Rmu_sc0004205.1_g000005

phenolic glucoside malonyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004205.1
OG0025025
Physical Location & Seq
Reverse (-)
18316 .. 18636
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004205.1_g000005.1.cds

Sequence Viewer

Length: 321 bp
atggcaaatccaaatccagtgaaagtagttgaagtttgcagggtagcgccacaaccggcctcagccaagtcacttcctaggactatatacctgcagttgaagtttgtagagaggcctctaaccttctttgatctacattggctgagatttgcacccttccaacgccttttcttttatgaagcctctaaaacagcactcttcttctactccacacttccgaggctcaaaagctctctatcgctggatacctcacctggcctgaagactcccccaagccgattctcagctatgtcaaaggtgacaacgtctcgctcacaatag

Protein Analysis

106

Amino Acids

12.09

Weight (kDa)

10.54

Isoelectric Point (pI)

57.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0025025)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0029341
rosa_multiflora Rmu_sc0004205.1_g000005
rosa_samantha Rh5CG225700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 99
AcuI CTGAAG 1 cut(s) 281
AgsI TTSAA 2 cut(s) 32, 100
AjnI CCWGG 1 cut(s) 253
AluBI AGCT 2 cut(s) 231, 287
AluI AGCT 2 cut(s) 231, 287
Alw26I GTCTC 1 cut(s) 312
AoxI GGCC 3 cut(s) 57, 113, 256
AspA2I CCTAGG 1 cut(s) 77
AspLEI GCGC 1 cut(s) 49
AsuHPI GGTGA 2 cut(s) 243, 310
AvrII CCTAGG 1 cut(s) 77
BbsI GAAGAC 1 cut(s) 269
BbvCI CCTCAGC 1 cut(s) 61
BciT130I CCWGG 1 cut(s) 255
BciVI GTATCC 1 cut(s) 238
BcoDI GTCTC 1 cut(s) 312
BfaI CTAG 1 cut(s) 78
BfmI CTRYAG 1 cut(s) 92
BfoI RGCGCY 1 cut(s) 50
BfuAI ACCTGC 1 cut(s) 99
BfuI GTATCC 1 cut(s) 238
BlnI CCTAGG 1 cut(s) 77
Bme1390I CCNGG 1 cut(s) 255
BmrFI CCNGG 1 cut(s) 255
BpiI GAAGAC 1 cut(s) 269
Bpu10I CCTNAGC 1 cut(s) 61
BsaJI CCNNGG 2 cut(s) 77, 218
Bse118I RCCGGY 1 cut(s) 55
Bse1I ACTGG 1 cut(s) 17
BseBI CCWGG 1 cut(s) 255
BseDI CCNNGG 2 cut(s) 77, 218
BseMII CTCAG 3 cut(s) 75, 134, 297
BseNI ACTGG 1 cut(s) 17
BshFI GGCC 3 cut(s) 59, 115, 258
BsiSI CCGG 1 cut(s) 56
BsmAI GTCTC 1 cut(s) 312
BsmBI CGTCTC 1 cut(s) 312
BsnI GGCC 3 cut(s) 59, 115, 258
Bsp143I GATC 1 cut(s) 130
BspANI GGCC 3 cut(s) 59, 115, 258
BspCNI CTCAG 3 cut(s) 74, 135, 296
BspMAI CTGCAG 1 cut(s) 96
BspMI ACCTGC 1 cut(s) 99
BsrFI RCCGGY 1 cut(s) 55
BsrI ACTGG 1 cut(s) 17
BssAI RCCGGY 1 cut(s) 55
BssECI CCNNGG 2 cut(s) 77, 218
BssMI GATC 1 cut(s) 130
BssT1I CCWWGG 1 cut(s) 77
Bst2UI CCWGG 1 cut(s) 255
Bst6I CTCTTC 1 cut(s) 203
BstDEI CTNAG 3 cut(s) 61, 143, 283
BstH2I RGCGCY 1 cut(s) 50
BstHHI GCGC 1 cut(s) 49
BstKTI GATC 1 cut(s) 133
