Rmu_sc0042767.1_g000001
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0042767.1
OG0030961
Physical Location & Seq
Forward (+)
1 .. 601
601 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0042767.1_g000001.1.cds

Sequence Viewer

Length: 410 bp
agaaacaaaccaccgcaacaacatggacgacgttggaggagctcctcctcgcctgcgccatccgccgctacgacactcaaagatgggactccttcgtcgcccaattcctcaagcgcagttccaacctccgccgcctcactcctcagatatgcaaacgcaagttccacgacctccgacgcctcttcaaccacctcaaagacgccatttgcaacgatgacgacgccaacgacgcatcctctcctattccatggctcgatcgtccgcgactgttcagatcggagatagagaaaagtcccagtttctccttccacgatgacgaatcctcatatgatggtggcccagggctcaatgatggagaagccagcggtgatggtcgcgaagccaccaaggagttgcagtggccggaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain Myb_DNA-binding

Protein Analysis

135

Amino Acids

15.62

Weight (kDa)

5.65

Isoelectric Point (pI)

73.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030961)

Species Orthologous Gene IDs
rosa_laevigata RLG00000034272
rosa_multiflora Rmu_sc0042767.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 94
AccII CGCG 2 cut(s) 264, 377
AciI CCGC 7 cut(s) 14, 63, 66, 129, 132, 262, 365
AcoI YGGCCR 1 cut(s) 400
AcyI GRCGYC 3 cut(s) 177, 200, 221
AgsI TTSAA 1 cut(s) 186
AjnI CCWGG 1 cut(s) 339
AluBI AGCT 1 cut(s) 42
AluI AGCT 1 cut(s) 42
Alw21I GWGCWC 1 cut(s) 44
AoxI GGCC 2 cut(s) 336, 400
AspLEI GCGC 2 cut(s) 58, 116
AspS9I GGNCC 1 cut(s) 337
AsuHPI GGTGA 1 cut(s) 379
BanII GRGCYC 2 cut(s) 44, 347
Bbv12I GWGCWC 1 cut(s) 44
BccI CCATC 5 cut(s) 67, 77, 325, 346, 364
BciT130I CCWGG 1 cut(s) 341
BisI GCNGC 2 cut(s) 66, 132
BlsI GCNGC 2 cut(s) 67, 133
Bme1390I CCNGG 1 cut(s) 341
BmgT120I GGNCC 1 cut(s) 337
BmrFI CCNGG 1 cut(s) 341
BmrI ACTGGG 1 cut(s) 290
BmsI GCATC 1 cut(s) 241
BmuI ACTGGG 1 cut(s) 290
BpuEI CTTGAG 1 cut(s) 94
BsaHI GRCGYC 3 cut(s) 177, 200, 221
BsaJI CCNNGG 4 cut(s) 247, 339, 340, 386
BsaXI ACNNNNNCTCC 1 cut(s) 382
Bse1I ACTGG 1 cut(s) 296
BseBI CCWGG 1 cut(s) 341
BseDI CCNNGG 4 cut(s) 247, 339, 340, 386
BseGI GGATG 2 cut(s) 59, 232
BseMII CTCAG 1 cut(s) 157
BseNI ACTGG 1 cut(s) 296
BseRI GAGGAG 4 cut(s) 34, 37, 52, 131
Bsh1236I CGCG 2 cut(s) 264, 377
Bsh1285I CGRYCG 1 cut(s) 258
BshFI GGCC 2 cut(s) 338, 402
BsiEI CGRYCG 1 cut(s) 258
BsiHKAI GWGCWC 1 cut(s) 44
BsiSI CCGG 1 cut(s) 403
BslFI GGGAC 2 cut(s) 100, 278
BsmFI GGGAC 2 cut(s) 100, 278
