FvH4_2g36160

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0016771
Physical Location & Seq
Reverse (-)
26517094 .. 26518561
1468 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g36160.t1

Sequence Viewer

Length: 1131 bp
ATGGCTTCATTACTGAGAGTTTCATCGGCGGCGAGAAGGGTTTTGTCAGTTCTGAGTAGCTCTCAGTCTCAGAGTTGCTGGCTAAGTAACCAAGCAGAGTCACTTGCTACCTCTCTCGCATCTTCTGACAAAACCCACTTGATTCTGGAATGGAAATTGGAGAAGTTGCTGGAGGAGAATGAGAGAAATCATGATAGGTACTCTGAGCTGATATCTCTATGTGGAAAAGTTAGGAACCTCCCACTTGCAATGCAAGTGTTTTCTTCCATGGAGGCTAATGGAGTTCAACCCACTGCTGCTGTTTTCAATTCCCTTATACATGTTTGCTTCTCTTCTGGGAATTTGTTCACTGCTATAAGCTTGTTTGAGATTATGGAGAGCTCAGAGGGATTTAAACCCAATTCCGATACTTATGATGCGTACATTTCTGCTTTCTTGAAGTCGGGTAAATTTGATTCGATGCAAGCTTGGTACTCTGCCAAGAAAGCTGCTGGCTTGAATTCTAATATTGAAACCTATCAGTCTCTGATTTCGGGTTGTGTCAAGTTGAGGAATTACGAACTTGGTGATATGTTCTATAAAGAAATGGTGTTATCAGGAATCATGCCAAACTTGCCCATATTGGAGTGTATGCTGGAAGGGCTTTGTAAGAGGAGAAGCTCTGGCCAAGTGAAGGAGTTCTTGGCGATGGTGCGTGGTTATGGGTGGAAGGTTAGTGAAAAAATGGCTGAGATGGTTGTGGGGTTGCATACTGAACTTGGGATGGTGGAGCGATTGGAGGAGCTACTCGAGACTTTGATGGAGAGTGATCAAAGTTCGGAAACTTTGTTGCCGGTGCACTGTGGGATTGTAAGGATGTATGCCGTGATGGATAGATTGGATGATGTAGAGTACTCTGTGGGGAGAATGTTGAAACAAGGATTGTCATTTAGACATGAGGAGGATGTAGAAAAGGTGATCTGCTCCTACTTCAGGCTTTCCGAATACGATAGGCTGGAGTTGTTCTGGGAATGCATCAAGGGTTCTTATGTGCTTACAAGTTCAACCATTGATTTGCTGGTTGCTGGGTATAAAAGAGCAGGGTTATCTGACAAGTTGAATGATATGAAACTAGCTAGTGGATCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

377

Amino Acids

42.17

Weight (kDa)

5.37

Isoelectric Point (pI)

