Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

54794966 .. 54795394

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG398800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGATCAAACCAACTTCAAGAACAACACCAACTCGTCCAATAACAATAAGATTTTGCTGTTCAAACCCAAGAAGGAAGAGGAGTACAACAACAGCAATTTAGAAGAGGCGAATTGCACCAGCAGTGGCACAACAACCGAGGAAGACCAACAACCACAGAAGCCAGAGATCATGTACAAGTGTGGTGACCTGAACTTGGACCTTTCAATTGGGCTGGAACCGTTTCAGTCCGAGCCGACTCGGGCATCCTCCGGGAACTCTGCCGAGTCAAAACTGACTCAGCGGACTCCTAATAATCACGACATGTTTCCACAGGCGGCGGCGGCGGTGTGTTTGTGTTGCCAGGTGGGGTTTCAGAGCAGCGAGGCATGTAGGAGTTGTCAGTGCACAAATGGCTTCTACAGATTTCACAGACCCTTGAATTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

142

Amino Acids

15.86

Weight (kDa)

5.17

Isoelectric Point (pI)

57.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	283, 317, 320, 323, 326
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	421
AfaI	GTAC	2 cut(s)	86, 176
AfiI	CCNNNNNNNGG	1 cut(s)	196
AflIII	ACRYGT	1 cut(s)	303
AgsI	TTSAA	4 cut(s)	19, 64, 207, 421
AjnI	CCWGG	1 cut(s)	342
Alw21I	GWGCWC	1 cut(s)	389
Alw44I	GTGCAC	1 cut(s)	385
AlwI	GGATC	1 cut(s)	12
Ama87I	CYCGRG	1 cut(s)	240
ApaLI	GTGCAC	1 cut(s)	385
ApeKI	GCWGC	1 cut(s)	360
ApoI	RAATTY	1 cut(s)	421
Asp700I	GAANNNNTTC	1 cut(s)	222
AspS9I	GGNCC	1 cut(s)	199
AsuC2I	CCSGG	1 cut(s)	253
AsuHPI	GGTGA	1 cut(s)	197
AvaI	CYCGRG	1 cut(s)	240
AvaII	GGWCC	1 cut(s)	199
BaeGI	GKGCMC	1 cut(s)	389
BbsI	GAAGAC	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	389
BbvI	GCAGC	1 cut(s)	372
BciT130I	CCWGG	1 cut(s)	344
BcnI	CCSGG	1 cut(s)	253
BfmI	CTRYAG	1 cut(s)	400
BisI	GCNGC	4 cut(s)	318, 321, 324, 361
BlsI	GCNGC	4 cut(s)	319, 322, 325, 362
Bme1390I	CCNGG	2 cut(s)	253, 344
Bme18I	GGWCC	1 cut(s)	199
BmeT110I	CYCGRG	1 cut(s)	240
BmgT120I	GGNCC	1 cut(s)	199
BmiI	GGNNCC	1 cut(s)	219
BmrFI	CCNGG	2 cut(s)	253, 344
BmsI	GCATC	1 cut(s)	254
BpiI	GAAGAC	1 cut(s)	150
BpuMI	CCSGG	1 cut(s)	253
BsaJI	CCNNGG	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
BseBI	CCWGG	1 cut(s)	344
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	1 cut(s)	245
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	293
BseRI	GAGGAG	1 cut(s)	95
BseSI	GKGCMC	1 cut(s)	389
BseXI	GCAGC	1 cut(s)	372
BsiHKAI	GWGCWC	1 cut(s)	389
