RchiOBHm_Chr2g0129501

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0018157
Physical Location & Seq
Reverse (-)
45136521 .. 45138769
2249 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50114

Sequence Viewer

Length: 330 bp
ATGGCCGAAACGAAGCGTTTCATCTCCTCGAGTAGGCTGTTAAGCTTGGCCTCGCGAGCCCTATCTGAGATTCAAGTTGAAAATCTAATTGATCCAAGGGAGAGCGAAGGAATTGAATTGACGAGAAAAAGAATGAAGCCTGATGTGACAGTAGCTTTTGTGATCTTTCCTGAGATTGCCGGAAATCTCACCGGAGTAGCTTTTGGTGTTAGTGACAGTAGCTTTTGTGGTCGGCGGAAGTTGGCCGAAAGTCTGTCGAAGACTCACCGGAGTTGGCCAGAAACCTCGCTGGAGAGGAGAGAGAAGATGATTGTTGACTTTTTACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.29

Weight (kDa)

8.97

Isoelectric Point (pI)

55.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018157)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0129501 RchiOBHm_Chr2g0175331
rosa_laevigata RLG00000010884
rosa_multiflora Rmu_ssc0000434.1_g000019
rosa_roxburghii Rroxscaffold_5G00332700
rosa_rugosa Rorug02G0331900
rosa_samantha Rh4AG116200 Rh5AG421800 Rh5BG437500 Rh5CG460200 Rh6BG278000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 55
AciI CCGC 1 cut(s) 235
AclWI GGATC 1 cut(s) 86
AcoI YGGCCR 3 cut(s) 3, 243, 275
AfiI CCNNNNNNNGG 1 cut(s) 33
AgsI TTSAA 3 cut(s) 74, 80, 116
AluBI AGCT 4 cut(s) 45, 155, 200, 222
AluI AGCT 4 cut(s) 45, 155, 200, 222
AlwI GGATC 1 cut(s) 86
Ama87I CYCGRG 1 cut(s) 28
AoxI GGCC 4 cut(s) 3, 48, 243, 275
Asp700I GAANNNNTTC 1 cut(s) 17
AsuHPI GGTGA 2 cut(s) 181, 257
AvaI CYCGRG 1 cut(s) 28
BalI TGGCCA 1 cut(s) 277
BanII GRGCYC 1 cut(s) 61
BbsI GAAGAC 1 cut(s) 266
BfaI CTAG 1 cut(s) 328
BmeT110I CYCGRG 1 cut(s) 28
BpiI GAAGAC 1 cut(s) 266
BpmI CTGGAG 1 cut(s) 311
BsaJI CCNNGG 1 cut(s) 95
BsaWI WCCGGW 2 cut(s) 191, 267
Bsc4I CCNNNNNNNGG 1 cut(s) 33
BseDI CCNNGG 1 cut(s) 95
BseLI CCNNNNNNNGG 1 cut(s) 33
BseMII CTCAG 2 cut(s) 57, 162
BseRI GAGGAG 2 cut(s) 16, 310
Bsh1236I CGCG 1 cut(s) 55
BshFI GGCC 4 cut(s) 5, 50, 245, 277
BsiHKCI CYCGRG 1 cut(s) 28
BsiSI CCGG 3 cut(s) 180, 192, 268
BslI CCNNNNNNNGG 1 cut(s) 33
BsnI GGCC 4 cut(s) 5, 50, 245, 277
BsoBI CYCGRG 1 cut(s) 28
Bsp1286I GDGCHC 1 cut(s) 61
Bsp143I GATC 2 cut(s) 91, 162
Bsp68I TCGCGA 1 cut(s) 55
BspACI CCGC 1 cut(s) 235
BspANI GGCC 4 cut(s) 5, 50, 245, 277
BspCNI CTCAG 2 cut(s) 58, 163
BspFNI CGCG 1 cut(s) 55
BspPI GGATC 1 cut(s) 86
BssECI CCNNGG 1 cut(s) 95
BssMI GATC 2 cut(s) 91, 162
BssT1I CCWWGG 1 cut(s) 95
Bst4CI ACNGT 2 cut(s) 151, 218
BstC8I GCNNGC 1 cut(s) 57
BstDEI CTNAG 2 cut(s) 66, 171
BstENI CCTNNNNNAGG 1 cut(s) 31
BstFNI CGCG 1 cut(s) 55
BstKTI GATC 2 cut(s) 94, 165
BstMBI GATC 2 cut(s) 91, 162
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstUI CGCG 1 cut(s) 55