46.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 65 - 152 1e-06 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 66 - 109 2.2e-08 Pentatricopeptide repeat domain
TPR_24 PF23276 71 - 195 4e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 97 - 146 4.4e-07 PPR repeat family
PPR_2 PF13041 133 - 182 1e-05 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016771)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36160
malus_domestica MD08G1118800.v1.1
prunus_persica Prupe.1G453000_v2.0.a1
pyrus_communis pycom08g09920
rosa_chinensis RchiOBHm_Chr6g0305711
rosa_laevigata RLG00000010866
rosa_multiflora Rmu_sc0001809.1_g000036
rosa_roxburghii Rroxscaffold_7G00162420
rosa_rugosa Rorug06G0343400
rosa_samantha Rh6AG454900 Rh6BG446600 Rh6CG468800 Rh6DG455400
rosa_wichuraiana Rw6G039670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 29
AclWI GGATC 1 cut(s) 1129
AcoI YGGCCR 1 cut(s) 664
AcsI RAATTY 3 cut(s) 340, 449, 499
AcuI CTGAAG 1 cut(s) 955
AfaI GTAC 4 cut(s) 200, 422, 473, 893
AfiI CCNNNNNNNGG 2 cut(s) 673, 972
AflIII ACRYGT 1 cut(s) 319
AgsI TTSAA 8 cut(s) 287, 307, 439, 499, 512, 913, 1044, 1099
AjuI GAANNNNNNNTTGG 2 cut(s) 665, 697
AluBI AGCT 9 cut(s) 60, 208, 360, 381, 467, 488, 660, 784, 1115
AluI AGCT 9 cut(s) 60, 208, 360, 381, 467, 488, 660, 784, 1115
Alw21I GWGCWC 2 cut(s) 383, 840
Alw26I GTCTC 3 cut(s) 72, 528, 785
Alw44I GTGCAC 1 cut(s) 836
AlwI GGATC 1 cut(s) 1129
AlwNI CAGNNNCTG 1 cut(s) 526
Ama87I CYCGRG 1 cut(s) 788
AoxI GGCC 1 cut(s) 664
ApaLI GTGCAC 1 cut(s) 836
ApeKI GCWGC 2 cut(s) 296, 488
ApoI RAATTY 3 cut(s) 340, 449, 499
Asp700I GAANNNNTTC 2 cut(s) 344, 677
AsuHPI GGTGA 2 cut(s) 578, 967
AvaI CYCGRG 1 cut(s) 788
BaeGI GKGCMC 1 cut(s) 840
BalI TGGCCA 1 cut(s) 666
BanII GRGCYC 1 cut(s) 383
Bbv12I GWGCWC 2 cut(s) 383, 840
BbvI GCAGC 2 cut(s) 283, 475
BccI CCATC 5 cut(s) 682, 727, 757, 793, 862
BceAI ACGGC 1 cut(s) 848
BclI TGATCA 1 cut(s) 808
BcoDI GTCTC 3 cut(s) 72, 528, 785
BfaI CTAG 2 cut(s) 1112, 1116
BisI GCNGC 3 cut(s) 30, 297, 489
BlsI GCNGC 3 cut(s) 31, 298, 490
BmcAI AGTACT 1 cut(s) 893
BmeT110I CYCGRG 1 cut(s) 788
BmiI GGNNCC 1 cut(s) 236
BmsI GCATC 4 cut(s) 128, 406, 450, 1023
BplI GAGNNNNNCTC 2 cut(s) 46, 78
BpmI CTGGAG 2 cut(s) 191, 1016
BsaJI CCNNGG 1 cut(s) 267
Bsc4I CCNNNNNNNGG 2 cut(s) 673, 972
Bse118I RCCGGY 1 cut(s) 832
Bse3DI GCAATG 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 267
BseGI GGATG 4 cut(s) 768, 861, 886, 949
BseLI CCNNNNNNNGG 2 cut(s) 673, 972
BseMI GCAATG 1 cut(s) 255
BseMII CTCAG 7 cut(s) 5, 44, 77, 83, 195, 396, 720
BseRI GAGGAG 4 cut(s) 188, 667, 794, 953
BseSI GKGCMC 1 cut(s) 840
BseXI GCAGC 2 cut(s) 283, 475
BseYI CCCAGC 1 cut(s) 1064
BshFI GGCC 1 cut(s) 666
BsiHKAI GWGCWC 2 cut(s) 383, 840
BsiHKCI CYCGRG 1 cut(s) 788
BsiSI CCGG 1 cut(s) 833
BslI CCNNNNNNNGG 2 cut(s) 673, 972
BsmAI GTCTC 3 cut(s) 72, 528, 785
BsmI GAATGC 1 cut(s) 1016
BsnI GGCC 1 cut(s) 666
BsoBI CYCGRG 1 cut(s) 788
