Rorug03G0249900

Autophagy-related protein 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0019418
Physical Location & Seq
Reverse (-)
23568033 .. 23571083
3051 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0249900.1

Sequence Viewer

Length: 1317 bp
ATGATAAGGGTAAGAGGGAGGAGAGGGTTCCCCAATTTTGATATCAGTCTATATGATGTCCAAGTCATTCTGGATAGCACAACCTTTCCAATAAAAGGTGCTTCGAAGACCATAAAGCGGAGTTCAATTTATGATGTGCTTCAAAAGATAAGAAAGACTCGCAACTTCCCCAGCTCAACACCCAGTGCCCCTCCATCACTTCACCCAATAGATCAAACTCAAACAACGGCAATCGATTCAAGCCTTCAGTATCAATTTCATAGTCTACGAGTAAAAGAGGATGCAACTAGACCTCATGGCCTAGCTGCTCTAAAATTATGGGGCGAGTCTGCGAGTTTGAATTTTCCGTTGAGCAACTACCTGAATGACCTGGAAGAAATGAAGTCATTTACGAAGAAGGAATACTTTCTACACATCAGAAAGAAGACGGGTTTAACCAAGACGGTATCCAATTACCGTGGAGTTTCAAGGAACGCGCACAATAAAAAATGGCAAGTTAGGTTAGGAAAAGGAAAAGACATTGATAGCATTTACGTGGGAACATTTGATACGGAAGAGCAAGCCGCCGAAGCATATGACGTTGCAGCTATAAGGGTGAAAGGGCCGAAAGCAATCACCAATTTTGATAAAAGTAACTATGATATCAAACAGATTCTTGAAGGCCCAAAATTTCTAATTGAAAAAGGTGCATCGAAGACATTGAAGCGGAGTTCAGTTGACGATGTGCTTCAAAAGAGAAGAAAGACTCGCAGTGTCTCCAGCTCAACCCCTAGTGCCCCACCATCACTTCACCCAATAGATCAAACTAAACTAACGGCAATCGATTCAACCCTTCAGTATCAATTTCAGATCCCTTCCCTCCAAGTTCCTGTCCCTCACGGTTACCAAAACCCTACCTTTGAAGCAAACCGAAGTTTCAGTCCTCACTATGACTATGGTGGAAGTGAGCCAACAACCCAGTTTCAACCTATCATACCCGTATTGAATCAAGAGTTTCCATCTCACCAGTACTATAACGGTAATTCCCAGCACCACCTTGATCAAACCCCTAGCTCGCAGTTCCTTCAAGACACTCAGAACCCTAATCTTGTTGCTGGGTTGAACAACCTTGCAAGTGATAACTGTATGGAAGACTTTTCCAGCAGTCAGGTTCATGAGGCGAGTTTCGAGATGATGGGGACGAACGAGGGTGGTGTTCATGGTGATGGAAATCTTGGTGATCCTGTGTTTGGGCTGGGCAATTCTGACTTGGATTCTGCGAGTTGGCTGGAAACGTTCTTGAGGATGAGCCCACAACGTCCTGATTCTAAGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000045 GO:0000272 GO:0000407 GO:0000422 GO:0001932 GO:0001934 GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005776 GO:0005911 GO:0005975 GO:0005976 GO:0005977 GO:0005980 GO:0006073 GO:0006091 GO:0006112 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009506 GO:0009893 GO:0009987 GO:0010150 GO:0010562 GO:0010604 GO:0015980 GO:0016020 GO:0016043 GO:0016052 GO:0016236 GO:0019220 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0022411 GO:0022607 GO:0030054 GO:0030242 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032947 GO:0032991 GO:0034045 GO:0042325 GO:0042327 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0045937 GO:0046983 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0055044 GO:0055114 GO:0060255 GO:0061695 GO:0061709 GO:0061723 GO:0061726 GO:0061912 GO:0061919 GO:0065007 GO:0070925 GO:0071704 GO:0071840 GO:0080090 GO:0090693 GO:0098805 GO:0099402 GO:1901575 GO:1902494 GO:1902554 GO:1902911 GO:1903008 GO:1905037 GO:1990234 GO:1990316
KEGG Pathways
Metabolic & Signaling
ko04136 ko04138 ko04139 map04136 map04138 map04139
Pfam Domains
Protein Families
APG17 ATG11

