Rh7CG238000
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
N/A
Physical Location & Seq
Reverse (-)
22266955 .. 22273497
6543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG238000.1

Sequence Viewer

Length: 855 bp
ATGTCCTCACCCACTCCCCGCCGCCGCTTCCCGCCGCTGTGCTGGACCGACGACGAGGCCCAAGCCCTCATCTCCGTCTTCAAGGACAAGTGGTCCTCCCTCGGCCGCACCAATCTCAAAGCCAACGACTGGGATGACGTCGCCGCCACCCTCGCCGCCCAATTCCCCCTCGTCTCCCCCTCCAAGACCGCCGCGCAGTGCCACAACAAGATCGAGAAGCTCCGCAAACGGTACCGCTCCGAGAAGCAGCGGGCCTCGACCCGACCCGGTCGGTTCTCGCCTTGGGCTTTGTATCGGTTTCTGGAGGAATTGGAAGGCGAGTCTGGTAAGGGGTCGGGCCACACGGCCCGTAAAGGTGAGGGGAATTCGAGTTCTAGGTTTTTAGCTGATTTGGATGAATTTGTTGATGTACGGAGTGGTGGTGGTGGTGATGCTGGTTTTCCTGTGAAATCATTAGGTCATAGGAATTTGGCGCCTTTGTTTAATCCTAAGATGAAGTTGAAGAAGAATGAAAGCTCAGGGTTTCTTCGAAAATTCGGAGGAGTGGAGTCTAGTGGTGTTGGTGTTAACGATTTGGGAGGGAGTTCGGGTTTGTTGAGGAGTGTTAGAGAGGTTGATCCGGTTGAAGAGATGGTTTCGTCGATTCAGTTGCTTGGGGAGAAGTATATGAAGGTGGAGAAGAGGAAGATGGAGATGGCTAGGGAGATTGTGATGATGCAAATGGACATGGAAATGAAGCAAACTCAGGTTATTATGGAATCGCAGCAGCAGATAGTGAATGCTTGTGTGAGTGCATTGTTGGACAGCAAGAAGAAGAAGAAGAGGAAGATGAAGGCCGTGTCGACTGATTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

284

Amino Acids

31.63

Weight (kDa)

9.7

Isoelectric Point (pI)

