FvH4_3g40540

response regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016295
Physical Location & Seq
Forward (+)
34192246 .. 34193244
999 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g40540.t1

Sequence Viewer

Length: 342 bp
ATGTCTGCAGTAACAATGGGGTTAAACAGTGATGCAAAGCCACATGTTCTTGCTGTTGATGATAGTATTTTGGACCGTAAAATCATCGAGAGGTTACTCACCAATTCTTCATGCAAAGTGACTACAGCAGAGAATGCACATGGTGCATTGGAGCTGTTGGGTTTGGCAGATGGACAACAGAACTTTTCCAACACCGTTTCCGACGTTAACATGATAATCACTGATTACTGCATGCCAGGAATGACGGGGTGCCTTGAGGAAGGAGCTGAAGAGTTCTTGCTGAAGCCTCTCCGACAATCGGATGTTAAAAGATTGAGATGCAATCTGACGAAGGACGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Response_reg

Protein Analysis

114

Amino Acids

12.34

Weight (kDa)

4.82

Isoelectric Point (pI)

37.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 16 - 84 2.5e-07 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016295)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g40540
malus_domestica MD03G1136200.v1.1 MD11G1053400.v1.1
prunus_persica Prupe.6G040900_v2.0.a1 Prupe.6G120900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0073221
rosa_laevigata RLG00000036375
rosa_multiflora Rmu_sc0001887.1_g000013
rosa_roxburghii Rroxscaffold_1G00007970
rosa_rugosa Rorug05G0422400
rosa_samantha Rh5AG479100 Rh5BG499800 Rh5CG523000 Rh5DG511900
rosa_wichuraiana Rw5G044540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 249
AcuI CTGAAG 2 cut(s) 288, 302
AdeI CACNNNGTG 1 cut(s) 143
AfiI CCNNNNNNNGG 1 cut(s) 298
AflIII ACRYGT 1 cut(s) 43
AjnI CCWGG 1 cut(s) 235
AluBI AGCT 2 cut(s) 154, 266
AluI AGCT 2 cut(s) 154, 266
AspS9I GGNCC 1 cut(s) 73
AsuHPI GGTGA 1 cut(s) 91
AvaII GGWCC 1 cut(s) 73
BanI GGYRCC 1 cut(s) 249
BccI CCATC 1 cut(s) 164
BciT130I CCWGG 1 cut(s) 237
BfmI CTRYAG 2 cut(s) 6, 123
Bme1390I CCNGG 1 cut(s) 237
Bme18I GGWCC 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 73
BmiI GGNNCC 1 cut(s) 251
BmrFI CCNGG 1 cut(s) 237
BmsI GCATC 2 cut(s) 22, 308
BpuEI CTTGAG 1 cut(s) 275
Bsc4I CCNNNNNNNGG 1 cut(s) 298
BseBI CCWGG 1 cut(s) 237
BseGI GGATG 1 cut(s) 307
BseLI CCNNNNNNNGG 1 cut(s) 298
BshNI GGYRCC 1 cut(s) 249
BslI CCNNNNNNNGG 1 cut(s) 298
BsmI GAATGC 1 cut(s) 139
BspLI GGNNCC 1 cut(s) 251
BspMAI CTGCAG 1 cut(s) 10
BspT107I GGYRCC 1 cut(s) 249
Bst2UI CCWGG 1 cut(s) 237
Bst4CI ACNGT 3 cut(s) 29, 77, 196
Bst6I CTCTTC 1 cut(s) 264
BstAPI GCANNNNNTGC 2 cut(s) 134, 143
BstC8I GCNNGC 1 cut(s) 233
BstF5I GGATG 1 cut(s) 307
BstMWI GCNNNNNNNGC 2 cut(s) 134, 143
BstNI CCWGG 1 cut(s) 237
BstNSI RCATGY 2 cut(s) 47, 235
BstSCI CCNGG 1 cut(s) 235
BstSFI CTRYAG 2 cut(s) 6, 123
BtsCI GGATG 1 cut(s) 307
BtsIMutI CAGTG 2 cut(s) 34, 219