Protein Analysis

438

Amino Acids

49.02

Weight (kDa)

8.8

Isoelectric Point (pI)

51.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 150 - 201 3.1e-09 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019418)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0033091
rosa_rugosa Rorug03G0249900 Rorug04G0055700 Rorug04G0055800 RorugPtG0003600
rosa_samantha Rh2AG071500 Rh2CG536000 Rh5AG228500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 265
AccII CGCG 1 cut(s) 476
AciI CCGC 3 cut(s) 118, 564, 706
AclI AACGTT 1 cut(s) 1274
AclWI GGATC 2 cut(s) 844, 1214
AcsI RAATTY 2 cut(s) 340, 668
AcuI CTGAAG 2 cut(s) 230, 818
AdeI CACNNNGTG 1 cut(s) 185
AfaI GTAC 1 cut(s) 1010
AfiI CCNNNNNNNGG 3 cut(s) 95, 117, 1229
AjnI CCWGG 1 cut(s) 369
AluBI AGCT 5 cut(s) 174, 305, 587, 762, 1053
AluI AGCT 5 cut(s) 174, 305, 587, 762, 1053
Alw26I GTCTC 1 cut(s) 760
AlwI GGATC 2 cut(s) 844, 1214
AoxI GGCC 3 cut(s) 298, 602, 661
ApeKI GCWGC 2 cut(s) 305, 584
ApoI RAATTY 2 cut(s) 340, 668
ArsI GACNNNNNNTTYG 2 cut(s) 904, 936
Asp700I GAANNNNTTC 1 cut(s) 405
AspLEI GCGC 1 cut(s) 478
AspS9I GGNCC 2 cut(s) 602, 662
AsuHPI GGTGA 7 cut(s) 194, 607, 607, 782, 995, 1214, 1229
AsuII TTCGAA 1 cut(s) 104
BaeGI GKGCMC 2 cut(s) 190, 778
BanII GRGCYC 1 cut(s) 1292
BarI GAAGNNNNNNTAC 2 cut(s) 386, 418
BbsI GAAGAC 4 cut(s) 113, 431, 701, 1137
BbvI GCAGC 2 cut(s) 292, 596
BccI CCATC 5 cut(s) 202, 790, 1006, 1168, 1199
BceAI ACGGC 2 cut(s) 243, 831
BciT130I CCWGG 1 cut(s) 371
BciVI GTATCC 1 cut(s) 457
BclI TGATCA 1 cut(s) 1039
BcoDI GTCTC 1 cut(s) 760
BfaI CTAG 4 cut(s) 288, 302, 771, 1050
BfuI GTATCC 1 cut(s) 457
BisI GCNGC 3 cut(s) 306, 564, 585
BlsI GCNGC 3 cut(s) 307, 565, 586
BmcAI AGTACT 1 cut(s) 1010
Bme1390I CCNGG 1 cut(s) 371
BmgT120I GGNCC 2 cut(s) 602, 662
BmiI GGNNCC 1 cut(s) 29
BmrFI CCNGG 1 cut(s) 371
BmrI ACTGGG 2 cut(s) 177, 952
BmsI GCATC 2 cut(s) 271, 698
BmuI ACTGGG 2 cut(s) 177, 952
BpiI GAAGAC 4 cut(s) 113, 431, 701, 1137
BpmI CTGGAG 1 cut(s) 742
Bpu14I TTCGAA 1 cut(s) 104
BpuEI CTTGAG 1 cut(s) 1300
Bsa29I ATCGAT 2 cut(s) 234, 822
BsaAI YACGTR 1 cut(s) 535
BsaBI GATNNNNATC 1 cut(s) 1209
BsaJI CCNNGG 1 cut(s) 457
Bsc4I CCNNNNNNNGG 3 cut(s) 95, 117, 1229
Bse1I ACTGG 3 cut(s) 183, 958, 1006
Bse8I GATNNNNATC 1 cut(s) 1209
BseBI CCWGG 1 cut(s) 371
