Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0014694

Physical Location & Seq

Genomic Coordinates Reverse (-)

35547099 .. 35548059

Gene Structure 961 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1244800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGAAAAAGCTCTGAAACTCAAAGAGAAGCAAAGCCAAGGCCAACGCCAAGCCATGCAAATATTCCAGAAACAACAACAGCGAGAACCACAAGACCAGATCAAGCTAGCTGCCACTGCCATCACCCTCAACGTACGCTTGAGATCATCCGACATGCCAGCCCACATGCAGAACCATGCTCTCCGCTACACCAGATCACTCATCGACTCACCACTACAGCCAACACCAAACCCCAAAACTCGTCCCAACCCAACTCACCTTGCTCGAGCTCTCAAAAAGTTTGACTCGGTGTATGGACCGGCGTGGCACTGCGTGGTGGGGACGAGTTTTGGATCGTTCGTGACTCACTCAGCCGGTGGGTTCGTGTATTTCTCTGTCGACGACTCGCTGTCGGTGCTTCTCTTCAAAACGGAGGTCCAGTTGGTCACGGAACCACAACCACCACAAGAAGCAAAGCCTTCAACTTTGAGTCCTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005868 GO:0005875 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0008092 GO:0008150 GO:0009987 GO:0010970 GO:0015630 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0030286 GO:0030705 GO:0032781 GO:0032991 GO:0043085 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043462 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0045505 GO:0046907 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051959 GO:0060271 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0099111 GO:0120031 GO:0120036 GO:1902494 GO:2000574 GO:2000576 GO:2000580 GO:2000582

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

160

Amino Acids

17.8

Weight (kDa)

9.65

Isoelectric Point (pI)

