Rh7CG414300
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
N/A
Physical Location & Seq
Forward (+)
53226798 .. 53227706
909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG414300.1

Sequence Viewer

Length: 696 bp
ATGGGCATATCGTGGAGAAGGGTGGTTTTGCACTTAGAGGGGAGGAAGAAAGAGAAAAGAAATGGTGGAAAGAATGCAGGAATGGAGTTGCCAGAATTCGTGGCTGAAAAAATGGGCACTGAGAGCACTGGAGTTCAAGAAAACATGTTCTCAAAGAATGACGTCAATGTGCAGTCAACGGGAGATGAAACGGGGAACGGAAATGTGGAGGTTATTAATAAGGCCAACTCTGAGAAACAGGGTAATGCAGAGGATTGCAACAGAAATTTGGAGGGGGTTAATGTAGTAGATAGTGTAAAAAGGAAGAAGGCGACATCAAAGAAACATGTTATTGTGGAGGATTGCAATGAAGAGAAGGAGTCAAGTAAGGGCAACTTAAGAACCCGAAAAAGCACTAGGGCTCGTGATGATTCTGAAAAATTGAGACCTAAGAAAGCATCAAAAAGAGTAAGTTTTGCTGATGATGTGGAGGTCTTCTCACCGTCTGATGACCCAAGTGATGAGCATGAAGACCTGGTAAGAGGTAAACGGTTTTCAGAAGAAGAAAACAAGATTGTGAGACAGGCTGTTTTAAGATACATAGAGGCACATGCTTTAGGGGATGATGGCCTCGACATGGTTTTGCGTTGTAAGTCCCACCCTGACGTCAAAAACCACCCAGAATTGAAAAATGGTTGGAAGGATATGTGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

231

Amino Acids

26.09

Weight (kDa)

7.71

Isoelectric Point (pI)