BseCI ATCGAT 2 cut(s) 234, 822
BseDI CCNNGG 1 cut(s) 457
BseGI GGATG 2 cut(s) 286, 1290
BseJI GATNNNNATC 1 cut(s) 1209
BseLI CCNNNNNNNGG 3 cut(s) 95, 117, 1229
BseMII CTCAG 1 cut(s) 1088
BseNI ACTGG 3 cut(s) 183, 958, 1006
BseRI GAGGAG 1 cut(s) 34
BseSI GKGCMC 2 cut(s) 190, 778
BseXI GCAGC 2 cut(s) 292, 596
BseYI CCCAGC 4 cut(s) 170, 1026, 1094, 1234
Bsh1236I CGCG 1 cut(s) 476
BshFI GGCC 3 cut(s) 300, 604, 663
BshVI ATCGAT 2 cut(s) 234, 822
BslFI GGGAC 2 cut(s) 857, 1192
BslI CCNNNNNNNGG 3 cut(s) 95, 117, 1229
BsmAI GTCTC 1 cut(s) 760
BsmFI GGGAC 2 cut(s) 857, 1192
BsnI GGCC 3 cut(s) 300, 604, 663
Bsp119I TTCGAA 1 cut(s) 104
Bsp1286I GDGCHC 3 cut(s) 190, 778, 1292
Bsp143I GATC 5 cut(s) 211, 799, 849, 1039, 1219
BspACI CCGC 3 cut(s) 118, 564, 706
BspANI GGCC 3 cut(s) 300, 604, 663
BspCNI CTCAG 1 cut(s) 1087
BspDI ATCGAT 2 cut(s) 234, 822
BspFNI CGCG 1 cut(s) 476
BspHI TCATGA 1 cut(s) 1153
BspLI GGNNCC 1 cut(s) 29
BspPI GGATC 2 cut(s) 844, 1214
BspQI GCTCTTC 1 cut(s) 549
BspT104I TTCGAA 1 cut(s) 104
BsrI ACTGG 3 cut(s) 183, 958, 1006
BssECI CCNNGG 1 cut(s) 457
BssMI GATC 5 cut(s) 211, 799, 849, 1039, 1219
Bst2UI CCWGG 1 cut(s) 371
Bst4CI ACNGT 5 cut(s) 445, 458, 881, 1019, 1124
Bst6I CTCTTC 1 cut(s) 549
BstBAI YACGTR 1 cut(s) 535
BstBI TTCGAA 1 cut(s) 104
BstC8I GCNNGC 2 cut(s) 561, 1055
BstDEI CTNAG 2 cut(s) 1074, 1308
BstDSI CCRYGG 1 cut(s) 457
BstEII GGTNACC 1 cut(s) 881
BstF5I GGATG 2 cut(s) 286, 1290
BstFNI CGCG 1 cut(s) 476
BstHHI GCGC 1 cut(s) 478
BstKTI GATC 5 cut(s) 214, 802, 852, 1042, 1222
BstMAI GTCTC 1 cut(s) 760
BstMBI GATC 5 cut(s) 211, 799, 849, 1039, 1219
BstMWI GCNNNNNNNGC 1 cut(s) 569
BstNI CCWGG 1 cut(s) 371
BstPI GGTNACC 1 cut(s) 881
BstSCI CCNGG 1 cut(s) 369
BstSLI GKGCMC 2 cut(s) 190, 778
BstUI CGCG 1 cut(s) 476
BstV1I GCAGC 2 cut(s) 292, 596
BstV2I GAAGAC 4 cut(s) 113, 431, 701, 1137
BstX2I RGATCY 1 cut(s) 849
BstYI RGATCY 1 cut(s) 849
Bsu15I ATCGAT 2 cut(s) 234, 822
BsuI GTATCC 1 cut(s) 457
BsuRI GGCC 3 cut(s) 300, 604, 663
BsuTUI ATCGAT 2 cut(s) 234, 822
BtgI CCRYGG 1 cut(s) 457
BtsCI GGATG 2 cut(s) 286, 1290
BtsI GCAGTG 1 cut(s) 757
BtsIMutI CAGTG 2 cut(s) 190, 757
Cac8I GCNNGC 2 cut(s) 561, 1055
CciI TCATGA 1 cut(s) 1153
CfoI GCGC 1 cut(s) 478
Cfr13I GGNCC 2 cut(s) 602, 662
ClaI ATCGAT 2 cut(s) 234, 822
Csp6I GTAC 1 cut(s) 1009