56.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 14 - 104 4.7e-15 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 141
Acc65I GGTACC 1 cut(s) 231
AccB1I GGYRCC 2 cut(s) 231, 472
AccB7I CCANNNNNTGG 1 cut(s) 129
AccBSI CCGCTC 1 cut(s) 237
AccI GTMKAC 1 cut(s) 842
AccII CGCG 1 cut(s) 194
AclWI GGATC 1 cut(s) 611
AcoI YGGCCR 1 cut(s) 103
AcsI RAATTY 4 cut(s) 364, 398, 466, 533
AcyI GRCGYC 2 cut(s) 138, 473
AfaI GTAC 2 cut(s) 233, 411
AfiI CCNNNNNNNGG 1 cut(s) 129
AgsI TTSAA 3 cut(s) 82, 502, 626
AhdI GACNNNNNGTC 1 cut(s) 91
AloI GAACNNNNNNTCC 2 cut(s) 355, 387
AluBI AGCT 3 cut(s) 220, 386, 516
AluI AGCT 3 cut(s) 220, 386, 516
Alw26I GTCTC 1 cut(s) 178
AlwI GGATC 1 cut(s) 611
AoxI GGCC 6 cut(s) 57, 103, 252, 337, 345, 834
ApeKI GCWGC 3 cut(s) 247, 763, 766
ApoI RAATTY 4 cut(s) 364, 398, 466, 533
Asp718I GGTACC 1 cut(s) 231
AspLEI GCGC 2 cut(s) 196, 475
AspS9I GGNCC 6 cut(s) 45, 58, 93, 252, 337, 346
AsuC2I CCSGG 1 cut(s) 267
AsuHPI GGTGA 2 cut(s) 368, 440
AsuII TTCGAA 1 cut(s) 529
AvaII GGWCC 2 cut(s) 45, 93
BanI GGYRCC 2 cut(s) 231, 472
BbsI GAAGAC 1 cut(s) 70
BbvI GCAGC 3 cut(s) 259, 775, 778
BccI CCATC 3 cut(s) 625, 682, 688
BceAI ACGGC 2 cut(s) 360, 821
BcgI CGANNNNNNTGC 2 cut(s) 631, 665
BcnI CCSGG 1 cut(s) 267
BcoDI GTCTC 1 cut(s) 178
BfaI CTAG 4 cut(s) 375, 552, 699, 853
BfoI RGCGCY 1 cut(s) 476
Bme1390I CCNGG 1 cut(s) 267
Bme18I GGWCC 2 cut(s) 45, 93
BmeRI GACNNNNNGTC 1 cut(s) 91
BmgT120I GGNCC 6 cut(s) 45, 58, 93, 252, 337, 346
BmiI GGNNCC 2 cut(s) 233, 474
BmrFI CCNGG 1 cut(s) 267
BmrI ACTGGG 1 cut(s) 139
BmsI GCATC 2 cut(s) 421, 705
BmuI ACTGGG 1 cut(s) 139
BpiI GAAGAC 1 cut(s) 70
BpmI CTGGAG 1 cut(s) 323
Bpu10I CCTNAGC 1 cut(s) 517
Bpu14I TTCGAA 1 cut(s) 529
BpuMI CCSGG 1 cut(s) 267
BsaHI GRCGYC 2 cut(s) 138, 473
BsaJI CCNNGG 2 cut(s) 100, 281
BsaWI WCCGGW 1 cut(s) 619
BsaXI ACNNNNNCTCC 4 cut(s) 406, 436, 574, 604
Bsc4I CCNNNNNNNGG 1 cut(s) 129
Bse1I ACTGG 1 cut(s) 134
BseDI CCNNGG 2 cut(s) 100, 281
BseGI GGATG 2 cut(s) 139, 400
BseLI CCNNNNNNNGG 1 cut(s) 129
BseMII CTCAG 2 cut(s) 531, 758
BseNI ACTGG 1 cut(s) 134
BseRI GAGGAG 2 cut(s) 555, 613
BseX3I CGGCCG 1 cut(s) 103
BseXI GCAGC 3 cut(s) 259, 775, 778
Bsh1236I CGCG 1 cut(s) 194
Bsh1285I CGRYCG 2 cut(s) 106, 271
BshFI GGCC 6 cut(s) 59, 105, 254, 339, 347, 836
BshNI GGYRCC 2 cut(s) 231, 472
BsiEI CGRYCG 2 cut(s) 106, 271
BsiSI CCGG 2 cut(s) 267, 620
BslI CCNNNNNNNGG 1 cut(s) 129
BsmAI GTCTC 1 cut(s) 178
BsmBI CGTCTC 1 cut(s) 178
BsmI GAATGC 1 cut(s) 784
BsnI GGCC 6 cut(s) 59, 105, 254, 339, 347, 836
Bsp119I TTCGAA 1 cut(s) 529
Bsp143I GATC 2 cut(s) 210, 616
BspANI GGCC 6 cut(s) 59, 105, 254, 339, 347, 836
BspCNI CTCAG 2 cut(s) 530, 757
BspFNI CGCG 1 cut(s) 194
BspLI GGNNCC 2 cut(s) 233, 474
