Rroxscaffold_2G00103490

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
26219515 .. 26233900
14386 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00103490.1

Sequence Viewer

Length: 645 bp
ATGTCTCTCTCAGGCTTCATTAGCATAGATTGTGGCAAATCGGGTTCTAGCTATACTGAAAAGGTTATTGGAATTACTTGCATTTCAGACTCAAACTTCATCAACACTGGTGAAAGTAACTTCATATCGGATAAATATTTGGATGTCTATCAACAACCATACCAATCTCTCAGGAGCTTCCCTCAAGGCATCAGGAACTGCTACAAAATAAACAATACGAGTGGAACCAAATATTTGATACGAGCAATATTCGTGTATGGGAATTATGTTGGGCAGGACAAGTTACCAAAATTCAATCTGTATGTTGGACCAAATTTGTGGGATTCAGTGAAGCTGATGAACGCATCCATTGGCATAACTAAGGAGCTCATACATTATGTCCCAAGGCCCAGAAACTATATACAACTTTGTCTGGTGAACAAGCTCTCTGGAATTCCATTTGTATCAGCAATAGAGTTGAGGCCTCTTCCTAACTCAACTTATTCAACTGAAGAGGAGGCAAATGGGCAAAAAGAGTTGGCCGTGAAGTTCACTAGACCCATGAATCAAACTTGGTACTCATTTGCCTTATCCCTTCTCTCCTCATTACATATTGGTGGTGATCCCAAAAGATCTCGAAAAGGTGCTTATACAGCTTACACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

214

Amino Acids

24.05

Weight (kDa)

9.25

Isoelectric Point (pI)