Cac8I GCNNGC 1 cut(s) 233
Cfr13I GGNCC 1 cut(s) 73
CviAII CATG 5 cut(s) 44, 111, 140, 211, 232
CviJI RGCY 4 cut(s) 40, 154, 266, 286
CviKI_1 RGCY 4 cut(s) 40, 154, 266, 286
DraIII CACNNNGTG 1 cut(s) 143
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
Eco47I GGWCC 1 cut(s) 73
Eco57I CTGAAG 2 cut(s) 288, 302
EcoRII CCWGG 1 cut(s) 235
FaeI CATG 5 cut(s) 47, 114, 143, 214, 235
FaiI YATR 5 cut(s) 45, 112, 141, 212, 233
FatI CATG 5 cut(s) 43, 110, 139, 210, 231
FokI GGATG 1 cut(s) 314
Hin1II CATG 5 cut(s) 47, 114, 143, 214, 235
HincII GTYRAC 1 cut(s) 208
HindII GTYRAC 1 cut(s) 208
HpaI GTTAAC 1 cut(s) 208
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 4 cut(s) 202, 293, 301, 327
Hpy188III TCNNGA 1 cut(s) 88
Hpy8I GTNNAC 1 cut(s) 208
Hpy99I CGWCG 1 cut(s) 206
HpyAV CCTTC 2 cut(s) 254, 325
HpyCH4III ACNGT 3 cut(s) 29, 77, 196
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 7 cut(s) 8, 35, 114, 137, 146, 231, 321
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 143
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 5 cut(s) 47, 114, 143, 214, 235
KspAI GTTAAC 1 cut(s) 208
LmnI GCTCC 2 cut(s) 151, 263
LpnPI CCDG 2 cut(s) 222, 249
LweI GCATC 2 cut(s) 22, 308
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 3 cut(s) 10, 93, 118
MboII GAAGA 2 cut(s) 99, 281
MluCI AATT 1 cut(s) 103
MmeI TCCRAC 3 cut(s) 213, 225, 316
MnlI CCTC 3 cut(s) 84, 250, 297
MseI TTAA 3 cut(s) 23, 207, 306
MspR9I CCNGG 1 cut(s) 237
Mva1269I GAATGC 1 cut(s) 139
MvaI CCWGG 1 cut(s) 237
MwoI GCNNNNNNNGC 2 cut(s) 134, 143
NlaIII CATG 5 cut(s) 47, 114, 143, 214, 235
NlaIV GGNNCC 1 cut(s) 251
NmuCI GTSAC 1 cut(s) 118
NspI RCATGY 2 cut(s) 47, 235
PaeI GCATGC 1 cut(s) 235
PciI ACATGT 1 cut(s) 43
PctI GAATGC 1 cut(s) 139
PscI ACATGT 1 cut(s) 43
Psp6I CCWGG 1 cut(s) 235
PspGI CCWGG 1 cut(s) 235
PspN4I GGNNCC 1 cut(s) 251
PspPI GGNCC 1 cut(s) 73
PstI CTGCAG 1 cut(s) 10
SaqAI TTAA 3 cut(s) 23, 207, 306
Sau96I GGNCC 1 cut(s) 73
ScrFI CCNGG 1 cut(s) 237
SetI ASST 4 cut(s) 95, 156, 207, 268
SfaNI GCATC 2 cut(s) 22, 308
SfcI CTRYAG 2 cut(s) 6, 123
SinI GGWCC 1 cut(s) 73
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
SphI GCATGC 1 cut(s) 235
Sse9I AATT 1 cut(s) 103
StyD4I CCNGG 1 cut(s) 235
TaaI ACNGT 3 cut(s) 29, 77, 196
TaiI ACGT 1 cut(s) 207
TaqI TCGA 1 cut(s) 87
TasI AATT 1 cut(s) 103
Tru1I TTAA 3 cut(s) 23, 207, 306
Tru9I TTAA 3 cut(s) 23, 207, 306
TscAI CASTG 2 cut(s) 34, 226
TseFI GTSAC 1 cut(s) 118
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 1 cut(s) 99
TspRI CASTG 2 cut(s) 34, 226
VpaK11BI GGWCC 1 cut(s) 73
XceI RCATGY 2 cut(s) 47, 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.