
RruI TCGCGA 1 cut(s) 399
RsaI GTAC 5 cut(s) 338, 386, 443, 590, 1054
RsaNI GTAC 5 cut(s) 337, 385, 442, 589, 1053
SacI GAGCTC 1 cut(s) 300
SaqAI TTAA 3 cut(s) 816, 909, 1115
Sau3AI GATC 7 cut(s) 184, 253, 353, 394, 420, 510, 666
Sau96I GGNCC 3 cut(s) 283, 525, 731
SchI GAGTC 3 cut(s) 38, 643, 778
ScrFI CCNGG 1 cut(s) 488
SduI GDGCHC 2 cut(s) 300, 1095
SfaAI GCGATCGC 1 cut(s) 423
SfaNI GCATC 1 cut(s) 427
Sfr274I CTCGAG 1 cut(s) 596
SgfI GCGATCGC 1 cut(s) 423
SinI GGWCC 3 cut(s) 283, 525, 731
SlaI CTCGAG 1 cut(s) 596
SmlI CTYRAG 2 cut(s) 154, 596
SmoI CTYRAG 2 cut(s) 154, 596
SpeI ACTAGT 1 cut(s) 773
Sse9I AATT 7 cut(s) 574, 616, 625, 676, 768, 806, 910
SspI AATATT 1 cut(s) 927
SspMI CTAG 2 cut(s) 774, 857
SstI GAGCTC 1 cut(s) 300
StyD4I CCNGG 1 cut(s) 486
StyI CCWWGG 1 cut(s) 644
TaaI ACNGT 2 cut(s) 151, 555
TaiI ACGT 1 cut(s) 267
TaqI TCGA 8 cut(s) 240, 272, 356, 435, 549, 570, 597, 973
TasI AATT 7 cut(s) 574, 616, 625, 676, 768, 806, 910
TauI GCSGC 7 cut(s) 162, 218, 221, 249, 318, 377, 1039
TfiI GAWTC 1 cut(s) 466
Tru1I TTAA 3 cut(s) 816, 909, 1115
Tru9I TTAA 3 cut(s) 816, 909, 1115
TscAI CASTG 4 cut(s) 560, 850, 871, 1046
TseFI GTSAC 3 cut(s) 11, 145, 781
TseI GCWGC 4 cut(s) 460, 799, 851, 869
Tsp45I GTSAC 3 cut(s) 11, 145, 781
TspGWI ACGGA 4 cut(s) 222, 266, 321, 948
TspRI CASTG 4 cut(s) 560, 850, 871, 1046
VpaK11BI GGWCC 3 cut(s) 283, 525, 731
VspI ATTAAT 1 cut(s) 909
XapI RAATTY 2 cut(s) 625, 806
XhoI CTCGAG 1 cut(s) 596
XspI CTAG 2 cut(s) 774, 857
ZraI GACGTC 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.