BsiHKCI	CYCGRG	1 cut(s)	240
BsiSI	CCGG	1 cut(s)	252
BslI	CCNNNNNNNGG	1 cut(s)	196
BsoBI	CYCGRG	1 cut(s)	240
Bsp1286I	GDGCHC	1 cut(s)	389
Bsp1407I	TGTACA	1 cut(s)	174
Bsp143I	GATC	2 cut(s)	4, 168
BspACI	CCGC	5 cut(s)	283, 317, 320, 323, 326
BspCNI	CTCAG	1 cut(s)	292
BspLI	GGNNCC	1 cut(s)	219
BspPI	GGATC	1 cut(s)	12
BsrGI	TGTACA	1 cut(s)	174
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	2 cut(s)	4, 168
Bst2UI	CCWGG	1 cut(s)	344
Bst4CI	ACNGT	1 cut(s)	222
Bst6I	CTCTTC	2 cut(s)	72, 99
BstAUI	TGTACA	1 cut(s)	174
BstDEI	CTNAG	1 cut(s)	279
BstEII	GGTNACC	1 cut(s)	185
BstF5I	GGATG	1 cut(s)	245
BstKTI	GATC	2 cut(s)	7, 171
BstMBI	GATC	2 cut(s)	4, 168
BstMWI	GCNNNNNNNGC	2 cut(s)	323, 393
BstNI	CCWGG	1 cut(s)	344
BstNSI	RCATGY	2 cut(s)	307, 372
BstPI	GGTNACC	1 cut(s)	185
BstSCI	CCNGG	2 cut(s)	251, 342
BstSFI	CTRYAG	1 cut(s)	400
BstSLI	GKGCMC	1 cut(s)	389
BstV1I	GCAGC	1 cut(s)	372
BstV2I	GAAGAC	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	245
BtsI	GCAGTG	1 cut(s)	130
BtsIMutI	CAGTG	2 cut(s)	130, 389
Cfr13I	GGNCC	1 cut(s)	199
Csp6I	GTAC	2 cut(s)	85, 175
CviAII	CATG	3 cut(s)	172, 304, 369
CviJI	RGCY	4 cut(s)	163, 214, 235, 396
CviKI_1	RGCY	4 cut(s)	163, 214, 235, 396
CviQI	GTAC	2 cut(s)	85, 175
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	2 cut(s)	6, 170
DpnII	GATC	2 cut(s)	4, 168
Eam1104I	CTCTTC	2 cut(s)	72, 99
EarI	CTCTTC	2 cut(s)	72, 99
Eco47I	GGWCC	1 cut(s)	199
Eco88I	CYCGRG	1 cut(s)	240
Eco91I	GGTNACC	1 cut(s)	185
EcoO65I	GGTNACC	1 cut(s)	185
EcoRI	GAATTC	1 cut(s)	421
EcoRII	CCWGG	1 cut(s)	342
FaeI	CATG	3 cut(s)	175, 307, 372
FaiI	YATR	4 cut(s)	173, 305, 370, 427
FatI	CATG	3 cut(s)	171, 303, 368
Fnu4HI	GCNGC	4 cut(s)	318, 321, 324, 361
FokI	GGATG	1 cut(s)	232
Fsp4HI	GCNGC	4 cut(s)	318, 321, 324, 361
GluI	GCNGC	4 cut(s)	318, 321, 324, 361
HapII	CCGG	1 cut(s)	252
Hin1II	CATG	3 cut(s)	175, 307, 372
HinfI	GANTC	4 cut(s)	238, 266, 277, 286
HpaII	CCGG	1 cut(s)	252
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	1 cut(s)	387
Hpy188I	TCNGA	2 cut(s)	232, 357
Hpy188III	TCNNGA	2 cut(s)	19, 299
Hpy8I	GTNNAC	1 cut(s)	387
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	1 cut(s)	222
HpyCH4V	TGCA	2 cut(s)	117, 387