CspCI CAANNNNNGTGG 2 cut(s) 439, 474
CviAII CATG 3 cut(s) 296, 1154, 1199
CviQI GTAC 1 cut(s) 1009
DdeI CTNAG 2 cut(s) 1074, 1308
DpnI GATC 5 cut(s) 213, 801, 851, 1041, 1221
DpnII GATC 5 cut(s) 211, 799, 849, 1039, 1219
DraIII CACNNNGTG 1 cut(s) 185
Eam1104I CTCTTC 1 cut(s) 549
EarI CTCTTC 1 cut(s) 549
Eco24I GRGCYC 1 cut(s) 1292
Eco32I GATATC 2 cut(s) 43, 643
Eco57I CTGAAG 2 cut(s) 230, 818
Eco91I GGTNACC 1 cut(s) 881
EcoO65I GGTNACC 1 cut(s) 881
EcoRII CCWGG 1 cut(s) 369
EcoRV GATATC 2 cut(s) 43, 643
EcoT38I GRGCYC 1 cut(s) 1292
FaeI CATG 3 cut(s) 299, 1157, 1202
FalI AAGNNNNNCTT 2 cut(s) 389, 421
FaqI GGGAC 2 cut(s) 857, 1192
FatI CATG 3 cut(s) 295, 1153, 1198
FauNDI CATATG 1 cut(s) 574
FbaI TGATCA 1 cut(s) 1039
FblI GTMKAC 1 cut(s) 265
Fnu4HI GCNGC 3 cut(s) 306, 564, 585
FokI GGATG 2 cut(s) 293, 1297
FriOI GRGCYC 1 cut(s) 1292
Fsp4HI GCNGC 3 cut(s) 306, 564, 585
FspBI CTAG 4 cut(s) 288, 302, 771, 1050
GlaI GCGC 1 cut(s) 477
GluI GCNGC 3 cut(s) 306, 564, 585
GsaI CCCAGC 4 cut(s) 174, 1030, 1098, 1238
GsuI CTGGAG 1 cut(s) 742
HaeIII GGCC 3 cut(s) 300, 604, 663
HhaI GCGC 1 cut(s) 478
Hin1II CATG 3 cut(s) 299, 1157, 1202
Hin6I GCGC 1 cut(s) 476
HinP1I GCGC 1 cut(s) 476
HincII GTYRAC 1 cut(s) 718
HindII GTYRAC 1 cut(s) 718
HinfI GANTC 9 cut(s) 157, 236, 326, 652, 745, 824, 985, 1253, 1304
HphI GGTGA 7 cut(s) 194, 607, 607, 782, 995, 1214, 1229
Hpy166II GTNNAC 2 cut(s) 266, 718
Hpy188I TCNGA 4 cut(s) 419, 849, 1077, 1246
Hpy188III TCNNGA 8 cut(s) 71, 656, 989, 1067, 1154, 1168, 1279, 1301
Hpy8I GTNNAC 2 cut(s) 266, 718
HpyAV CCTTC 6 cut(s) 254, 391, 653, 842, 864, 1073
HpyCH4III ACNGT 5 cut(s) 445, 458, 881, 1019, 1124
HpyCH4IV ACGT 4 cut(s) 534, 579, 1274, 1297
HpyCH4V TGCA 4 cut(s) 284, 584, 689, 1112
HpyF10VI GCNNNNNNNGC 1 cut(s) 569
HpyF3I CTNAG 2 cut(s) 1074, 1308
HpySE526I ACGT 4 cut(s) 534, 579, 1274, 1297
Hsp92II CATG 3 cut(s) 299, 1157, 1202
HspAI GCGC 1 cut(s) 476
Ksp22I TGATCA 1 cut(s) 1039
Kzo9I GATC 5 cut(s) 211, 799, 849, 1039, 1219
LguI GCTCTTC 1 cut(s) 549
Lsp1109I GCAGC 2 cut(s) 292, 596
LweI GCATC 2 cut(s) 271, 698
MaeI CTAG 4 cut(s) 288, 302, 771, 1050
MaeII ACGT 4 cut(s) 534, 579, 1274, 1297
MaeIII GTNAC 2 cut(s) 632, 881
MalI GATC 5 cut(s) 213, 801, 851, 1041, 1221
MboI GATC 5 cut(s) 211, 799, 849, 1039, 1219