Bsp1286I GDGCHC 2 cut(s) 383, 840
Bsp143I GATC 3 cut(s) 808, 957, 1121
Bsp19I CCATGG 1 cut(s) 267
BspACI CCGC 1 cut(s) 29
BspANI GGCC 1 cut(s) 666
BspCNI CTCAG 7 cut(s) 6, 45, 76, 82, 196, 395, 721
BspHI TCATGA 1 cut(s) 190
BspLI GGNNCC 1 cut(s) 236
BspPI GGATC 1 cut(s) 1129
BsrDI GCAATG 1 cut(s) 255
BsrFI RCCGGY 1 cut(s) 832
BssAI RCCGGY 1 cut(s) 832
BssECI CCNNGG 1 cut(s) 267
BssMI GATC 3 cut(s) 808, 957, 1121
BssT1I CCWWGG 1 cut(s) 267
Bst4CI ACNGT 1 cut(s) 842
Bst6I CTCTTC 1 cut(s) 337
BstC8I GCNNGC 3 cut(s) 80, 465, 493
BstDEI CTNAG 8 cut(s) 14, 53, 63, 69, 83, 204, 382, 729
BstDSI CCRYGG 1 cut(s) 267
BstENI CCTNNNNNAGG 1 cut(s) 970
BstF5I GGATG 4 cut(s) 768, 861, 886, 949
BstKTI GATC 3 cut(s) 811, 960, 1124
BstMAI GTCTC 3 cut(s) 72, 528, 785
BstMBI GATC 3 cut(s) 808, 957, 1121
BstMWI GCNNNNNNNGC 3 cut(s) 485, 613, 640
BstNSI RCATGY 1 cut(s) 323
BstSLI GKGCMC 1 cut(s) 840
BstV1I GCAGC 2 cut(s) 283, 475
BstX2I RGATCY 1 cut(s) 1121
BstYI RGATCY 1 cut(s) 1121
BsuRI GGCC 1 cut(s) 666
BtgI CCRYGG 1 cut(s) 267
BtgZI GCGATG 1 cut(s) 701
BtsCI GGATG 4 cut(s) 768, 861, 886, 949
BtsI GCAGTG 2 cut(s) 291, 348
BtsIMutI CAGTG 3 cut(s) 291, 348, 838
Cac8I GCNNGC 3 cut(s) 80, 465, 493
CaiI CAGNNNCTG 1 cut(s) 526
CciI TCATGA 1 cut(s) 190
Cfr10I RCCGGY 1 cut(s) 832
Csp6I GTAC 4 cut(s) 199, 421, 472, 892
CviAII CATG 5 cut(s) 191, 268, 320, 604, 935
CviQI GTAC 4 cut(s) 199, 421, 472, 892
DdeI CTNAG 8 cut(s) 14, 53, 63, 69, 83, 204, 382, 729
DpnI GATC 3 cut(s) 810, 959, 1123
DpnII GATC 3 cut(s) 808, 957, 1121
DraI TTTAAA 1 cut(s) 394
EaeI YGGCCR 1 cut(s) 664
Eam1104I CTCTTC 1 cut(s) 337
EarI CTCTTC 1 cut(s) 337
Ecl136II GAGCTC 1 cut(s) 381
Eco130I CCWWGG 1 cut(s) 267
Eco24I GRGCYC 1 cut(s) 383
Eco32I GATATC 1 cut(s) 213
Eco53kI GAGCTC 1 cut(s) 381
Eco57I CTGAAG 1 cut(s) 955
Eco88I CYCGRG 1 cut(s) 788
EcoICRI GAGCTC 1 cut(s) 381
EcoNI CCTNNNNNAGG 1 cut(s) 970
EcoRI GAATTC 1 cut(s) 499
EcoRV GATATC 1 cut(s) 213
EcoT14I CCWWGG 1 cut(s) 267
EcoT22I ATGCAT 1 cut(s) 1016
EcoT38I GRGCYC 1 cut(s) 383
ErhI CCWWGG 1 cut(s) 267
FaeI CATG 5 cut(s) 194, 271, 323, 607, 938
FalI AAGNNNNNCTT 2 cut(s) 665, 697
FatI CATG 5 cut(s) 190, 267, 319, 603, 934
FbaI TGATCA 1 cut(s) 808
Fnu4HI GCNGC 3 cut(s) 30, 297, 489
FokI GGATG 4 cut(s) 775, 868, 893, 956
FriOI GRGCYC 1 cut(s) 383
Fsp4HI GCNGC 3 cut(s) 30, 297, 489
FspBI CTAG 2 cut(s) 1112, 1116
GluI GCNGC 3 cut(s) 30, 297, 489
GsaI CCCAGC 1 cut(s) 1068
GsuI CTGGAG 2 cut(s) 191, 1016
HaeIII GGCC 1 cut(s) 666
HapII CCGG 1 cut(s) 833
Hin1II CATG 5 cut(s) 194, 271, 323, 607, 938
HindIII AAGCTT 2 cut(s) 358, 465
HinfI GANTC 4 cut(s) 98, 142, 455, 600
HpaII CCGG 1 cut(s) 833
HphI GGTGA 2 cut(s) 578, 967
Hpy166II GTNNAC 2 cut(s) 348, 838
Hpy188III TCNNGA 5 cut(s) 146, 191, 436, 597, 790
Hpy8I GTNNAC 2 cut(s) 348, 838
HpyAV CCTTC 4 cut(s) 30, 632, 667, 703
HpyCH4III ACNGT 1 cut(s) 842
HpyCH4V TGCA 6 cut(s) 248, 253, 463, 748, 838, 1014