38.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 9 - 168 1.5e-54 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07560 AT1G51790 AT1G51790 AT1G51790 AT1G51800 AT1G51805 AT1G51805 AT1G51810 AT1G51820 AT1G51820 AT1G51830 AT1G51830 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51840 AT1G51850 AT1G51850 AT1G51860 AT1G51860 AT1G51870 AT1G51870 AT1G51880 AT1G51880 AT1G51880 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51890 AT1G51910 AT2G04300 AT2G04300 AT2G28960 AT2G28960 AT2G28970 AT2G28970 AT2G28990 AT2G28990 AT2G29000 AT3G21340 AT3G46350 AT5G59616 AT5G59650 AT5G59650 AT5G59660 AT5G59660 AT5G59660 AT5G59670 AT5G59670 AT5G59680
fragaria_vesca FvH4_2g03270 FvH4_3g21300 FvH4_6g32660 FvH4_6g32660 FvH4_6g32670 FvH4_6g32670 FvH4_6g32690 FvH4_6g32690 FvH4_6g32691 FvH4_6g32700 FvH4_6g32740 FvH4_6g32750 FvH4_6g33210 FvH4_6g33210 FvH4_7g24270 FvH4_7g24280 FvH4_7g24291 FvH4_7g24300
malus_domestica MD09G1198400.v1.1 MD09G1198600.v1.1 MD09G1199100.v1.1 MD09G1199200.v1.1 MD09G1199300.v1.1 MD09G1199500.v1.1 MD09G1199600.v1.1 MD17G1179300.v1.1 MD17G1180200.v1.1 MD17G1266000.v1.1
prunus_persica Prupe.1G438900_v2.0.a1 Prupe.1G439000_v2.0.a1 Prupe.1G439100_v2.0.a1 Prupe.3G019400_v2.0.a1 Prupe.3G021900_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G054500_v2.0.a1 Prupe.3G055100_v2.0.a1 Prupe.3G055400_v2.0.a1 Prupe.3G055500_v2.0.a1 Prupe.3G055600_v2.0.a1 Prupe.3G055700_v2.0.a1 Prupe.3G055800_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G055900_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056000_v2.0.a1 Prupe.3G056100_v2.0.a1 Prupe.3G209600_v2.0.a1 Prupe.3G209700_v2.0.a1 Prupe.6G291100_v2.0.a1 Prupe.7G208900_v2.0.a1 Prupe.8G038300_v2.0.a1
pyrus_communis pycom09g11570 pycom09g11580 pycom09g11610 pycom09g11630 pycom09g11640 pycom17g18840 pycom17g18910 pycom17g18930 pycom17g18940
rosa_chinensis RchiOBHm_Chr1g0317521 RchiOBHm_Chr1g0317541 RchiOBHm_Chr2g0123351 RchiOBHm_Chr2g0141181 RchiOBHm_Chr2g0141191 RchiOBHm_Chr2g0141211 RchiOBHm_Chr2g0141221 RchiOBHm_Chr2g0141261 RchiOBHm_Chr2g0141271 RchiOBHm_Chr2g0141311 RchiOBHm_Chr2g0141331 RchiOBHm_Chr2g0141371 RchiOBHm_Chr2g0141391 RchiOBHm_Chr2g0141401 RchiOBHm_Chr2g0141431 RchiOBHm_Chr2g0141481 RchiOBHm_Chr2g0141491 RchiOBHm_Chr2g0141591 RchiOBHm_Chr2g0141601 RchiOBHm_Chr2g0141611 RchiOBHm_Chr2g0141631 RchiOBHm_Chr2g0141641 RchiOBHm_Chr2g0141661 RchiOBHm_Chr2g0141681 RchiOBHm_Chr2g0141701 RchiOBHm_Chr2g0141781 RchiOBHm_Chr2g0141811 RchiOBHm_Chr2g0141821 RchiOBHm_Chr3g0479311 RchiOBHm_Chr3g0495751 RchiOBHm_Chr4g0404741 RchiOBHm_Chr4g0410341 RchiOBHm_Chr4g0418371 RchiOBHm_Chr4g0438651 RchiOBHm_Chr5g0036411 RchiOBHm_Chr5g0036491 RchiOBHm_Chr5g0042391 RchiOBHm_Chr6g0279871 RchiOBHm_Chr7g0192921 RchiOBHm_Chr7g0214901 RchiOBHm_Chr7g0234931