BstMAI GTCTC 1 cut(s) 312
BstMBI GATC 1 cut(s) 130
BstNI CCWGG 1 cut(s) 255
BstSCI CCNGG 1 cut(s) 253
BstSFI CTRYAG 1 cut(s) 92
BstV2I GAAGAC 1 cut(s) 269
BsuI GTATCC 1 cut(s) 238
BsuRI GGCC 3 cut(s) 59, 115, 258
BtsIMutI CAGTG 1 cut(s) 24
BveI ACCTGC 1 cut(s) 99
CfoI GCGC 1 cut(s) 49
Cfr10I RCCGGY 1 cut(s) 55
DdeI CTNAG 3 cut(s) 61, 143, 283
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 203
EarI CTCTTC 1 cut(s) 203
Eco130I CCWWGG 1 cut(s) 77
Eco147I AGGCCT 1 cut(s) 115
Eco57I CTGAAG 1 cut(s) 281
EcoRII CCWGG 1 cut(s) 253
EcoT14I CCWWGG 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 77
Esp3I CGTCTC 1 cut(s) 312
FaiI YATR 4 cut(s) 86, 88, 177, 290
FspBI CTAG 1 cut(s) 78
GlaI GCGC 1 cut(s) 48
HaeII RGCGCY 1 cut(s) 50
HaeIII GGCC 3 cut(s) 59, 115, 258
HapII CCGG 1 cut(s) 56
HhaI GCGC 1 cut(s) 49
Hin6I GCGC 1 cut(s) 47
HinP1I GCGC 1 cut(s) 47
HinfI GANTC 2 cut(s) 265, 279
HpaII CCGG 1 cut(s) 56
HphI GGTGA 2 cut(s) 243, 310
Hpy188I TCNGA 1 cut(s) 219
HpyAV CCTTC 2 cut(s) 133, 166
HpyCH4IV ACGT 1 cut(s) 305
HpyCH4V TGCA 3 cut(s) 39, 94, 152
HpyF3I CTNAG 3 cut(s) 61, 143, 283
HpySE526I ACGT 1 cut(s) 305
HspAI GCGC 1 cut(s) 47
Kzo9I GATC 1 cut(s) 130
LpnPI CCDG 8 cut(s) 25, 30, 69, 104, 227, 240, 267, 272
MaeI CTAG 1 cut(s) 78
MaeII ACGT 1 cut(s) 305
MaeIII GTNAC 2 cut(s) 69, 298
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 3 cut(s) 190, 193, 274
MlyI GAGTC 1 cut(s) 259
MmeI TCCRAC 1 cut(s) 184
MnlI CCTC 6 cut(s) 70, 105, 126, 193, 213, 259
MspI CCGG 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 255
MvaI CCWGG 1 cut(s) 255
NdeII GATC 1 cut(s) 130
NmuCI GTSAC 2 cut(s) 69, 298
PceI AGGCCT 1 cut(s) 115
PfeI GAWTC 1 cut(s) 279
PflFI GACNNNGTC 1 cut(s) 304
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
Psp6I CCWGG 1 cut(s) 253
PspGI CCWGG 1 cut(s) 253
PstI CTGCAG 1 cut(s) 96
PsyI GACNNNGTC 1 cut(s) 304
Sau3AI GATC 1 cut(s) 130
SchI GAGTC 1 cut(s) 259
ScrFI CCNGG 1 cut(s) 255
SetI ASST 8 cut(s) 93, 125, 233, 251, 256, 289, 300, 308
SfcI CTRYAG 1 cut(s) 92
SseBI AGGCCT 1 cut(s) 115
SspMI CTAG 1 cut(s) 78
StuI AGGCCT 1 cut(s) 115
StyD4I CCNGG 1 cut(s) 253
StyI CCWWGG 1 cut(s) 77
TaiI ACGT 1 cut(s) 308
TfiI GAWTC 1 cut(s) 279
TscAI CASTG 1 cut(s) 24
TseFI GTSAC 2 cut(s) 69, 298
Tsp45I GTSAC 2 cut(s) 69, 298
TspDTI ATGAA 1 cut(s) 192
TspRI CASTG 1 cut(s) 24
Tth111I GACNNNGTC 1 cut(s) 304
XmaJI CCTAGG 1 cut(s) 77
XspI CTAG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.