43.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 165, 648
AcsI RAATTY 2 cut(s) 95, 265
AcyI GRCGYC 2 cut(s) 162, 645
AfiI CCNNNNNNNGG 1 cut(s) 616
AflII CTTAAG 1 cut(s) 376
AflIII ACRYGT 2 cut(s) 144, 325
AgsI TTSAA 2 cut(s) 137, 667
AjnI CCWGG 1 cut(s) 513
Alw21I GWGCWC 1 cut(s) 128
Alw26I GTCTC 2 cut(s) 418, 553
AoxI GGCC 2 cut(s) 222, 607
ApoI RAATTY 2 cut(s) 95, 265
AseI ATTAAT 1 cut(s) 216
AsuHPI GGTGA 1 cut(s) 471
BaeGI GKGCMC 1 cut(s) 119
BanII GRGCYC 1 cut(s) 403
BauI CACGAG 1 cut(s) 402
BbsI GAAGAC 2 cut(s) 466, 516
Bbv12I GWGCWC 1 cut(s) 128
BccI CCATC 1 cut(s) 599
BciT130I CCWGG 1 cut(s) 515
BcoDI GTCTC 2 cut(s) 418, 553
BfaI CTAG 1 cut(s) 396
BfrI CTTAAG 1 cut(s) 376
Bme1390I CCNGG 1 cut(s) 515
BmrFI CCNGG 1 cut(s) 515
BmsI GCATC 1 cut(s) 446
BpiI GAAGAC 2 cut(s) 466, 516
BplI GAGNNNNNCTC 2 cut(s) 461, 493
BpmI CTGGAG 1 cut(s) 150
BsaHI GRCGYC 2 cut(s) 162, 645
BsaI GGTCTC 1 cut(s) 418
Bsc4I CCNNNNNNNGG 1 cut(s) 616
Bse1I ACTGG 1 cut(s) 133
Bse3DI GCAATG 1 cut(s) 352
BseBI CCWGG 1 cut(s) 515
BseGI GGATG 1 cut(s) 607
BseLI CCNNNNNNNGG 1 cut(s) 616
BseMI GCAATG 1 cut(s) 352
BseMII CTCAG 2 cut(s) 111, 222
BseNI ACTGG 1 cut(s) 133
BseSI GKGCMC 1 cut(s) 119
BsgI GTGCAG 1 cut(s) 191
BshFI GGCC 2 cut(s) 224, 609
BsiHKAI GWGCWC 1 cut(s) 128
BslFI GGGAC 1 cut(s) 619
BslI CCNNNNNNNGG 1 cut(s) 616
BsmAI GTCTC 2 cut(s) 418, 553
BsmFI GGGAC 1 cut(s) 619
BsmI GAATGC 1 cut(s) 79
BsnI GGCC 2 cut(s) 224, 609
Bso31I GGTCTC 1 cut(s) 418
Bsp1286I GDGCHC 3 cut(s) 119, 128, 403
BspANI GGCC 2 cut(s) 224, 609
BspCNI CTCAG 2 cut(s) 112, 223
BspTI CTTAAG 1 cut(s) 376
BspTNI GGTCTC 1 cut(s) 418
BsrDI GCAATG 1 cut(s) 352
BsrI ACTGG 1 cut(s) 133
BssNI GRCGYC 2 cut(s) 162, 645
BssSI CACGAG 1 cut(s) 402
Bst2BI CACGAG 1 cut(s) 402
Bst2UI CCWGG 1 cut(s) 515
Bst4CI ACNGT 2 cut(s) 483, 531
Bst6I CTCTTC 1 cut(s) 345
BstACI GRCGYC 2 cut(s) 162, 645
BstAFI CTTAAG 1 cut(s) 376
BstDEI CTNAG 4 cut(s) 34, 120, 231, 429
BstF5I GGATG 1 cut(s) 607
BstMAI GTCTC 2 cut(s) 418, 553
BstMWI GCNNNNNNNGC 1 cut(s) 123
BstNI CCWGG 1 cut(s) 515
BstNSI RCATGY 3 cut(s) 148, 329, 593
BstSCI CCNGG 1 cut(s) 513
BstSLI GKGCMC 1 cut(s) 119
BstV2I GAAGAC 2 cut(s) 466, 516
BsuRI GGCC 2 cut(s) 224, 609
BtsCI GGATG 1 cut(s) 607
BtsIMutI CAGTG 2 cut(s) 117, 126
CsiI ACCWGGT 1 cut(s) 513
CviAII CATG 5 cut(s) 145, 326, 506, 590, 616
CviJI RGCY 5 cut(s) 104, 224, 401, 566, 609
CviKI_1 RGCY 5 cut(s) 104, 224, 401, 566, 609
DdeI CTNAG 4 cut(s) 34, 120, 231, 429
Eam1104I CTCTTC 1 cut(s) 345
EarI CTCTTC 1 cut(s) 345
Eco24I GRGCYC 1 cut(s) 403
Eco31I GGTCTC 1 cut(s) 418
EcoRI GAATTC 1 cut(s) 95
EcoRII CCWGG 1 cut(s) 513
EcoT38I GRGCYC 1 cut(s) 403
FaeI CATG 5 cut(s) 148, 329, 509, 593, 619
FaiI YATR 8 cut(s) 8, 146, 327, 507, 581, 591, 617, 686