rosa_laevigata RLG00000003432 RLG00000008806 RLG00000013062 RLG00000019514 RLG00000019923 RLG00000019924 RLG00000019925 RLG00000019930 RLG00000019931 RLG00000019934 RLG00000019937 RLG00000019938 RLG00000033697
rosa_multiflora Rmu_co8002302.1_g000001 Rmu_sc0000147.1_g000031 Rmu_sc0000463.1_g000005 Rmu_sc0000712.1_g000003 Rmu_sc0001483.1_g000017 Rmu_sc0001554.1_g000002 Rmu_sc0001554.1_g000005 Rmu_sc0001554.1_g000008 Rmu_sc0001981.1_g000017 Rmu_sc0002040.1_g000056 Rmu_sc0002755.1_g000018 Rmu_sc0002804.1_g000016 Rmu_sc0002928.1_g000015 Rmu_sc0003040.1_g000008 Rmu_sc0003040.1_g000018 Rmu_sc0004512.1_g000001 Rmu_sc0004512.1_g000004 Rmu_sc0005507.1_g000001 Rmu_sc0005507.1_g000009 Rmu_sc0005507.1_g000033 Rmu_sc0005507.1_g000037 Rmu_sc0005507.1_g000043 Rmu_sc0005507.1_g000047 Rmu_sc0006318.1_g000004 Rmu_sc0006318.1_g000014 Rmu_sc0006318.1_g000021 Rmu_sc0006556.1_g000001 Rmu_sc0007208.1_g000002 Rmu_sc0007208.1_g000003 Rmu_sc0007208.1_g000006 Rmu_sc0007208.1_g000008
rosa_roxburghii Rroxscaffold_1G00044430 Rroxscaffold_2G00103420 Rroxscaffold_2G00103470 Rroxscaffold_2G00103490 Rroxscaffold_2G00103500 Rroxscaffold_2G00103520 Rroxscaffold_2G00103530 Rroxscaffold_2G00103540 Rroxscaffold_2G00103550 Rroxscaffold_2G00103570 Rroxscaffold_2G00103770 Rroxscaffold_2G00103780 Rroxscaffold_2G00103800 Rroxscaffold_2G00103820 Rroxscaffold_2G00103860 Rroxscaffold_2G00103890 Rroxscaffold_2G00103930 Rroxscaffold_2G00103940 Rroxscaffold_2G00104010 Rroxscaffold_2G00104030 Rroxscaffold_2G00104050 Rroxscaffold_2G00104060 Rroxscaffold_2G00104070 Rroxscaffold_2G00104090 Rroxscaffold_2G00104100 Rroxscaffold_2G00104120 Rroxscaffold_2G00104130 Rroxscaffold_4G00331710
rosa_rugosa Rorug02G0367500 Rorug02G0367500 Rorug02G0367600 Rorug02G0367800 Rorug02G0367800 Rorug02G0367900 Rorug02G0368100 Rorug02G0368100 Rorug02G0368100 Rorug02G0368200 Rorug02G0368700 Rorug02G0368900 Rorug05G0155600 Rorug05G0155700 Rorug05G0155800 Rorug05G0156700 Rorug05G0157300
rosa_samantha Rh1AG028000 Rh2AG418700 Rh2AG418900 Rh2AG419000 Rh2AG419100 Rh2AG419400 Rh2AG419600 Rh2AG419800 Rh2AG420400 Rh2AG421000 Rh2BG428500 Rh2BG428600 Rh2BG428800 Rh2BG428900 Rh2BG429300 Rh2BG429400 Rh2BG429700 Rh2BG429900 Rh2BG430000 Rh2BG430700 Rh2CG405100 Rh2CG405200 Rh2CG405300 Rh2CG405500 Rh2CG405600 Rh2CG405700 Rh2CG406000 Rh2CG406100 Rh2CG406300 Rh2CG406600 Rh2CG406700 Rh2CG407500 Rh2CG408100 Rh2DG438500 Rh3DG123900 Rh3DG124000 Rh5BG249700 Rh5BG482500 Rh5CG281500 Rh5CG507300 Rh7DG133300