BsnI GGCC 2 cut(s) 338, 402
Bsp1286I GDGCHC 2 cut(s) 44, 347
Bsp143I GATC 2 cut(s) 255, 274
Bsp19I CCATGG 1 cut(s) 247
Bsp68I TCGCGA 1 cut(s) 377
BspACI CCGC 7 cut(s) 14, 63, 66, 129, 132, 262, 365
BspANI GGCC 2 cut(s) 338, 402
BspCNI CTCAG 1 cut(s) 156
BspFNI CGCG 2 cut(s) 264, 377
BsrI ACTGG 1 cut(s) 296
BssECI CCNNGG 4 cut(s) 247, 339, 340, 386
BssMI GATC 2 cut(s) 255, 274
BssNI GRCGYC 3 cut(s) 177, 200, 221
BssT1I CCWWGG 2 cut(s) 247, 386
Bst2UI CCWGG 1 cut(s) 341
Bst4CI ACNGT 1 cut(s) 269
Bst6I CTCTTC 1 cut(s) 187
BstACI GRCGYC 3 cut(s) 177, 200, 221
BstC8I GCNNGC 2 cut(s) 54, 363
BstDEI CTNAG 1 cut(s) 143
BstDSI CCRYGG 1 cut(s) 247
BstF5I GGATG 2 cut(s) 59, 232
BstFNI CGCG 2 cut(s) 264, 377
BstHHI GCGC 2 cut(s) 58, 116
BstKTI GATC 2 cut(s) 258, 277
BstMBI GATC 2 cut(s) 255, 274
BstMCI CGRYCG 1 cut(s) 258
BstMWI GCNNNNNNNGC 2 cut(s) 62, 229
BstNI CCWGG 1 cut(s) 341
BstSCI CCNGG 1 cut(s) 339
BstUI CGCG 2 cut(s) 264, 377
BsuRI GGCC 2 cut(s) 338, 402
BtgI CCRYGG 1 cut(s) 247
BtsCI GGATG 2 cut(s) 59, 232
BtsI GCAGTG 1 cut(s) 403
BtsIMutI CAGTG 1 cut(s) 403
BtuMI TCGCGA 1 cut(s) 377
Cac8I GCNNGC 2 cut(s) 54, 363
CfoI GCGC 2 cut(s) 58, 116
Cfr13I GGNCC 1 cut(s) 337
CseI GACGC 4 cut(s) 185, 208, 229, 238
CviAII CATG 2 cut(s) 23, 248
CviJI RGCY 7 cut(s) 42, 252, 338, 345, 361, 382, 402
CviKI_1 RGCY 7 cut(s) 42, 252, 338, 345, 361, 382, 402
DdeI CTNAG 1 cut(s) 143
DpnI GATC 2 cut(s) 257, 276
DpnII GATC 2 cut(s) 255, 274
DrdI GACNNNNNNGTC 1 cut(s) 94
DseDI GACNNNNNNGTC 1 cut(s) 94
EaeI YGGCCR 1 cut(s) 400
Eam1104I CTCTTC 1 cut(s) 187
EarI CTCTTC 1 cut(s) 187
EciI GGCGGA 2 cut(s) 52, 118
Ecl136II GAGCTC 1 cut(s) 42
Eco130I CCWWGG 2 cut(s) 247, 386
Eco24I GRGCYC 2 cut(s) 44, 347
Eco53kI GAGCTC 1 cut(s) 42
EcoICRI GAGCTC 1 cut(s) 42
EcoRII CCWGG 1 cut(s) 339
EcoT14I CCWWGG 2 cut(s) 247, 386
EcoT38I GRGCYC 2 cut(s) 44, 347
ErhI CCWWGG 2 cut(s) 247, 386
FaeI CATG 2 cut(s) 26, 251
FaiI YATR 5 cut(s) 24, 150, 249, 327, 329
FaqI GGGAC 2 cut(s) 100, 278
FatI CATG 2 cut(s) 22, 247
FauNDI CATATG 1 cut(s) 327
Fnu4HI GCNGC 2 cut(s) 66, 132
FokI GGATG 2 cut(s) 46, 219
FriOI GRGCYC 2 cut(s) 44, 347
Fsp4HI GCNGC 2 cut(s) 66, 132
GlaI GCGC 2 cut(s) 57, 115
GluI GCNGC 2 cut(s) 66, 132
HaeIII GGCC 2 cut(s) 338, 402
HapII CCGG 1 cut(s) 403
HgaI GACGC 4 cut(s) 185, 208, 229, 238
HhaI GCGC 2 cut(s) 58, 116