BspPI GGATC 1 cut(s) 611
BspT104I TTCGAA 1 cut(s) 529
BspT107I GGYRCC 2 cut(s) 231, 472
BsrBI CCGCTC 1 cut(s) 237
BsrI ACTGG 1 cut(s) 134
BssECI CCNNGG 2 cut(s) 100, 281
BssMI GATC 2 cut(s) 210, 616
BssNI GRCGYC 2 cut(s) 138, 473
BssT1I CCWWGG 1 cut(s) 281
Bst4CI ACNGT 1 cut(s) 231
Bst6I CTCTTC 3 cut(s) 621, 674, 815
BstACI GRCGYC 2 cut(s) 138, 473
BstBI TTCGAA 1 cut(s) 529
BstC8I GCNNGC 1 cut(s) 252
BstDEI CTNAG 3 cut(s) 489, 517, 744
BstF5I GGATG 2 cut(s) 139, 400
BstFNI CGCG 1 cut(s) 194
BstH2I RGCGCY 1 cut(s) 476
BstHHI GCGC 2 cut(s) 196, 475
BstKTI GATC 2 cut(s) 213, 619
BstMAI GTCTC 1 cut(s) 178
BstMBI GATC 2 cut(s) 210, 616
BstMCI CGRYCG 2 cut(s) 106, 271
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 265
BstUI CGCG 1 cut(s) 194
BstV1I GCAGC 3 cut(s) 259, 775, 778
BstV2I GAAGAC 1 cut(s) 70
BstZI CGGCCG 1 cut(s) 103
BsuRI GGCC 6 cut(s) 59, 105, 254, 339, 347, 836
BtsCI GGATG 2 cut(s) 139, 400
BtsI GCAGTG 1 cut(s) 203
BtsIMutI CAGTG 1 cut(s) 203
Cac8I GCNNGC 1 cut(s) 252
CfoI GCGC 2 cut(s) 196, 475
Cfr13I GGNCC 6 cut(s) 45, 58, 93, 252, 337, 346
Csp6I GTAC 2 cut(s) 232, 410
CviAII CATG 1 cut(s) 727
CviQI GTAC 2 cut(s) 232, 410
DdeI CTNAG 3 cut(s) 489, 517, 744
DinI GGCGCC 1 cut(s) 474
DpnI GATC 2 cut(s) 212, 618
DpnII GATC 2 cut(s) 210, 616
DriI GACNNNNNGTC 1 cut(s) 91
EaeI YGGCCR 1 cut(s) 103
EagI CGGCCG 1 cut(s) 103
Eam1104I CTCTTC 3 cut(s) 621, 674, 815
Eam1105I GACNNNNNGTC 1 cut(s) 91
EarI CTCTTC 3 cut(s) 621, 674, 815
EclXI CGGCCG 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 281
Eco47I GGWCC 2 cut(s) 45, 93
Eco52I CGGCCG 1 cut(s) 103
EcoRI GAATTC 1 cut(s) 364
EcoT14I CCWWGG 1 cut(s) 281
EgeI GGCGCC 1 cut(s) 474
EheI GGCGCC 1 cut(s) 474
ErhI CCWWGG 1 cut(s) 281
Esp3I CGTCTC 1 cut(s) 178
FaeI CATG 1 cut(s) 730
FaiI YATR 5 cut(s) 462, 666, 668, 728, 755
FatI CATG 1 cut(s) 726
FauI CCCGC 3 cut(s) 26, 39, 243
FblI GTMKAC 1 cut(s) 842
FokI GGATG 2 cut(s) 146, 407
FspBI CTAG 4 cut(s) 375, 552, 699, 853
GlaI GCGC 2 cut(s) 195, 474
GsuI CTGGAG 1 cut(s) 323
HaeII RGCGCY 1 cut(s) 476
HaeIII GGCC 6 cut(s) 59, 105, 254, 339, 347, 836
HapII CCGG 2 cut(s) 267, 620
HhaI GCGC 2 cut(s) 196, 475
Hin1I GRCGYC 2 cut(s) 138, 473
Hin1II CATG 1 cut(s) 730
Hin6I GCGC 2 cut(s) 194, 473
HinP1I GCGC 2 cut(s) 194, 473
HincII GTYRAC 2 cut(s) 568, 843
HindII GTYRAC 2 cut(s) 568, 843
HinfI GANTC 5 cut(s) 320, 548, 643, 758, 848
HpaI GTTAAC 1 cut(s) 568
HpaII CCGG 2 cut(s) 267, 620
HphI GGTGA 2 cut(s) 368, 440
Hpy166II GTNNAC 2 cut(s) 568, 843
Hpy188I TCNGA 2 cut(s) 241, 539
Hpy188III TCNNGA 2 cut(s) 214, 302
Hpy8I GTNNAC 2 cut(s) 568, 843
Hpy99I CGWCG 4 cut(s) 53, 56, 143, 643
HpyAV CCTTC 3 cut(s) 308, 664, 826
HpyCH4III ACNGT 1 cut(s) 231
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 2 cut(s) 718, 794