FalI AAGNNNNNCTT 2 cut(s) 359, 391
FaqI GGGAC 1 cut(s) 619
FatI CATG 5 cut(s) 144, 325, 505, 589, 615
FokI GGATG 1 cut(s) 614
FriOI GRGCYC 1 cut(s) 403
FspBI CTAG 1 cut(s) 396
GsuI CTGGAG 1 cut(s) 150
HaeIII GGCC 2 cut(s) 224, 609
Hin1I GRCGYC 2 cut(s) 162, 645
Hin1II CATG 5 cut(s) 148, 329, 509, 593, 619
HincII GTYRAC 1 cut(s) 177
HindII GTYRAC 1 cut(s) 177
HinfI GANTC 2 cut(s) 359, 410
HphI GGTGA 1 cut(s) 471
Hpy166II GTNNAC 2 cut(s) 177, 527
Hpy188I TCNGA 4 cut(s) 232, 415, 487, 538
Hpy188III TCNNGA 2 cut(s) 137, 404
Hpy8I GTNNAC 2 cut(s) 177, 527
HpyAV CCTTC 4 cut(s) 12, 301, 349, 673
HpyCH4III ACNGT 2 cut(s) 483, 531
HpyCH4IV ACGT 2 cut(s) 162, 645
HpyCH4V TGCA 6 cut(s) 31, 77, 172, 248, 258, 345
HpyF10VI GCNNNNNNNGC 1 cut(s) 123
HpyF3I CTNAG 4 cut(s) 34, 120, 231, 429
HpySE526I ACGT 2 cut(s) 162, 645
Hsp92I GRCGYC 2 cut(s) 162, 645
Hsp92II CATG 5 cut(s) 148, 329, 509, 593, 619
LpnPI CCDG 9 cut(s) 63, 105, 114, 224, 500, 527, 548, 654, 672
LweI GCATC 1 cut(s) 446
MabI ACCWGGT 1 cut(s) 513
MaeI CTAG 1 cut(s) 396
MaeII ACGT 2 cut(s) 162, 645
MboII GAAGA 7 cut(s) 58, 316, 362, 466, 521, 551, 554
MhlI GDGCHC 3 cut(s) 119, 128, 403
MluCI AATT 4 cut(s) 95, 265, 419, 662
MlyI GAGTC 1 cut(s) 368
MmeI TCCRAC 1 cut(s) 656
MseI TTAA 4 cut(s) 216, 279, 377, 572
MspCI CTTAAG 1 cut(s) 376
MspR9I CCNGG 1 cut(s) 515
Mva1269I GAATGC 1 cut(s) 79
MvaI CCWGG 1 cut(s) 515
MwoI GCNNNNNNNGC 1 cut(s) 123
NlaIII CATG 5 cut(s) 148, 329, 509, 593, 619
NspI RCATGY 3 cut(s) 148, 329, 593
PciI ACATGT 2 cut(s) 144, 325
PctI GAATGC 1 cut(s) 79
PfeI GAWTC 1 cut(s) 410
PleI GAGTC 1 cut(s) 367
PpsI GAGTC 1 cut(s) 367
PscI ACATGT 2 cut(s) 144, 325
PshBI ATTAAT 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 513
PspGI CCWGG 1 cut(s) 513
SaqAI TTAA 4 cut(s) 216, 279, 377, 572
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 1 cut(s) 515
SduI GDGCHC 3 cut(s) 119, 128, 403
SetI ASST 7 cut(s) 165, 213, 430, 474, 516, 526, 648
SexAI ACCWGGT 1 cut(s) 513
SfaNI GCATC 1 cut(s) 446
SmlI CTYRAG 1 cut(s) 376
SmoI CTYRAG 1 cut(s) 376
Sse9I AATT 4 cut(s) 95, 265, 419, 662
SspMI CTAG 1 cut(s) 396
StyD4I CCNGG 1 cut(s) 513
TaaI ACNGT 2 cut(s) 483, 531
TaiI ACGT 2 cut(s) 165, 648
TaqI TCGA 1 cut(s) 612
TasI AATT 4 cut(s) 95, 265, 419, 662
TfiI GAWTC 1 cut(s) 410
Tru1I TTAA 4 cut(s) 216, 279, 377, 572
Tru9I TTAA 4 cut(s) 216, 279, 377, 572
TscAI CASTG 2 cut(s) 124, 133
TspDTI ATGAA 3 cut(s) 201, 363, 522
TspGWI ACGGA 1 cut(s) 213
TspRI CASTG 2 cut(s) 124, 133
Vha464I CTTAAG 1 cut(s) 376
VspI ATTAAT 1 cut(s) 216
XapI RAATTY 2 cut(s) 95, 265
XceI RCATGY 3 cut(s) 148, 329, 593
XspI CTAG 1 cut(s) 396
ZraI GACGTC 2 cut(s) 163, 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.