rosa_wichuraiana Rw0G019720 Rw0G019730 Rw0G019750 Rw0G023010 Rw2G034340 Rw2G034350 Rw2G034370 Rw2G034380 Rw2G034400 Rw2G034430 Rw2G034470 Rw2G034480 Rw2G034510 Rw5G022890 Rw5G026410 Rw5G032710 Rw5G042850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 596
AcoI YGGCCR 1 cut(s) 519
AcsI RAATTY 3 cut(s) 290, 313, 432
AcuI CTGAAG 1 cut(s) 510
AfaI GTAC 1 cut(s) 557
AgsI TTSAA 2 cut(s) 295, 486
AjuI GAANNNNNNNTTGG 2 cut(s) 51, 83
AluBI AGCT 6 cut(s) 51, 177, 334, 367, 424, 635
AluI AGCT 6 cut(s) 51, 177, 334, 367, 424, 635
Alw21I GWGCWC 1 cut(s) 369
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 596
AlwNI CAGNNNCTG 1 cut(s) 198
AoxI GGCC 3 cut(s) 386, 461, 519
ApoI RAATTY 3 cut(s) 290, 313, 432
AspS9I GGNCC 2 cut(s) 308, 387
AsuHPI GGTGA 3 cut(s) 122, 427, 611
AvaII GGWCC 1 cut(s) 308
BanII GRGCYC 1 cut(s) 369
Bbv12I GWGCWC 1 cut(s) 369
BceAI ACGGC 1 cut(s) 506
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 2 cut(s) 48, 534
BglII AGATCT 1 cut(s) 611
Bme18I GGWCC 1 cut(s) 308
BmgT120I GGNCC 2 cut(s) 308, 387
BmiI GGNNCC 1 cut(s) 226
BmsI GCATC 2 cut(s) 198, 353
BplI GAGNNNNNCTC 2 cut(s) 166, 198
BpuEI CTTGAG 1 cut(s) 168
BsaBI GATNNNNATC 1 cut(s) 147
BsaJI CCNNGG 1 cut(s) 383
Bse1I ACTGG 1 cut(s) 112
Bse8I GATNNNNATC 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 383
BseGI GGATG 2 cut(s) 148, 344
BseJI GATNNNNATC 1 cut(s) 147
BseMII CTCAG 2 cut(s) 24, 184
BseNI ACTGG 1 cut(s) 112
BseRI GAGGAG 2 cut(s) 509, 571
BshFI GGCC 3 cut(s) 388, 463, 521
BsiHKAI GWGCWC 1 cut(s) 369
BslFI GGGAC 1 cut(s) 365
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 365
BsnI GGCC 3 cut(s) 388, 463, 521
Bsp1286I GDGCHC 1 cut(s) 369
Bsp143I GATC 2 cut(s) 601, 611
BspANI GGCC 3 cut(s) 388, 463, 521
BspCNI CTCAG 2 cut(s) 23, 183
BspLI GGNNCC 1 cut(s) 226
BspPI GGATC 1 cut(s) 596
BsrI ACTGG 1 cut(s) 112
BssECI CCNNGG 1 cut(s) 383
BssMI GATC 2 cut(s) 601, 611
BssT1I CCWWGG 1 cut(s) 383
Bst6I CTCTTC 2 cut(s) 471, 486
BstDEI CTNAG 3 cut(s) 10, 170, 360
BstF5I GGATG 2 cut(s) 148, 344
BstKTI GATC 2 cut(s) 604, 614
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 2 cut(s) 601, 611
BstMWI GCNNNNNNNGC 2 cut(s) 21, 632
BstX2I RGATCY 1 cut(s) 611
BstXI CCANNNNNNTGG 1 cut(s) 318
BstYI RGATCY 1 cut(s) 611
BsuRI GGCC 3 cut(s) 388, 463, 521
BtsCI GGATG 2 cut(s) 148, 344
BtsIMutI CAGTG 2 cut(s) 105, 333
CaiI CAGNNNCTG 1 cut(s) 198
Cfr13I GGNCC 2 cut(s) 308, 387
Csp6I GTAC 1 cut(s) 556
CspCI CAANNNNNGTGG 2 cut(s) 202, 237
CviAII CATG 1 cut(s) 541
CviQI GTAC 1 cut(s) 556
DdeI CTNAG 3 cut(s) 10, 170, 360
DpnI GATC 2 cut(s) 603, 613
DpnII GATC 2 cut(s) 601, 611
EaeI YGGCCR 1 cut(s) 519
Eam1104I CTCTTC 2 cut(s) 471, 486
EarI CTCTTC 2 cut(s) 471, 486
Ecl136II GAGCTC 1 cut(s) 367
Eco130I CCWWGG 1 cut(s) 383