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 3 cut(s) 489, 517, 744
HpySE526I ACGT 1 cut(s) 138
Hsp92I GRCGYC 2 cut(s) 138, 473
Hsp92II CATG 1 cut(s) 730
HspAI GCGC 2 cut(s) 194, 473
KasI GGCGCC 1 cut(s) 472
KpnI GGTACC 1 cut(s) 235
KspAI GTTAAC 1 cut(s) 568
Kzo9I GATC 2 cut(s) 210, 616
LmnI GCTCC 2 cut(s) 225, 242
Lsp1109I GCAGC 3 cut(s) 259, 775, 778
LweI GCATC 2 cut(s) 421, 705
MaeI CTAG 4 cut(s) 375, 552, 699, 853
MaeII ACGT 1 cut(s) 138
MalI GATC 2 cut(s) 212, 618
MbiI CCGCTC 1 cut(s) 237
MboI GATC 2 cut(s) 210, 616
MluCI AATT 6 cut(s) 161, 308, 364, 398, 466, 533
Mly113I GGCGCC 1 cut(s) 473
MlyI GAGTC 2 cut(s) 329, 557
MmeI TCCRAC 1 cut(s) 780
MseI TTAA 2 cut(s) 483, 567
MslI CAYNNNNRTG 1 cut(s) 731
MspA1I CMGCKG 2 cut(s) 37, 250
MspI CCGG 2 cut(s) 267, 620
MspR9I CCNGG 1 cut(s) 267
Mva1269I GAATGC 1 cut(s) 784
MvnI CGCG 1 cut(s) 194
MwoI GCNNNNNNNGC 1 cut(s) 152
NarI GGCGCC 1 cut(s) 473
NciI CCSGG 1 cut(s) 267
NdeII GATC 2 cut(s) 210, 616
NlaIII CATG 1 cut(s) 730
NlaIV GGNNCC 2 cut(s) 233, 474
NmeAIII GCCGAG 1 cut(s) 81
NspV TTCGAA 1 cut(s) 529
PctI GAATGC 1 cut(s) 784
PfeI GAWTC 3 cut(s) 643, 758, 848
PflFI GACNNNGTC 1 cut(s) 267
PflMI CCANNNNNTGG 1 cut(s) 129
PleI GAGTC 2 cut(s) 328, 556
PluTI GGCGCC 1 cut(s) 476
PpsI GAGTC 2 cut(s) 328, 556
PspN4I GGNNCC 2 cut(s) 233, 474
PspPI GGNCC 6 cut(s) 45, 58, 93, 252, 337, 346
PsyI GACNNNGTC 1 cut(s) 267
RsaI GTAC 2 cut(s) 233, 411
RsaNI GTAC 2 cut(s) 232, 410
RseI CAYNNNNRTG 1 cut(s) 731
SalI GTCGAC 1 cut(s) 841
SaqAI TTAA 2 cut(s) 483, 567
Sau3AI GATC 2 cut(s) 210, 616
Sau96I GGNCC 6 cut(s) 45, 58, 93, 252, 337, 346
SchI GAGTC 2 cut(s) 329, 557
ScrFI CCNGG 1 cut(s) 267
SfaNI GCATC 2 cut(s) 421, 705
SfoI GGCGCC 1 cut(s) 474
SfuI TTCGAA 1 cut(s) 529
SinI GGWCC 2 cut(s) 45, 93
SmiMI CAYNNNNRTG 1 cut(s) 731
Sse9I AATT 6 cut(s) 161, 308, 364, 398, 466, 533
SspDI GGCGCC 1 cut(s) 472
SspMI CTAG 4 cut(s) 375, 552, 699, 853
StyD4I CCNGG 1 cut(s) 265
StyI CCWWGG 1 cut(s) 281
TaaI ACNGT 1 cut(s) 231
TaiI ACGT 1 cut(s) 141
TaqI TCGA 6 cut(s) 213, 257, 368, 529, 641, 842
TaqII GACCGA 1 cut(s) 62
TasI AATT 6 cut(s) 161, 308, 364, 398, 466, 533
TauI GCSGC 7 cut(s) 24, 27, 37, 108, 146, 158, 194
TfiI GAWTC 3 cut(s) 643, 758, 848
Tru1I TTAA 2 cut(s) 483, 567
Tru9I TTAA 2 cut(s) 483, 567
TscAI CASTG 1 cut(s) 203
TseI GCWGC 3 cut(s) 247, 763, 766
TspDTI ATGAA 6 cut(s) 411, 509, 525, 683, 749, 845
TspGWI ACGGA 2 cut(s) 64, 427
TspRI CASTG 1 cut(s) 203
Tth111I GACNNNGTC 1 cut(s) 267
Van91I CCANNNNNTGG 1 cut(s) 129
VpaK11BI GGWCC 2 cut(s) 45, 93
XapI RAATTY 4 cut(s) 364, 398, 466, 533
XmiI GTMKAC 1 cut(s) 842
XspI CTAG 4 cut(s) 375, 552, 699, 853
ZraI GACGTC 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.