Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0033079

Physical Location & Seq

Genomic Coordinates Reverse (-)

68911864 .. 68913087

Gene Structure 1224 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG475900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGATAACTTCATGCATGCACTGCATGTCAGAAGATGCCCAGATTAATATATGGCTGAGGATGGGGTGTGCAGGTCTTAAGAGATCCGGAAACAGTGTTAGACTTAGATGGTTGAATTATCTGAGGCCTGATATCAACACAAGTAGTATTACAGAATACGAAGAAGATCTTCTCATCAGGCTCCATAAACTCTTGGGCAACAGATGGTCATTGATAGCCAGAAGGATACCAGGCAGAACTGAAAATCAAGTTAAAAACTACTGGAATTCTACCTTGAAGAAGAAGCTGTCACAAAAAAATTTATGCGAAGAGCTTTGTAATTGGACTTTGGAGGACTCGTCATCCCCCGTTCCTACCATCGACCAGGACGACCCACATTGGACAAAAAAAAATGTTTATGAAGAAGGTCAAGCATGTCAAGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

141

Amino Acids

16.43

Weight (kDa)

8.22

Isoelectric Point (pI)

74.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	51 - 91	1.7e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	51 - 100	1.1e-10	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0033079)

Species	Orthologous Gene IDs
rosa_samantha	Rh2BG467000 Rh2DG475900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	62
AccIII	TCCGGA	1 cut(s)	86
AclWI	GGATC	1 cut(s)	78
AcsI	RAATTY	2 cut(s)	265, 298
AflII	CTTAAG	1 cut(s)	77
AgsI	TTSAA	2 cut(s)	115, 277
AjnI	CCWGG	2 cut(s)	229, 363
AluBI	AGCT	2 cut(s)	286, 313
AluI	AGCT	2 cut(s)	286, 313
AlwI	GGATC	1 cut(s)	78
Aor13HI	TCCGGA	1 cut(s)	86
AoxI	GGCC	1 cut(s)	125
ApoI	RAATTY	2 cut(s)	265, 298
AseI	ATTAAT	1 cut(s)	45
Asp700I	GAANNNNTTC	1 cut(s)	168
BbvCI	CCTCAGC	1 cut(s)	56
BccI	CCATC	4 cut(s)	55, 102, 198, 365
BciT130I	CCWGG	2 cut(s)	231, 365
BciVI	GTATCC	1 cut(s)	219
BfrI	CTTAAG	1 cut(s)	77
BfuAI	ACCTGC	1 cut(s)	62
BfuI	GTATCC	1 cut(s)	219
BglII	AGATCT	1 cut(s)	166
Bme1390I	CCNGG	2 cut(s)	231, 365
BmiI	GGNNCC	1 cut(s)	182
BmrFI	CCNGG	2 cut(s)	231, 365
BmsI	GCATC	1 cut(s)	25
Bpu10I	CCTNAGC	1 cut(s)	56
BsaWI	WCCGGW	1 cut(s)	86
BsaXI	ACNNNNNCTCC	2 cut(s)	323, 353
Bse1I	ACTGG	1 cut(s)	266
BseAI	TCCGGA	1 cut(s)	86
BseBI	CCWGG	2 cut(s)	231, 365
BseGI	GGATG	2 cut(s)	66, 341
BseMII	CTCAG	2 cut(s)	47, 113
BseNI	ACTGG	1 cut(s)	266
BsgI	GTGCAG	1 cut(s)	90
BshFI	GGCC	1 cut(s)	127
BsiSI	CCGG	1 cut(s)	87
BsnI	GGCC	1 cut(s)	127
Bsp13I	TCCGGA	1 cut(s)	86
Bsp143I	GATC	2 cut(s)	83, 166
BspANI	GGCC	1 cut(s)	127
BspCNI	CTCAG	2 cut(s)	48, 114
BspEI	TCCGGA	1 cut(s)	86
BspLI	GGNNCC	1 cut(s)	182
BspMI	ACCTGC	1 cut(s)	62
BspPI	GGATC	1 cut(s)	78
BspQI	GCTCTTC	1 cut(s)	303
BspTI	CTTAAG	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	266
BssMI	GATC	2 cut(s)	83, 166
Bst2UI	CCWGG	2 cut(s)	231, 365
Bst4CI	ACNGT	1 cut(s)	95
Bst6I	CTCTTC	1 cut(s)	303
BstAFI	CTTAAG	1 cut(s)	77
BstAPI	GCANNNNNTGC	1 cut(s)	21
BstC8I	GCNNGC	1 cut(s)	17
BstDEI	CTNAG	3 cut(s)	56, 104, 122
BstF5I	GGATG	2 cut(s)	66, 341
BstKTI	GATC	2 cut(s)	86, 169
BstMBI	GATC	2 cut(s)	83, 166
BstMWI	GCNNNNNNNGC	1 cut(s)	21
BstNI	CCWGG	2 cut(s)	231, 365
BstNSI	RCATGY	3 cut(s)	19, 28, 417
BstSCI	CCNGG	2 cut(s)	229, 363
BstX2I	RGATCY	2 cut(s)	83, 166
BstYI	RGATCY	2 cut(s)	83, 166
BsuI	GTATCC	1 cut(s)	219
BsuRI	GGCC	1 cut(s)	127
BtsCI	GGATG	2 cut(s)	66, 341
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	2 cut(s)	19, 100