HpyF10VI GCNNNNNNNGC 3 cut(s) 485, 613, 640
HpyF3I CTNAG 8 cut(s) 14, 53, 63, 69, 83, 204, 382, 729
Hsp92II CATG 5 cut(s) 194, 271, 323, 607, 938
Ksp22I TGATCA 1 cut(s) 808
Kzo9I GATC 3 cut(s) 808, 957, 1121
LmnI GCTCC 3 cut(s) 769, 781, 968
Lsp1109I GCAGC 2 cut(s) 283, 475
LweI GCATC 4 cut(s) 128, 406, 450, 1023
MaeI CTAG 2 cut(s) 1112, 1116
MaeIII GTNAC 2 cut(s) 86, 99
MalI GATC 3 cut(s) 810, 959, 1123
MboI GATC 3 cut(s) 808, 957, 1121
MboII GAAGA 4 cut(s) 114, 255, 324, 1116
MflI RGATCY 1 cut(s) 1121
MhlI GDGCHC 2 cut(s) 383, 840
MlsI TGGCCA 1 cut(s) 666
MluCI AATT 7 cut(s) 155, 307, 340, 400, 449, 499, 553
MluNI TGGCCA 1 cut(s) 666
MlyI GAGTC 1 cut(s) 107
Mox20I TGGCCA 1 cut(s) 666
Mph1103I ATGCAT 1 cut(s) 1016
MroXI GAANNNNTTC 2 cut(s) 344, 677
MscI TGGCCA 1 cut(s) 666
MseI TTAA 1 cut(s) 393
Msp20I TGGCCA 1 cut(s) 666
MspI CCGG 1 cut(s) 833
Mva1269I GAATGC 1 cut(s) 1016
MwoI GCNNNNNNNGC 3 cut(s) 485, 613, 640
NcoI CCATGG 1 cut(s) 267
NdeII GATC 3 cut(s) 808, 957, 1121
NlaIII CATG 5 cut(s) 194, 271, 323, 607, 938
NlaIV GGNNCC 1 cut(s) 236
NmuCI GTSAC 1 cut(s) 99
NsiI ATGCAT 1 cut(s) 1016
NspI RCATGY 1 cut(s) 323
PaeR7I CTCGAG 1 cut(s) 788
PagI TCATGA 1 cut(s) 190
PciI ACATGT 1 cut(s) 319
PctI GAATGC 1 cut(s) 1016
PdmI GAANNNNTTC 2 cut(s) 344, 677
PfeI GAWTC 3 cut(s) 142, 455, 600
PkrI GCNGC 3 cut(s) 31, 298, 490
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
PscI ACATGT 1 cut(s) 319
Psp124BI GAGCTC 1 cut(s) 383
PspFI CCCAGC 1 cut(s) 1064
PspN4I GGNNCC 1 cut(s) 236
PstNI CAGNNNCTG 1 cut(s) 526
PsuI RGATCY 1 cut(s) 1121
RsaI GTAC 4 cut(s) 200, 422, 473, 893
RsaNI GTAC 4 cut(s) 199, 421, 472, 892
SacI GAGCTC 1 cut(s) 383
SaqAI TTAA 1 cut(s) 393
SatI GCNGC 3 cut(s) 30, 297, 489
Sau3AI GATC 3 cut(s) 808, 957, 1121
ScaI AGTACT 1 cut(s) 893
SchI GAGTC 1 cut(s) 107
SduI GDGCHC 2 cut(s) 383, 840
SfaNI GCATC 4 cut(s) 128, 406, 450, 1023
Sfr274I CTCGAG 1 cut(s) 788
SlaI CTCGAG 1 cut(s) 788
SmlI CTYRAG 1 cut(s) 788
SmoI CTYRAG 1 cut(s) 788
Sse9I AATT 7 cut(s) 155, 307, 340, 400, 449, 499, 553
SsiI CCGC 1 cut(s) 29
SspI AATATT 1 cut(s) 508
SspMI CTAG 2 cut(s) 1112, 1116
SstI GAGCTC 1 cut(s) 383
StyI CCWWGG 1 cut(s) 267
TaaI ACNGT 1 cut(s) 842
TaqI TCGA 2 cut(s) 458, 789
TasI AATT 7 cut(s) 155, 307, 340, 400, 449, 499, 553
TatI WGTACW 1 cut(s) 891
TauI GCSGC 1 cut(s) 32
TfiI GAWTC 3 cut(s) 142, 455, 600
Tru1I TTAA 1 cut(s) 393
Tru9I TTAA 1 cut(s) 393
TscAI CASTG 3 cut(s) 298, 355, 845
TseFI GTSAC 1 cut(s) 99
TseI GCWGC 2 cut(s) 296, 488
Tsp45I GTSAC 1 cut(s) 99
TspDTI ATGAA 3 cut(s) 12, 1116, 1121
TspRI CASTG 3 cut(s) 298, 355, 845
VneI GTGCAC 1 cut(s) 836
XagI CCTNNNNNAGG 1 cut(s) 970
XapI RAATTY 3 cut(s) 340, 449, 499
XceI RCATGY 1 cut(s) 323
XcmI CCANNNNNNNNNTGG 1 cut(s) 1054
XhoI CTCGAG 1 cut(s) 788
XmnI GAANNNNTTC 2 cut(s) 344, 677
XspI CTAG 2 cut(s) 1112, 1116
ZrmI AGTACT 1 cut(s) 893
Zsp2I ATGCAT 1 cut(s) 1016
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.