Eco147I AGGCCT 1 cut(s) 463
Eco24I GRGCYC 1 cut(s) 369
Eco47I GGWCC 1 cut(s) 308
Eco53kI GAGCTC 1 cut(s) 367
Eco57I CTGAAG 1 cut(s) 510
EcoICRI GAGCTC 1 cut(s) 367
EcoRI GAATTC 1 cut(s) 432
EcoT14I CCWWGG 1 cut(s) 383
EcoT38I GRGCYC 1 cut(s) 369
ErhI CCWWGG 1 cut(s) 383
FaeI CATG 1 cut(s) 544
FaqI GGGAC 1 cut(s) 365
FatI CATG 1 cut(s) 540
FokI GGATG 2 cut(s) 155, 331
FriOI GRGCYC 1 cut(s) 369
FspBI CTAG 2 cut(s) 48, 534
HaeIII GGCC 3 cut(s) 388, 463, 521
Hin1II CATG 1 cut(s) 544
HinfI GANTC 3 cut(s) 89, 323, 544
HphI GGTGA 3 cut(s) 122, 427, 611
Hpy166II GTNNAC 2 cut(s) 418, 531
Hpy188I TCNGA 2 cut(s) 88, 130
Hpy188III TCNNGA 4 cut(s) 172, 193, 429, 615
Hpy8I GTNNAC 2 cut(s) 418, 531
HpyAV CCTTC 1 cut(s) 584
HpyCH4V TGCA 1 cut(s) 81
HpyF10VI GCNNNNNNNGC 2 cut(s) 21, 632
HpyF3I CTNAG 3 cut(s) 10, 170, 360
Hsp92II CATG 1 cut(s) 544
Kzo9I GATC 2 cut(s) 601, 611
LmnI GCTCC 2 cut(s) 174, 364
LpnPI CCDG 7 cut(s) 93, 157, 178, 260, 398, 403, 414
LweI GCATC 2 cut(s) 198, 353
MaeI CTAG 2 cut(s) 48, 534
MaeIII GTNAC 2 cut(s) 116, 282
MalI GATC 2 cut(s) 603, 613
MboI GATC 2 cut(s) 601, 611
MboII GAAGA 2 cut(s) 458, 503
MflI RGATCY 1 cut(s) 611
MhlI GDGCHC 1 cut(s) 369
MluCI AATT 5 cut(s) 72, 262, 290, 313, 432
MlyI GAGTC 1 cut(s) 83
MmeI TCCRAC 1 cut(s) 286
MnlI CCTC 6 cut(s) 192, 453, 474, 487, 490, 592
MslI CAYNNNNRTG 1 cut(s) 594
MwoI GCNNNNNNNGC 2 cut(s) 21, 632
NdeII GATC 2 cut(s) 601, 611
NlaIII CATG 1 cut(s) 544
NlaIV GGNNCC 1 cut(s) 226
PceI AGGCCT 1 cut(s) 463
PfeI GAWTC 2 cut(s) 323, 544
PleI GAGTC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 83
Psp124BI GAGCTC 1 cut(s) 369
PspN4I GGNNCC 1 cut(s) 226
PspPI GGNCC 2 cut(s) 308, 387
PstNI CAGNNNCTG 1 cut(s) 198
PsuI RGATCY 1 cut(s) 611
RsaI GTAC 1 cut(s) 557
RsaNI GTAC 1 cut(s) 556
RseI CAYNNNNRTG 1 cut(s) 594
SacI GAGCTC 1 cut(s) 369
Sau3AI GATC 2 cut(s) 601, 611
Sau96I GGNCC 2 cut(s) 308, 387
SchI GAGTC 1 cut(s) 83
SduI GDGCHC 1 cut(s) 369
SetI ASST 8 cut(s) 53, 66, 179, 336, 369, 426, 625, 637
SfaNI GCATC 2 cut(s) 198, 353
SinI GGWCC 1 cut(s) 308
SmiMI CAYNNNNRTG 1 cut(s) 594
SmlI CTYRAG 1 cut(s) 183
SmoI CTYRAG 1 cut(s) 183
Sse9I AATT 5 cut(s) 72, 262, 290, 313, 432
SseBI AGGCCT 1 cut(s) 463
SspI AATATT 3 cut(s) 137, 233, 249
SspMI CTAG 2 cut(s) 48, 534
SstI GAGCTC 1 cut(s) 369
StuI AGGCCT 1 cut(s) 463
StyI CCWWGG 1 cut(s) 383
TaqI TCGA 1 cut(s) 616
TasI AATT 5 cut(s) 72, 262, 290, 313, 432
TfiI GAWTC 2 cut(s) 323, 544
TscAI CASTG 2 cut(s) 112, 333
TspDTI ATGAA 5 cut(s) 7, 88, 112, 353, 557
TspRI CASTG 2 cut(s) 112, 333
VpaK11BI GGWCC 1 cut(s) 308
XapI RAATTY 3 cut(s) 290, 313, 432
XspI CTAG 2 cut(s) 48, 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.