BveI	ACCTGC	1 cut(s)	62
Cac8I	GCNNGC	1 cut(s)	17
CviAII	CATG	4 cut(s)	12, 16, 25, 414
CviJI	RGCY	6 cut(s)	55, 127, 181, 218, 286, 313
CviKI_1	RGCY	6 cut(s)	55, 127, 181, 218, 286, 313
DdeI	CTNAG	3 cut(s)	56, 104, 122
DpnI	GATC	2 cut(s)	85, 168
DpnII	GATC	2 cut(s)	83, 166
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
Eco147I	AGGCCT	1 cut(s)	127
Eco32I	GATATC	1 cut(s)	133
EcoRI	GAATTC	1 cut(s)	265
EcoRII	CCWGG	2 cut(s)	229, 363
EcoRV	GATATC	1 cut(s)	133
EcoT22I	ATGCAT	1 cut(s)	17
FaeI	CATG	4 cut(s)	15, 19, 28, 417
FaiI	YATR	9 cut(s)	13, 17, 26, 50, 52, 186, 304, 399, 415
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
FatI	CATG	4 cut(s)	11, 15, 24, 413
FokI	GGATG	2 cut(s)	73, 328
HaeIII	GGCC	1 cut(s)	127
HapII	CCGG	1 cut(s)	87
Hin1II	CATG	4 cut(s)	15, 19, 28, 417
HinfI	GANTC	1 cut(s)	335
HpaII	CCGG	1 cut(s)	87
Hpy188I	TCNGA	2 cut(s)	31, 123
Hpy188III	TCNNGA	1 cut(s)	87
HpyAV	CCTTC	2 cut(s)	216, 398
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4V	TGCA	4 cut(s)	15, 19, 24, 71
HpyF10VI	GCNNNNNNNGC	1 cut(s)	21
HpyF3I	CTNAG	3 cut(s)	56, 104, 122
Hsp92II	CATG	4 cut(s)	15, 19, 28, 417
Kpn2I	TCCGGA	1 cut(s)	86
Kzo9I	GATC	2 cut(s)	83, 166
LguI	GCTCTTC	1 cut(s)	303
LmnI	GCTCC	1 cut(s)	186
LweI	GCATC	1 cut(s)	25
MaeIII	GTNAC	1 cut(s)	288
MalI	GATC	2 cut(s)	85, 168
MboI	GATC	2 cut(s)	83, 166
MboII	GAAGA	8 cut(s)	44, 161, 173, 176, 289, 292, 320, 413
MflI	RGATCY	2 cut(s)	83, 166
MluCI	AATT	4 cut(s)	115, 265, 298, 319
MlyI	GAGTC	1 cut(s)	329
MnlI	CCTC	3 cut(s)	51, 117, 325
Mph1103I	ATGCAT	1 cut(s)	17
MroI	TCCGGA	1 cut(s)	86
MroXI	GAANNNNTTC	1 cut(s)	168
MseI	TTAA	3 cut(s)	45, 78, 252
MspCI	CTTAAG	1 cut(s)	77
MspI	CCGG	1 cut(s)	87
MspR9I	CCNGG	2 cut(s)	231, 365
MvaI	CCWGG	2 cut(s)	231, 365
MwoI	GCNNNNNNNGC	1 cut(s)	21
NdeII	GATC	2 cut(s)	83, 166
NlaIII	CATG	4 cut(s)	15, 19, 28, 417
NlaIV	GGNNCC	1 cut(s)	182
NmuCI	GTSAC	1 cut(s)	288
NsiI	ATGCAT	1 cut(s)	17
NspI	RCATGY	3 cut(s)	19, 28, 417
PaeI	GCATGC	1 cut(s)	19
PceI	AGGCCT	1 cut(s)	127
PciSI	GCTCTTC	1 cut(s)	303
PcsI	WCGNNNNNNNCGW	1 cut(s)	366
PdmI	GAANNNNTTC	1 cut(s)	168
PleI	GAGTC	1 cut(s)	329
PpsI	GAGTC	1 cut(s)	329
PshBI	ATTAAT	1 cut(s)	45
Psp6I	CCWGG	2 cut(s)	229, 363
PspGI	CCWGG	2 cut(s)	229, 363
PspN4I	GGNNCC	1 cut(s)	182
PsuI	RGATCY	2 cut(s)	83, 166
SapI	GCTCTTC	1 cut(s)	303
SaqAI	TTAA	3 cut(s)	45, 78, 252
Sau3AI	GATC	2 cut(s)	83, 166
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	2 cut(s)	231, 365
SetI	ASST	5 cut(s)	76, 275, 288, 315, 409
SfaNI	GCATC	1 cut(s)	25
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
SphI	GCATGC	1 cut(s)	19
Sse9I	AATT	4 cut(s)	115, 265, 298, 319
SseBI	AGGCCT	1 cut(s)	127
StuI	AGGCCT	1 cut(s)	127
StyD4I	CCNGG	2 cut(s)	229, 363
TaaI	ACNGT	1 cut(s)	95
TaqI	TCGA	1 cut(s)	360
TasI	AATT	4 cut(s)	115, 265, 298, 319
Tru1I	TTAA	3 cut(s)	45, 78, 252
Tru9I	TTAA	3 cut(s)	45, 78, 252
TscAI	CASTG	2 cut(s)	26, 100
TseFI	GTSAC	1 cut(s)	288
Tsp45I	GTSAC	1 cut(s)	288
TspDTI	ATGAA	1 cut(s)	414
TspRI	CASTG	2 cut(s)	26, 100
Vha464I	CTTAAG	1 cut(s)	77
VspI	ATTAAT	1 cut(s)	45
XapI	RAATTY	2 cut(s)	265, 298
XceI	RCATGY	3 cut(s)	19, 28, 417
XmnI	GAANNNNTTC	1 cut(s)	168
Zsp2I	ATGCAT	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.