Rw7G031520
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
N/A
Physical Location & Seq
Forward (+)
45193255 .. 45195284
2030 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G031520.1

Sequence Viewer

Length: 255 bp
ATGGAGGTGAGTATGAATCTTTATCAAAAGAAGTTTGAGCTAGCTTTGGCTGTAGTTGATGAAAAAGATCTACATCGCTGGGAAATGGTTGCAGCCTTGGTTGGAGGTAATAAGAGTGCAAAGAATGTGGACAAACAGTATGCCATTCTTTTGGAGGATTTGAAGAAACACAATTTTGTTCAAGTGGATTGTACTCAATTCGTGTGCTGGACTGATGAAAATAACATACTACTCACACATATCTACATAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

84

Amino Acids

9.79

Weight (kDa)

5.48

Isoelectric Point (pI)

36.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 193
AgsI TTSAA 2 cut(s) 163, 182
AluBI AGCT 2 cut(s) 40, 44
AluI AGCT 2 cut(s) 40, 44
ApeKI GCWGC 1 cut(s) 92
AsuHPI GGTGA 1 cut(s) 19
AsuNHI GCTAGC 1 cut(s) 40
BbvI GCAGC 1 cut(s) 104
BfaI CTAG 2 cut(s) 41, 253
BfmI CTRYAG 1 cut(s) 51
BglII AGATCT 1 cut(s) 67
BisI GCNGC 1 cut(s) 93
BlsI GCNGC 1 cut(s) 94
BmtI GCTAGC 1 cut(s) 44
BsaBI GATNNNNATC 1 cut(s) 72
BsaJI CCNNGG 1 cut(s) 96
Bse8I GATNNNNATC 1 cut(s) 72
BseDI CCNNGG 1 cut(s) 96
BseJI GATNNNNATC 1 cut(s) 72
BseXI GCAGC 1 cut(s) 104
BseYI CCCAGC 1 cut(s) 78
Bsp143I GATC 1 cut(s) 67
BspOI GCTAGC 1 cut(s) 44
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 1 cut(s) 67
BssT1I CCWWGG 1 cut(s) 96
Bst4CI ACNGT 1 cut(s) 138
BstC8I GCNNGC 1 cut(s) 42
BstKTI GATC 1 cut(s) 70
BstMBI GATC 1 cut(s) 67
BstSFI CTRYAG 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 104
BstX2I RGATCY 1 cut(s) 67
BstXI CCANNNNNNTGG 1 cut(s) 151
BstYI RGATCY 1 cut(s) 67
BtgZI GCGATG 1 cut(s) 59
Cac8I GCNNGC 1 cut(s) 42
Csp6I GTAC 1 cut(s) 192
CspCI CAANNNNNGTGG 2 cut(s) 108, 143
CviJI RGCY 4 cut(s) 40, 44, 50, 95
CviKI_1 RGCY 4 cut(s) 40, 44, 50, 95
CviQI GTAC 1 cut(s) 192
DpnI GATC 1 cut(s) 69
DpnII GATC 1 cut(s) 67
Eco130I CCWWGG 1 cut(s) 96
EcoT14I CCWWGG 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 96
FaiI YATR 5 cut(s) 14, 141, 227, 240, 248
Fnu4HI GCNGC 1 cut(s) 93
Fsp4HI GCNGC 1 cut(s) 93
FspBI CTAG 2 cut(s) 41, 253
GluI GCNGC 1 cut(s) 93
GsaI CCCAGC 1 cut(s) 82
HinfI GANTC 1 cut(s) 16
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 1 cut(s) 130
Hpy8I GTNNAC 1 cut(s) 130
HpyCH4III ACNGT 1 cut(s) 138
HpyCH4V TGCA 2 cut(s) 92, 119
Kzo9I GATC 1 cut(s) 67
LpnPI CCDG 2 cut(s) 64, 193
Lsp1109I GCAGC 1 cut(s) 104
MaeI CTAG 2 cut(s) 41, 253
MalI GATC 1 cut(s) 69
MboI GATC 1 cut(s) 67
MboII GAAGA 1 cut(s) 175
MflI RGATCY 1 cut(s) 67
MluCI AATT 2 cut(s) 172, 197
MmeI TCCRAC 1 cut(s) 82
MnlI CCTC 2 cut(s) 98, 148
NdeII GATC 1 cut(s) 67
NheI GCTAGC 1 cut(s) 40
PfeI GAWTC 1 cut(s) 16
PkrI GCNGC 1 cut(s) 94
PspFI CCCAGC 1 cut(s) 78
PsuI RGATCY 1 cut(s) 67
RsaI GTAC 1 cut(s) 193
RsaNI GTAC 1 cut(s) 192
SatI GCNGC 1 cut(s) 93
Sau3AI GATC 1 cut(s) 67
SetI ASST 4 cut(s) 9, 42, 46, 109
SfcI CTRYAG 1 cut(s) 51
SgeI CNNG 6 cut(s) 53, 91, 109, 194, 214, 220
Sse9I AATT 2 cut(s) 172, 197
SspMI CTAG 2 cut(s) 41, 253
StyI CCWWGG 1 cut(s) 96
TaaI ACNGT 1 cut(s) 138
TasI AATT 2 cut(s) 172, 197
TatI WGTACW 1 cut(s) 191
TfiI GAWTC 1 cut(s) 16
TseI GCWGC 1 cut(s) 92
TspDTI ATGAA 3 cut(s) 29, 75, 231
XspI CTAG 2 cut(s) 41, 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.