53.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynein_light	PF01221	45 - 137	4.8e-23	Dynein light chain type 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014694)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20170
malus_domestica	MD03G1226300.v1.1 MD11G1244800.v1.1
prunus_persica	Prupe.4G183100_v2.0.a1
pyrus_communis	pycom03g17400
rosa_chinensis	RchiOBHm_Chr5g0033981
rosa_laevigata	RLG00000033516
rosa_multiflora	Rmu_co8482145.1_g000001 Rmu_sc0012341.1_g000008 Rmu_sc0014753.1_g000004
rosa_roxburghii	Rroxscaffold_1G00046250
rosa_rugosa	Rorug05G0143900
rosa_samantha	Rh5AG234800 Rh5BG235600 Rh5CG265400 Rh5DG242000
rosa_wichuraiana	Rw5G021480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	378
AciI	CCGC	1 cut(s)	184
AclWI	GGATC	1 cut(s)	340
AdeI	CACNNNGTG	1 cut(s)	313
AfaI	GTAC	1 cut(s)	135
AgsI	TTSAA	2 cut(s)	406, 462
AhdI	GACNNNNNGTC	1 cut(s)	388
AluBI	AGCT	4 cut(s)	11, 106, 110, 269
AluI	AGCT	4 cut(s)	11, 106, 110, 269
Alw21I	GWGCWC	1 cut(s)	271
AlwI	GGATC	1 cut(s)	340
Ama87I	CYCGRG	1 cut(s)	264
AoxI	GGCC	1 cut(s)	40
ApeKI	GCWGC	1 cut(s)	110
ArsI	GACNNNNNNTTYG	2 cut(s)	399, 431
AspS9I	GGNCC	2 cut(s)	296, 415
AsuHPI	GGTGA	3 cut(s)	115, 201, 248
AsuNHI	GCTAGC	1 cut(s)	106
AvaI	CYCGRG	1 cut(s)	264
AvaII	GGWCC	2 cut(s)	296, 415
BanII	GRGCYC	1 cut(s)	271
Bbv12I	GWGCWC	1 cut(s)	271
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	1 cut(s)	128
BfaI	CTAG	1 cut(s)	107
BfmI	CTRYAG	1 cut(s)	215
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
Bme18I	GGWCC	2 cut(s)	296, 415
BmeRI	GACNNNNNGTC	1 cut(s)	388
BmeT110I	CYCGRG	1 cut(s)	264
BmgT120I	GGNCC	2 cut(s)	296, 415
BmiI	GGNNCC	1 cut(s)	432
BmtI	GCTAGC	1 cut(s)	110
BpuEI	CTTGAG	1 cut(s)	160
BsaJI	CCNNGG	1 cut(s)	37
BsaXI	ACNNNNNCTCC	2 cut(s)	404, 434
Bse118I	RCCGGY	2 cut(s)	298, 353
Bse1I	ACTGG	1 cut(s)	418
BseDI	CCNNGG	1 cut(s)	37
BseGI	GGATG	1 cut(s)	146
BseMII	CTCAG	1 cut(s)	363
BseNI	ACTGG	1 cut(s)	418
BseXI	GCAGC	1 cut(s)	97
BshFI	GGCC	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	271
BsiHKCI	CYCGRG	1 cut(s)	264
BsiSI	CCGG	2 cut(s)	299, 354
BsiWI	CGTACG	1 cut(s)	133
BslFI	GGGAC	2 cut(s)	228, 334
BsmFI	GGGAC	2 cut(s)	228, 334
BsnI	GGCC	1 cut(s)	42
BsoBI	CYCGRG	1 cut(s)	264
Bsp1286I	GDGCHC	1 cut(s)	271
Bsp143I	GATC	4 cut(s)	99, 143, 194, 332
BspACI	CCGC	1 cut(s)	184
BspANI	GGCC	1 cut(s)	42
BspCNI	CTCAG	1 cut(s)	362
BspLI	GGNNCC	1 cut(s)	432
BspOI	GCTAGC	1 cut(s)	110
BspPI	GGATC	1 cut(s)	340
BsrFI	RCCGGY	2 cut(s)	298, 353
BsrI	ACTGG	1 cut(s)	418
BssAI	RCCGGY	2 cut(s)	298, 353
BssECI	CCNNGG	1 cut(s)	37
BssMI	GATC	4 cut(s)	99, 143, 194, 332
BssT1I	CCWWGG	1 cut(s)	37
Bst6I	CTCTTC	1 cut(s)	407
BstC8I	GCNNGC	2 cut(s)	108, 159
BstDEI	CTNAG	1 cut(s)	349
BstF5I	GGATG	1 cut(s)	146
BstKTI	GATC	4 cut(s)	102, 146, 197, 335
BstMBI	GATC	4 cut(s)	99, 143, 194, 332
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 394
BstNSI	RCATGY	2 cut(s)	157, 169
BstSFI	CTRYAG	1 cut(s)	215
BstV1I	GCAGC	1 cut(s)	97
BsuRI	GGCC	1 cut(s)	42
BtsCI	GGATG	1 cut(s)	146
BtsI	GCAGTG	2 cut(s)	114, 307
BtsIMutI	CAGTG	2 cut(s)	114, 307
Cac8I	GCNNGC	2 cut(s)	108, 159
Cfr10I	RCCGGY	2 cut(s)	298, 353
Cfr13I	GGNCC	2 cut(s)	296, 415
Csp6I	GTAC	1 cut(s)	134
CviAII	CATG	4 cut(s)	55, 154, 166, 176
CviQI	GTAC	1 cut(s)	134
DdeI	CTNAG	1 cut(s)	349
DpnI	GATC	4 cut(s)	101, 145, 196, 334
DpnII	GATC	4 cut(s)	99, 143, 194, 332
DraIII	CACNNNGTG	1 cut(s)	313
DriI	GACNNNNNGTC	1 cut(s)	388