HpyF10VI	GCNNNNNNNGC	2 cut(s)	323, 393
HpyF3I	CTNAG	1 cut(s)	279
Hsp92II	CATG	3 cut(s)	175, 307, 372
Kzo9I	GATC	2 cut(s)	4, 168
LpnPI	CCDG	8 cut(s)	133, 177, 200, 203, 265, 299, 329, 356
Lsp1109I	GCAGC	1 cut(s)	372
LweI	GCATC	1 cut(s)	254
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	2 cut(s)	6, 170
MboI	GATC	2 cut(s)	4, 168
MboII	GAAGA	3 cut(s)	89, 116, 155
MfeI	CAATTG	1 cut(s)	207
MhlI	GDGCHC	1 cut(s)	389
MluCI	AATT	4 cut(s)	97, 112, 207, 421
MlyI	GAGTC	4 cut(s)	232, 271, 275, 280
MnlI	CCTC	5 cut(s)	73, 100, 133, 259, 358
MroXI	GAANNNNTTC	1 cut(s)	222
MspA1I	CMGCKG	1 cut(s)	283
MspI	CCGG	1 cut(s)	252
MspR9I	CCNGG	2 cut(s)	253, 344
MunI	CAATTG	1 cut(s)	207
MvaI	CCWGG	1 cut(s)	344
MwoI	GCNNNNNNNGC	2 cut(s)	323, 393
NciI	CCSGG	1 cut(s)	253
NdeII	GATC	2 cut(s)	4, 168
NlaIII	CATG	3 cut(s)	175, 307, 372
NlaIV	GGNNCC	1 cut(s)	219
NmeAIII	GCCGAG	1 cut(s)	289
NmuCI	GTSAC	1 cut(s)	185
NspI	RCATGY	2 cut(s)	307, 372
PciI	ACATGT	1 cut(s)	303
PdmI	GAANNNNTTC	1 cut(s)	222
PfoI	TCCNGGA	1 cut(s)	251
PkrI	GCNGC	4 cut(s)	319, 322, 325, 362
PleI	GAGTC	4 cut(s)	232, 271, 274, 280
PpsI	GAGTC	4 cut(s)	232, 271, 274, 280
PscI	ACATGT	1 cut(s)	303
Psp6I	CCWGG	1 cut(s)	342
PspEI	GGTNACC	1 cut(s)	185
PspGI	CCWGG	1 cut(s)	342
PspN4I	GGNNCC	1 cut(s)	219
PspPI	GGNCC	1 cut(s)	199
RsaI	GTAC	2 cut(s)	86, 176
RsaNI	GTAC	2 cut(s)	85, 175
SatI	GCNGC	4 cut(s)	318, 321, 324, 361
Sau3AI	GATC	2 cut(s)	4, 168
Sau96I	GGNCC	1 cut(s)	199
SchI	GAGTC	4 cut(s)	232, 271, 275, 280
ScrFI	CCNGG	2 cut(s)	253, 344
SduI	GDGCHC	1 cut(s)	389
SetI	ASST	3 cut(s)	192, 204, 348
SfaNI	GCATC	1 cut(s)	254
SfcI	CTRYAG	1 cut(s)	400
SinI	GGWCC	1 cut(s)	199
Sse9I	AATT	4 cut(s)	97, 112, 207, 421
SsiI	CCGC	5 cut(s)	283, 317, 320, 323, 326
StyD4I	CCNGG	2 cut(s)	251, 342
TaaI	ACNGT	1 cut(s)	222
TasI	AATT	4 cut(s)	97, 112, 207, 421
TatI	WGTACW	2 cut(s)	84, 174
TauI	GCSGC	3 cut(s)	320, 323, 326
TscAI	CASTG	2 cut(s)	130, 389
TseFI	GTSAC	1 cut(s)	185
TseI	GCWGC	1 cut(s)	360
Tsp45I	GTSAC	1 cut(s)	185
TspDTI	ATGAA	1 cut(s)	414
TspRI	CASTG	2 cut(s)	130, 389
VneI	GTGCAC	1 cut(s)	385
VpaK11BI	GGWCC	1 cut(s)	199
XapI	RAATTY	1 cut(s)	421
XceI	RCATGY	2 cut(s)	307, 372
XmnI	GAANNNNTTC	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.