BstV2I GAAGAC 1 cut(s) 266
BsuRI GGCC 4 cut(s) 5, 50, 245, 277
BtuMI TCGCGA 1 cut(s) 55
Cac8I GCNNGC 1 cut(s) 57
DdeI CTNAG 2 cut(s) 66, 171
DpnI GATC 2 cut(s) 93, 164
DpnII GATC 2 cut(s) 91, 162
EaeI YGGCCR 3 cut(s) 3, 243, 275
EciI GGCGGA 1 cut(s) 250
Eco130I CCWWGG 1 cut(s) 95
Eco24I GRGCYC 1 cut(s) 61
Eco88I CYCGRG 1 cut(s) 28
EcoNI CCTNNNNNAGG 1 cut(s) 31
EcoT14I CCWWGG 1 cut(s) 95
EcoT38I GRGCYC 1 cut(s) 61
ErhI CCWWGG 1 cut(s) 95
FriOI GRGCYC 1 cut(s) 61
FspBI CTAG 1 cut(s) 328
GsuI CTGGAG 1 cut(s) 311
HaeIII GGCC 4 cut(s) 5, 50, 245, 277
HapII CCGG 3 cut(s) 180, 192, 268
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HindIII AAGCTT 1 cut(s) 43
HinfI GANTC 2 cut(s) 70, 262
HpaII CCGG 3 cut(s) 180, 192, 268
HphI GGTGA 2 cut(s) 181, 257
Hpy166II GTNNAC 1 cut(s) 316
Hpy188I TCNGA 1 cut(s) 67
Hpy188III TCNNGA 2 cut(s) 54, 170
Hpy8I GTNNAC 1 cut(s) 316
HpyAV CCTTC 1 cut(s) 101
HpyCH4III ACNGT 2 cut(s) 151, 218
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 2 cut(s) 66, 171
Kzo9I GATC 2 cut(s) 91, 162
LpnPI CCDG 7 cut(s) 153, 183, 193, 205, 275, 281, 291
MaeI CTAG 1 cut(s) 328
MaeIII GTNAC 2 cut(s) 145, 212
MalI GATC 2 cut(s) 93, 164
MboI GATC 2 cut(s) 91, 162
MboII GAAGA 2 cut(s) 271, 316
MhlI GDGCHC 1 cut(s) 61
MlsI TGGCCA 1 cut(s) 277
MluCI AATT 3 cut(s) 87, 111, 116
MluNI TGGCCA 1 cut(s) 277
MlyI GAGTC 1 cut(s) 256
MnlI CCTC 4 cut(s) 37, 61, 288, 295
Mox20I TGGCCA 1 cut(s) 277
MroXI GAANNNNTTC 1 cut(s) 17
MscI TGGCCA 1 cut(s) 277
MseI TTAA 1 cut(s) 41
Msp20I TGGCCA 1 cut(s) 277
MspI CCGG 3 cut(s) 180, 192, 268
MvnI CGCG 1 cut(s) 55
MwoI GCNNNNNNNGC 1 cut(s) 56
NdeII GATC 2 cut(s) 91, 162
NmuCI GTSAC 2 cut(s) 145, 212
NruI TCGCGA 1 cut(s) 55
PaeR7I CTCGAG 1 cut(s) 28
PdmI GAANNNNTTC 1 cut(s) 17
PfeI GAWTC 1 cut(s) 70
PleI GAGTC 1 cut(s) 256
PpsI GAGTC 1 cut(s) 256
PspXI VCTCGAGB 1 cut(s) 28
RruI TCGCGA 1 cut(s) 55
SaqAI TTAA 1 cut(s) 41
Sau3AI GATC 2 cut(s) 91, 162
SchI GAGTC 1 cut(s) 256
SduI GDGCHC 1 cut(s) 61
SetI ASST 5 cut(s) 47, 157, 202, 224, 287
Sfr274I CTCGAG 1 cut(s) 28
SlaI CTCGAG 1 cut(s) 28
SmlI CTYRAG 1 cut(s) 28
SmoI CTYRAG 1 cut(s) 28
Sse9I AATT 3 cut(s) 87, 111, 116
SsiI CCGC 1 cut(s) 235
SspMI CTAG 1 cut(s) 328
StyI CCWWGG 1 cut(s) 95
TaaI ACNGT 2 cut(s) 151, 218
TaqI TCGA 2 cut(s) 29, 257
TasI AATT 3 cut(s) 87, 111, 116
TfiI GAWTC 1 cut(s) 70
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TseFI GTSAC 2 cut(s) 145, 212
Tsp45I GTSAC 2 cut(s) 145, 212
TspDTI ATGAA 2 cut(s) 10, 149
XagI CCTNNNNNAGG 1 cut(s) 31
XhoI CTCGAG 1 cut(s) 28
XmnI GAANNNNTTC 1 cut(s) 17
XspI CTAG 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.