Eam1104I	CTCTTC	1 cut(s)	407
Eam1105I	GACNNNNNGTC	1 cut(s)	388
EarI	CTCTTC	1 cut(s)	407
Ecl136II	GAGCTC	1 cut(s)	269
Eco130I	CCWWGG	1 cut(s)	37
Eco24I	GRGCYC	1 cut(s)	271
Eco47I	GGWCC	2 cut(s)	296, 415
Eco53kI	GAGCTC	1 cut(s)	269
Eco88I	CYCGRG	1 cut(s)	264
EcoICRI	GAGCTC	1 cut(s)	269
EcoT14I	CCWWGG	1 cut(s)	37
EcoT38I	GRGCYC	1 cut(s)	271
ErhI	CCWWGG	1 cut(s)	37
FaeI	CATG	4 cut(s)	58, 157, 169, 179
FaiI	YATR	5 cut(s)	56, 155, 167, 177, 294
FaqI	GGGAC	2 cut(s)	228, 334
FatI	CATG	4 cut(s)	54, 153, 165, 175
FblI	GTMKAC	1 cut(s)	378
Fnu4HI	GCNGC	1 cut(s)	111
FokI	GGATG	1 cut(s)	133
FriOI	GRGCYC	1 cut(s)	271
Fsp4HI	GCNGC	1 cut(s)	111
FspBI	CTAG	1 cut(s)	107
GluI	GCNGC	1 cut(s)	111
HaeIII	GGCC	1 cut(s)	42
HapII	CCGG	2 cut(s)	299, 354
Hin1II	CATG	4 cut(s)	58, 157, 169, 179
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HinfI	GANTC	5 cut(s)	206, 284, 343, 383, 469
HpaII	CCGG	2 cut(s)	299, 354
HphI	GGTGA	3 cut(s)	115, 201, 248
Hpy166II	GTNNAC	1 cut(s)	379
Hpy188I	TCNGA	2 cut(s)	15, 151
Hpy188III	TCNNGA	2 cut(s)	67, 340
Hpy8I	GTNNAC	1 cut(s)	379
Hpy99I	CGWCG	1 cut(s)	383
HpyAV	CCTTC	1 cut(s)	468
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	2 cut(s)	58, 169
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 394
HpyF3I	CTNAG	1 cut(s)	349
HpySE526I	ACGT	1 cut(s)	132
Hsp92II	CATG	4 cut(s)	58, 157, 169, 179
Kzo9I	GATC	4 cut(s)	99, 143, 194, 332
LpnPI	CCDG	7 cut(s)	80, 110, 171, 205, 312, 367, 431
Lsp1109I	GCAGC	1 cut(s)	97
MaeI	CTAG	1 cut(s)	107
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	2 cut(s)	340, 424
MalI	GATC	4 cut(s)	101, 145, 196, 334
MboI	GATC	4 cut(s)	99, 143, 194, 332
MboII	GAAGA	1 cut(s)	394
MhlI	GDGCHC	1 cut(s)	271
MlyI	GAGTC	5 cut(s)	200, 278, 337, 377, 478
MmeI	TCCRAC	1 cut(s)	174
MnlI	CCTC	2 cut(s)	137, 406
MspI	CCGG	2 cut(s)	299, 354
MwoI	GCNNNNNNNGC	2 cut(s)	116, 394
NdeII	GATC	4 cut(s)	99, 143, 194, 332
NheI	GCTAGC	1 cut(s)	106
NlaIII	CATG	4 cut(s)	58, 157, 169, 179
NlaIV	GGNNCC	1 cut(s)	432
NmuCI	GTSAC	2 cut(s)	340, 424
NspI	RCATGY	2 cut(s)	157, 169
PaeR7I	CTCGAG	1 cut(s)	264
Pfl23II	CGTACG	1 cut(s)	133
PkrI	GCNGC	1 cut(s)	112
PleI	GAGTC	5 cut(s)	200, 278, 337, 377, 477
PpsI	GAGTC	5 cut(s)	200, 278, 337, 377, 477
Psp124BI	GAGCTC	1 cut(s)	271
PspLI	CGTACG	1 cut(s)	133
PspN4I	GGNNCC	1 cut(s)	432
PspPI	GGNCC	2 cut(s)	296, 415
PspXI	VCTCGAGB	1 cut(s)	264
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
SacI	GAGCTC	1 cut(s)	271
SalI	GTCGAC	1 cut(s)	377
SatI	GCNGC	1 cut(s)	111
Sau3AI	GATC	4 cut(s)	99, 143, 194, 332
Sau96I	GGNCC	2 cut(s)	296, 415
SchI	GAGTC	5 cut(s)	200, 278, 337, 377, 478
SduI	GDGCHC	1 cut(s)	271
SetI	ASST	7 cut(s)	13, 108, 112, 135, 261, 271, 417
SfcI	CTRYAG	1 cut(s)	215
Sfr274I	CTCGAG	1 cut(s)	264
SinI	GGWCC	2 cut(s)	296, 415
SlaI	CTCGAG	1 cut(s)	264
SmlI	CTYRAG	2 cut(s)	139, 264
SmoI	CTYRAG	2 cut(s)	139, 264
SsiI	CCGC	1 cut(s)	184
SspI	AATATT	1 cut(s)	63
SspMI	CTAG	1 cut(s)	107
SstI	GAGCTC	1 cut(s)	271
StyI	CCWWGG	1 cut(s)	37
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	3 cut(s)	204, 265, 378
TscAI	CASTG	2 cut(s)	121, 314
TseFI	GTSAC	2 cut(s)	340, 424
TseI	GCWGC	1 cut(s)	110
Tsp45I	GTSAC	2 cut(s)	340, 424
TspGWI	ACGGA	2 cut(s)	425, 443
TspRI	CASTG	2 cut(s)	121, 314
VpaK11BI	GGWCC	2 cut(s)	296, 415
XceI	RCATGY	2 cut(s)	157, 169
XhoI	CTCGAG	1 cut(s)	264
XmiI	GTMKAC	1 cut(s)	378
XspI	CTAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.