Hin1I GRCGYC 3 cut(s) 177, 200, 221
Hin1II CATG 2 cut(s) 26, 251
Hin6I GCGC 2 cut(s) 56, 114
HinP1I GCGC 2 cut(s) 56, 114
HinfI GANTC 2 cut(s) 88, 319
HpaII CCGG 1 cut(s) 403
HphI GGTGA 1 cut(s) 379
Hpy188I TCNGA 4 cut(s) 146, 175, 274, 279
Hpy188III TCNNGA 1 cut(s) 376
Hpy99I CGWCG 5 cut(s) 33, 100, 179, 223, 232
HpyAV CCTTC 2 cut(s) 102, 315
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4IV ACGT 1 cut(s) 31
HpyCH4V TGCA 3 cut(s) 152, 209, 396
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 229
HpyF3I CTNAG 1 cut(s) 143
HpySE526I ACGT 1 cut(s) 31
Hsp92I GRCGYC 3 cut(s) 177, 200, 221
Hsp92II CATG 2 cut(s) 26, 251
HspAI GCGC 2 cut(s) 56, 114
Kzo9I GATC 2 cut(s) 255, 274
LmnI GCTCC 2 cut(s) 39, 47
LpnPI CCDG 5 cut(s) 66, 309, 326, 353, 375
LweI GCATC 1 cut(s) 241
MaeII ACGT 1 cut(s) 31
MalI GATC 2 cut(s) 257, 276
MboI GATC 2 cut(s) 255, 274
MboII GAAGA 1 cut(s) 174
MhlI GDGCHC 2 cut(s) 44, 347
MluCI AATT 1 cut(s) 103
MlyI GAGTC 1 cut(s) 82
MmeI TCCRAC 3 cut(s) 14, 146, 198
MspA1I CMGCKG 1 cut(s) 365
MspI CCGG 1 cut(s) 403
MspR9I CCNGG 1 cut(s) 341
MvaI CCWGG 1 cut(s) 341
MvnI CGCG 2 cut(s) 264, 377
MwoI GCNNNNNNNGC 2 cut(s) 62, 229
NcoI CCATGG 1 cut(s) 247
NdeI CATATG 1 cut(s) 327
NdeII GATC 2 cut(s) 255, 274
NlaIII CATG 2 cut(s) 26, 251
NruI TCGCGA 1 cut(s) 377
PasI CCCWGGG 1 cut(s) 340
PcsI WCGNNNNNNNCGW 1 cut(s) 224
PfeI GAWTC 1 cut(s) 319
PkrI GCNGC 2 cut(s) 67, 133
Ple19I CGATCG 1 cut(s) 258
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
Psp124BI GAGCTC 1 cut(s) 44
Psp6I CCWGG 1 cut(s) 339
PspGI CCWGG 1 cut(s) 339
PspPI GGNCC 1 cut(s) 337
PvuI CGATCG 1 cut(s) 258
RruI TCGCGA 1 cut(s) 377
SacI GAGCTC 1 cut(s) 44
SatI GCNGC 2 cut(s) 66, 132
Sau3AI GATC 2 cut(s) 255, 274
Sau96I GGNCC 1 cut(s) 337
SchI GAGTC 1 cut(s) 82
ScrFI CCNGG 1 cut(s) 341
SduI GDGCHC 2 cut(s) 44, 347
SetI ASST 5 cut(s) 34, 44, 128, 173, 194
SfaNI GCATC 1 cut(s) 241
SmlI CTYRAG 1 cut(s) 109
SmoI CTYRAG 1 cut(s) 109
Sse9I AATT 1 cut(s) 103
SsiI CCGC 7 cut(s) 14, 63, 66, 129, 132, 262, 365
SstI GAGCTC 1 cut(s) 44
StyD4I CCNGG 1 cut(s) 339
StyI CCWWGG 2 cut(s) 247, 386
TaaI ACNGT 1 cut(s) 269
TaiI ACGT 1 cut(s) 34
TaqI TCGA 1 cut(s) 254
TasI AATT 1 cut(s) 103
TauI GCSGC 2 cut(s) 68, 134
TfiI GAWTC 1 cut(s) 319
TscAI CASTG 1 cut(s) 403
TspRI CASTG 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.