Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

56354659 .. 56358493

Gene Structure 3835 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG430400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGTGAGAGCTCCTTGCTGCGAGAAAATGGGGTTGAAGAAGGGGCCATGGACTACTGAAGAAGACCAGATTCTAATCTCCTACATCCAAACTTACGGTCATGGAAATTGGTGCGCTCTGCCTAAGCATGCTGTTACACGTTACACTATTAGTCAAGTCAAAGCTGCATCGAAAGGGTCGCTACTCGCTATCACGCGCTGCAATGACTTTCCGAATGACTTTCTCCTCCACTTCTTTGAAGGTTCCCTTATCCATACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

86

Amino Acids

9.7

Weight (kDa)

8.41

Isoelectric Point (pI)

16.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 47	5.3e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	196
AcuI	CTGAAG	1 cut(s)	78
AflIII	ACRYGT	1 cut(s)	137
AgsI	TTSAA	2 cut(s)	37, 239
AluBI	AGCT	2 cut(s)	11, 164
AluI	AGCT	2 cut(s)	11, 164
Alw21I	GWGCWC	1 cut(s)	13
AoxI	GGCC	1 cut(s)	44
ApeKI	GCWGC	3 cut(s)	18, 164, 198
ArsI	GACNNNNNNTTYG	2 cut(s)	82, 114
AspLEI	GCGC	2 cut(s)	116, 198
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	13
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	1 cut(s)	13
BbvI	GCAGC	3 cut(s)	5, 151, 185
BfaI	CTAG	1 cut(s)	259
BisI	GCNGC	3 cut(s)	19, 165, 199
BlsI	GCNGC	3 cut(s)	20, 166, 200
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	2 cut(s)	45, 244
BmsI	GCATC	1 cut(s)	176
BpiI	GAAGAC	1 cut(s)	69
Bpu10I	CCTNAGC	1 cut(s)	123
BsaBI	GATNNNNATC	1 cut(s)	74
BsaJI	CCNNGG	1 cut(s)	47
Bse3DI	GCAATG	1 cut(s)	208
Bse8I	GATNNNNATC	1 cut(s)	74
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	1 cut(s)	84
BseJI	GATNNNNATC	1 cut(s)	74
BseMI	GCAATG	1 cut(s)	208
BseRI	GAGGAG	1 cut(s)	215
BseXI	GCAGC	3 cut(s)	5, 151, 185
Bsh1236I	CGCG	1 cut(s)	196
BshFI	GGCC	1 cut(s)	46
BsiHKAI	GWGCWC	1 cut(s)	13
BsnI	GGCC	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp19I	CCATGG	1 cut(s)	47
BspANI	GGCC	1 cut(s)	46
BspFNI	CGCG	1 cut(s)	196
BspLI	GGNNCC	2 cut(s)	45, 244
BsrDI	GCAATG	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	47
BssT1I	CCWWGG	1 cut(s)	47
Bst4CI	ACNGT	1 cut(s)	98
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	1 cut(s)	123
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	1 cut(s)	84
BstFNI	CGCG	1 cut(s)	196
BstHHI	GCGC	2 cut(s)	116, 198
BstNSI	RCATGY	1 cut(s)	131
BstUI	CGCG	1 cut(s)	196
BstV1I	GCAGC	3 cut(s)	5, 151, 185
BstV2I	GAAGAC	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	46
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	84
Cac8I	GCNNGC	1 cut(s)	129
CfoI	GCGC	2 cut(s)	116, 198
Cfr13I	GGNCC	1 cut(s)	44
CviAII	CATG	3 cut(s)	48, 101, 128
CviJI	RGCY	3 cut(s)	11, 46, 164
CviKI_1	RGCY	3 cut(s)	11, 46, 164
DdeI	CTNAG	1 cut(s)	123
Ecl136II	GAGCTC	1 cut(s)	11
Eco130I	CCWWGG	1 cut(s)	47
Eco24I	GRGCYC	1 cut(s)	13
Eco53kI	GAGCTC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	78
EcoICRI	GAGCTC	1 cut(s)	11
EcoT14I	CCWWGG	1 cut(s)	47
EcoT38I	GRGCYC	1 cut(s)	13
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	3 cut(s)	51, 104, 131
FaiI	YATR	4 cut(s)	49, 102, 129, 255
FalI	AAGNNNNNCTT	1 cut(s)	231
FatI	CATG	3 cut(s)	47, 100, 127
Fnu4HI	GCNGC	3 cut(s)	19, 165, 199
FokI	GGATG	1 cut(s)	71
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	3 cut(s)	19, 165, 199
FspBI	CTAG	1 cut(s)	259
GlaI	GCGC	2 cut(s)	115, 197
GluI	GCNGC	3 cut(s)	19, 165, 199
HaeIII	GGCC	1 cut(s)	46
HhaI	GCGC	2 cut(s)	116, 198
Hin1II	CATG	3 cut(s)	51, 104, 131
Hin6I	GCGC	2 cut(s)	114, 196
HinP1I	GCGC	2 cut(s)	114, 196
HinfI	GANTC	1 cut(s)	70
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	1 cut(s)	213
HpyAV	CCTTC	2 cut(s)	34, 233
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4IV	ACGT	1 cut(s)	139
HpyCH4V	TGCA	2 cut(s)	167, 201
HpyF3I	CTNAG	1 cut(s)	123
HpySE526I	ACGT	1 cut(s)	139
Hsp92II	CATG	3 cut(s)	51, 104, 131
HspAI	GCGC	2 cut(s)	114, 196
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	1 cut(s)	80
Lsp1109I	GCAGC	3 cut(s)	5, 151, 185
LweI	GCATC	1 cut(s)	176
MaeI	CTAG	1 cut(s)	259
MaeII	ACGT	1 cut(s)	139
MaeIII	GTNAC	2 cut(s)	133, 140
MboII	GAAGA	3 cut(s)	49, 71, 74
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	1 cut(s)	106
MnlI	CCTC	1 cut(s)	236
MvnI	CGCG	1 cut(s)	196
NcoI	CCATGG	1 cut(s)	47
NlaIII	CATG	3 cut(s)	51, 104, 131
NlaIV	GGNNCC	2 cut(s)	45, 244
NspI	RCATGY	1 cut(s)	131
PaeI	GCATGC	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	70
PkrI	GCNGC	3 cut(s)	20, 166, 200
Psp124BI	GAGCTC	1 cut(s)	13
PspN4I	GGNNCC	2 cut(s)	45, 244
PspPI	GGNCC	1 cut(s)	44
SacI	GAGCTC	1 cut(s)	13
SatI	GCNGC	3 cut(s)	19, 165, 199
Sau96I	GGNCC	1 cut(s)	44
SduI	GDGCHC	1 cut(s)	13
SetI	ASST	5 cut(s)	13, 142, 166, 244, 260
SfaNI	GCATC	1 cut(s)	176
SphI	GCATGC	1 cut(s)	131
Sse9I	AATT	1 cut(s)	106
SspMI	CTAG	1 cut(s)	259
SstI	GAGCTC	1 cut(s)	13
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	1 cut(s)	98
TaiI	ACGT	1 cut(s)	142
TaqI	TCGA	1 cut(s)	170
TasI	AATT	1 cut(s)	106
TfiI	GAWTC	1 cut(s)	70
TseI	GCWGC	3 cut(s)	18, 164, 198
XceI	RCATGY	1 cut(s)	131
XspI	CTAG	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.