MboII GAAGA 8 cut(s) 118, 386, 406, 436, 566, 706, 750, 1142
MflI RGATCY 1 cut(s) 849
MhlI GDGCHC 3 cut(s) 190, 778, 1292
MlyI GAGTC 3 cut(s) 151, 335, 739
MroXI GAANNNNTTC 1 cut(s) 405
MseI TTAA 1 cut(s) 434
MslI CAYNNNNRTG 2 cut(s) 533, 1203
MspR9I CCNGG 1 cut(s) 371
MvaI CCWGG 1 cut(s) 371
MvnI CGCG 1 cut(s) 476
MwoI GCNNNNNNNGC 1 cut(s) 569
NdeI CATATG 1 cut(s) 574
NdeII GATC 5 cut(s) 211, 799, 849, 1039, 1219
NlaIII CATG 3 cut(s) 299, 1157, 1202
NlaIV GGNNCC 1 cut(s) 29
NspV TTCGAA 1 cut(s) 104
PagI TCATGA 1 cut(s) 1153
PciSI GCTCTTC 1 cut(s) 549
PdmI GAANNNNTTC 1 cut(s) 405
PfeI GAWTC 6 cut(s) 236, 652, 824, 985, 1253, 1304
PkrI GCNGC 3 cut(s) 307, 565, 586
PleI GAGTC 3 cut(s) 151, 334, 739
PpsI GAGTC 3 cut(s) 151, 334, 739
Ppu21I YACGTR 1 cut(s) 535
Psp1406I AACGTT 1 cut(s) 1274
Psp6I CCWGG 1 cut(s) 369
PspEI GGTNACC 1 cut(s) 881
PspFI CCCAGC 4 cut(s) 170, 1026, 1094, 1234
PspGI CCWGG 1 cut(s) 369
PspN4I GGNNCC 1 cut(s) 29
PspPI GGNCC 2 cut(s) 602, 662
PsrI GAACNNNNNNTAC 2 cut(s) 532, 564
PsuI RGATCY 1 cut(s) 849
RsaI GTAC 1 cut(s) 1010
RsaNI GTAC 1 cut(s) 1009
RseI CAYNNNNRTG 2 cut(s) 533, 1203
SapI GCTCTTC 1 cut(s) 549
SaqAI TTAA 1 cut(s) 434
SatI GCNGC 3 cut(s) 306, 564, 585
Sau3AI GATC 5 cut(s) 211, 799, 849, 1039, 1219
Sau96I GGNCC 2 cut(s) 602, 662
ScaI AGTACT 1 cut(s) 1010
SchI GAGTC 3 cut(s) 151, 335, 739
ScrFI CCNGG 1 cut(s) 371
SduI GDGCHC 3 cut(s) 190, 778, 1292
SfaNI GCATC 2 cut(s) 271, 698
SfuI TTCGAA 1 cut(s) 104
SmiMI CAYNNNNRTG 2 cut(s) 533, 1203
SmlI CTYRAG 1 cut(s) 1279
SmoI CTYRAG 1 cut(s) 1279
SsiI CCGC 3 cut(s) 118, 564, 706
SspMI CTAG 4 cut(s) 288, 302, 771, 1050
StyD4I CCNGG 1 cut(s) 369
TaaI ACNGT 5 cut(s) 445, 458, 881, 1019, 1124
TaiI ACGT 4 cut(s) 537, 582, 1277, 1300
TaqI TCGA 5 cut(s) 104, 234, 692, 822, 1167
TatI WGTACW 1 cut(s) 1008
TauI GCSGC 1 cut(s) 566
TfiI GAWTC 6 cut(s) 236, 652, 824, 985, 1253, 1304
Tru1I TTAA 1 cut(s) 434
Tru9I TTAA 1 cut(s) 434
TscAI CASTG 2 cut(s) 190, 757
TseI GCWGC 2 cut(s) 305, 584
TspDTI ATGAA 4 cut(s) 248, 395, 1142, 1187
TspGWI ACGGA 2 cut(s) 336, 566
TspRI CASTG 2 cut(s) 190, 757
XapI RAATTY 2 cut(s) 340, 668
XmiI GTMKAC 1 cut(s) 265
XmnI GAANNNNTTC 1 cut(s) 405
XspI CTAG 4 cut(s) 288, 302, 771, 1050
ZrmI AGTACT 1 cut(s) 1010
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.